Wall clock time and date at job start Tue Mar 31 2020 15:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00338 * 2 1 4 4 O 1.21288 * 120.00190 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99836 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.46993 * 180.02562 * 5 3 2 7 7 C 1.76196 * 99.99913 * 180.02562 * 6 5 3 8 8 H 1.08000 * 120.00444 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00130 * 179.97438 * 7 6 5 10 10 N 1.31634 * 120.00129 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 120.00330 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46690 * 60.00303 * 11 9 7 13 13 H 1.48500 * 109.47118 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.46850 * 300.00343 * 11 9 7 15 15 C 1.39737 * 119.99818 * 179.97438 * 2 1 3 16 16 C 1.38740 * 120.13554 * 90.29597 * 15 2 1 17 17 C 1.38139 * 120.05074 * 180.32057 * 16 15 2 18 18 C 1.38411 * 120.31754 * 359.68458 * 17 16 15 19 19 C 1.38013 * 120.26982 * 359.97438 * 18 17 16 20 20 C 1.39281 * 119.94934 * 0.02562 * 19 18 17 21 21 C 1.48306 * 120.16090 * 180.02562 * 20 19 18 22 22 C 1.39383 * 120.12213 * 129.73006 * 21 20 19 23 23 C 1.38001 * 119.86932 * 179.76857 * 22 21 20 24 24 C 1.38328 * 120.12633 * 0.48283 * 23 22 21 25 25 C 1.38322 * 120.25355 * 359.77196 * 24 23 22 26 26 C 1.38008 * 120.12367 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47408 * 270.00564 * 1 2 3 28 28 H 1.08997 * 109.47357 * 30.00085 * 1 2 3 29 29 H 1.09000 * 109.47863 * 150.00314 * 1 2 3 30 30 H 1.09000 * 109.47202 * 300.00511 * 5 3 2 31 31 H 1.09004 * 109.46843 * 60.00441 * 5 3 2 32 32 H 0.96997 * 120.00046 * 179.97438 * 10 9 7 33 33 H 1.08002 * 119.97335 * 0.02660 * 16 15 2 34 34 H 1.07997 * 119.84351 * 179.70145 * 17 16 15 35 35 H 1.07998 * 119.86491 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.02777 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.06060 * 359.97438 * 22 21 20 38 38 H 1.08006 * 119.93859 * 180.23169 * 23 22 21 39 39 H 1.08002 * 119.87252 * 179.74374 * 24 23 22 40 40 H 1.08002 * 119.93995 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.06058 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5617 3.8480 -0.0012 7 6 1.4417 5.2081 -0.0010 8 1 0.3764 5.0305 -0.0002 9 6 1.9284 6.5079 -0.0009 10 7 3.2268 6.7246 -0.0013 11 14 0.7410 7.9501 -0.0014 12 1 -0.1145 7.8872 1.2108 13 1 1.5072 9.2222 -0.0017 14 1 -0.1135 7.8871 -1.2142 15 6 2.1636 -1.2102 0.0005 16 6 2.5172 -1.8108 -1.1991 17 6 3.2021 -3.0105 -1.1965 18 6 3.5450 -3.6167 -0.0004 19 6 3.2060 -3.0273 1.2006 20 6 2.5155 -1.8177 1.2111 21 6 2.1494 -1.1799 2.4989 22 6 2.4506 0.1620 2.7255 23 6 2.1032 0.7516 3.9239 24 6 1.4663 0.0108 4.9032 25 6 1.1696 -1.3227 4.6859 26 6 1.5076 -1.9214 3.4892 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3635 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8908 31 1 0.7585 2.5302 0.8892 32 1 3.5670 7.6329 -0.0016 33 1 2.2527 -1.3425 -2.1356 34 1 3.4714 -3.4776 -2.1323 35 1 4.0808 -4.5544 -0.0070 36 1 3.4760 -3.5035 2.1316 37 1 2.9519 0.7401 1.9633 38 1 2.3328 1.7923 4.0991 39 1 1.2000 0.4752 5.8411 40 1 0.6726 -1.8964 5.4541 41 1 1.2751 -2.9625 3.3205 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064815174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:26 Heat of formation + Delta-G solvation = 28.149840 kcal Electronic energy + Delta-G solvation = -24875.722871 eV Core-core repulsion = 21426.028934 eV Total energy + Delta-G solvation = -3449.693937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.72548 -38.77830 -38.13588 -35.30893 -32.69098 -32.44712 -31.02680 -30.73530 -29.25281 -28.36202 -26.55499 -25.50481 -23.52363 -22.96392 -22.12638 -21.05737 -19.48083 -17.73072 -17.49504 -16.84748 -16.28821 -16.14020 -15.78567 -14.96956 -14.82156 -14.76536 -14.45128 -14.21747 -13.89090 -13.40294 -13.33426 -13.14902 -13.02941 -12.83556 -12.63356 -12.48940 -12.30861 -11.99382 -11.91842 -11.50819 -11.06524 -11.05539 -10.99686 -10.79210 -10.74641 -9.85817 -9.51128 -9.35145 -9.07694 -8.89477 -8.88388 -8.72216 -8.27368 -8.24574 -6.53139 -6.23328 -3.94550 0.85638 1.24074 1.48819 1.68051 2.86462 2.93702 3.22253 3.24347 3.27899 3.54763 3.59215 3.90900 4.18319 4.54715 4.83706 4.91617 4.93759 5.00518 5.05345 5.07389 5.11900 5.20037 5.29694 5.35723 5.46529 5.47339 5.56031 5.59611 5.68791 5.69229 5.82424 5.84868 5.99225 6.09007 6.11539 6.25800 6.36982 6.41288 6.48224 6.57353 6.67479 6.71908 7.02648 7.09225 7.39590 7.57648 8.33169 8.47874 9.21921 10.83956 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003764 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.723474 B = 7437.988415 C = 8587.938008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.583 5.583 3 C 0.539 3.461 4 O -0.504 6.504 5 C -0.151 4.151 6 S -0.057 6.057 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.159 3.841 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.038 4.038 21 C -0.048 4.048 22 C -0.104 4.104 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.269 0.731 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -20.925 3.916 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.317 5.317 3 C 0.328 3.672 4 O -0.378 6.378 5 C -0.301 4.301 6 S 0.170 5.830 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.134 4.134 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.068 3.932 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.136 4.136 19 C -0.122 4.122 20 C -0.040 4.040 21 C -0.048 4.048 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.129 4.129 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.012 -20.743 3.913 21.486 hybrid contribution -2.241 0.969 -0.003 2.442 sum -6.253 -19.774 3.910 21.104 Atomic orbital electron populations 1.21831 0.78470 1.03340 1.02235 1.45346 1.06845 1.03569 1.75899 1.20428 0.88017 0.84177 0.74562 1.90728 1.13565 1.86592 1.46894 1.23590 1.04711 0.96844 1.04983 1.85402 1.07767 0.93152 1.96729 1.22808 0.94272 0.92169 1.59181 0.90970 1.24976 0.95648 0.98326 0.94479 1.70004 1.11739 1.21800 1.46698 0.86242 0.80217 0.80334 0.78831 1.19910 1.20796 1.19922 1.17495 0.96635 0.87041 0.91992 1.21307 0.98379 0.95614 0.97409 1.21060 0.98575 0.95263 0.98299 1.21090 1.00108 1.00127 0.92231 1.21091 0.98354 0.94365 0.98406 1.19087 0.98401 0.94705 0.91799 1.18672 0.99677 0.93799 0.92689 1.21899 0.98083 0.94127 0.98101 1.21261 0.98082 1.00444 0.93415 1.21232 0.98886 0.94349 0.99187 1.21000 1.01097 0.95255 0.97124 1.21118 0.99206 0.99325 0.93242 0.92403 0.90141 0.91173 0.89050 0.89040 0.92105 0.85602 0.85656 0.85729 0.85639 0.84245 0.85416 0.86191 0.86231 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.23 59.84 0.61 1.58 16 2 N -0.58 -8.89 1.99 -120.61 -0.24 -9.13 16 3 C 0.54 10.32 5.35 -10.99 -0.06 10.26 16 4 O -0.50 -11.52 14.31 5.55 0.08 -11.44 16 5 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 6 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 C 0.08 2.12 5.49 -17.43 -0.10 2.02 16 10 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 11 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.16 2.33 4.40 -83.43 -0.37 1.96 16 16 C -0.11 -1.40 9.96 -39.43 -0.39 -1.80 16 17 C -0.11 -1.22 10.03 -39.55 -0.40 -1.62 16 18 C -0.12 -1.20 10.03 -39.60 -0.40 -1.60 16 19 C -0.10 -1.20 9.51 -39.28 -0.37 -1.58 16 20 C -0.04 -0.54 5.49 -104.73 -0.57 -1.11 16 21 C -0.05 -0.69 5.24 -104.91 -0.55 -1.24 16 22 C -0.10 -1.71 8.40 -39.24 -0.33 -2.04 16 23 C -0.11 -1.68 10.03 -39.63 -0.40 -2.08 16 24 C -0.12 -1.45 10.04 -39.52 -0.40 -1.84 16 25 C -0.13 -1.41 10.03 -39.63 -0.40 -1.80 16 26 C -0.11 -1.31 9.51 -39.24 -0.37 -1.69 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 29 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 30 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 31 H 0.09 1.73 8.11 -51.91 -0.42 1.31 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.22 8.04 -52.49 -0.42 0.79 16 37 H 0.14 2.73 4.27 -52.49 -0.22 2.51 16 38 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.15 8.04 -52.48 -0.42 0.73 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -33.88 361.88 -10.36 -44.24 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.13 Total: 3.80 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -4.03 Total: -20.19 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.49 Total: -34.29 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.88 -10.36 -44.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064815174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.394 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds