Wall clock time and date at job start Tue Mar 31 2020 15:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00338 * 2 1 4 4 O 1.21288 * 120.00190 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99836 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.46993 * 180.02562 * 5 3 2 7 7 C 1.76196 * 99.99913 * 180.02562 * 6 5 3 8 8 H 1.08000 * 120.00444 * 0.02562 * 7 6 5 9 9 C 1.38796 * 120.00130 * 179.97438 * 7 6 5 10 10 N 1.31634 * 120.00129 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 120.00330 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46690 * 60.00303 * 11 9 7 13 13 H 1.48500 * 109.47118 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.46850 * 300.00343 * 11 9 7 15 15 C 1.39737 * 119.99818 * 179.97438 * 2 1 3 16 16 C 1.38740 * 120.13554 * 90.29597 * 15 2 1 17 17 C 1.38139 * 120.05074 * 180.32057 * 16 15 2 18 18 C 1.38411 * 120.31754 * 359.68458 * 17 16 15 19 19 C 1.38013 * 120.26982 * 359.97438 * 18 17 16 20 20 C 1.39281 * 119.94934 * 0.02562 * 19 18 17 21 21 C 1.48306 * 120.16090 * 180.02562 * 20 19 18 22 22 C 1.39383 * 120.12213 * 129.73006 * 21 20 19 23 23 C 1.38001 * 119.86932 * 179.76857 * 22 21 20 24 24 C 1.38328 * 120.12633 * 0.48283 * 23 22 21 25 25 C 1.38322 * 120.25355 * 359.77196 * 24 23 22 26 26 C 1.38008 * 120.12367 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47408 * 270.00564 * 1 2 3 28 28 H 1.08997 * 109.47357 * 30.00085 * 1 2 3 29 29 H 1.09000 * 109.47863 * 150.00314 * 1 2 3 30 30 H 1.09000 * 109.47202 * 300.00511 * 5 3 2 31 31 H 1.09004 * 109.46843 * 60.00441 * 5 3 2 32 32 H 0.96997 * 120.00046 * 179.97438 * 10 9 7 33 33 H 1.08002 * 119.97335 * 0.02660 * 16 15 2 34 34 H 1.07997 * 119.84351 * 179.70145 * 17 16 15 35 35 H 1.07998 * 119.86491 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.02777 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.06060 * 359.97438 * 22 21 20 38 38 H 1.08006 * 119.93859 * 180.23169 * 23 22 21 39 39 H 1.08002 * 119.87252 * 179.74374 * 24 23 22 40 40 H 1.08002 * 119.93995 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.06058 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5617 3.8480 -0.0012 7 6 1.4417 5.2081 -0.0010 8 1 0.3764 5.0305 -0.0002 9 6 1.9284 6.5079 -0.0009 10 7 3.2268 6.7246 -0.0013 11 14 0.7410 7.9501 -0.0014 12 1 -0.1145 7.8872 1.2108 13 1 1.5072 9.2222 -0.0017 14 1 -0.1135 7.8871 -1.2142 15 6 2.1636 -1.2102 0.0005 16 6 2.5172 -1.8108 -1.1991 17 6 3.2021 -3.0105 -1.1965 18 6 3.5450 -3.6167 -0.0004 19 6 3.2060 -3.0273 1.2006 20 6 2.5155 -1.8177 1.2111 21 6 2.1494 -1.1799 2.4989 22 6 2.4506 0.1620 2.7255 23 6 2.1032 0.7516 3.9239 24 6 1.4663 0.0108 4.9032 25 6 1.1696 -1.3227 4.6859 26 6 1.5076 -1.9214 3.4892 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3635 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8908 31 1 0.7585 2.5302 0.8892 32 1 3.5670 7.6329 -0.0016 33 1 2.2527 -1.3425 -2.1356 34 1 3.4714 -3.4776 -2.1323 35 1 4.0808 -4.5544 -0.0070 36 1 3.4760 -3.5035 2.1316 37 1 2.9519 0.7401 1.9633 38 1 2.3328 1.7923 4.0991 39 1 1.2000 0.4752 5.8411 40 1 0.6726 -1.8964 5.4541 41 1 1.2751 -2.9625 3.3205 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064815174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:26 Heat of formation + Delta-G solvation = 10.430404 kcal Electronic energy + Delta-G solvation = -24876.491243 eV Core-core repulsion = 21426.028934 eV Total energy + Delta-G solvation = -3450.462309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89019 -39.95851 -39.16140 -36.57725 -34.60170 -33.64691 -32.17788 -31.78795 -30.40232 -29.54926 -27.74365 -27.56697 -24.48090 -24.02098 -23.18628 -22.06382 -20.77245 -19.63854 -18.64410 -18.05955 -17.54233 -17.35075 -16.89414 -16.76160 -16.19487 -15.98767 -15.65269 -15.49950 -15.08078 -14.63490 -14.46773 -14.37201 -14.28371 -14.19574 -13.82788 -13.53986 -13.45016 -13.23043 -13.17656 -12.88387 -12.81201 -12.65584 -12.39025 -11.97616 -11.80521 -11.76867 -11.14412 -11.04632 -10.31546 -10.31044 -10.00482 -9.85820 -9.81551 -9.22804 -8.69841 -8.35980 -6.14808 -0.11283 0.30806 0.45847 0.71740 1.21669 1.42311 1.42861 1.45810 1.53410 2.02812 2.25280 2.65787 2.90442 2.98164 3.23682 3.60181 3.72784 3.92885 4.04850 4.08841 4.11944 4.17918 4.19108 4.27055 4.37659 4.43535 4.46205 4.51115 4.59478 4.63158 4.69657 4.77345 4.89466 5.07287 5.11173 5.35150 5.39685 5.43465 5.48814 5.53766 5.58646 5.64755 5.70318 6.01874 6.07440 6.11455 6.18046 7.04969 7.07376 8.72977 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003764 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.723474 B = 7437.988415 C = 8587.938008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.569 5.569 3 C 0.542 3.458 4 O -0.552 6.552 5 C -0.123 4.123 6 S -0.141 6.141 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.016 3.984 10 N -0.911 5.911 11 Si 0.997 3.003 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.261 1.261 15 C 0.127 3.873 16 C -0.124 4.124 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.059 4.059 21 C -0.055 4.055 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.271 0.729 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.158 0.842 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -23.666 4.626 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.299 5.299 3 C 0.331 3.669 4 O -0.430 6.430 5 C -0.274 4.274 6 S 0.086 5.914 7 C -0.695 4.695 8 H 0.100 0.900 9 C -0.189 4.189 10 N -0.547 5.547 11 Si 0.818 3.182 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.186 1.186 15 C 0.037 3.963 16 C -0.143 4.143 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.060 4.060 21 C -0.055 4.055 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.123 4.123 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.164 0.836 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.162 0.838 40 H 0.176 0.824 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.362 -23.528 4.620 24.807 hybrid contribution -1.521 1.613 -0.199 2.226 sum -7.883 -21.914 4.421 23.705 Atomic orbital electron populations 1.22086 0.76332 1.04968 1.03050 1.45193 1.08107 1.02786 1.73852 1.20128 0.87308 0.84905 0.74512 1.90695 1.15448 1.87247 1.49563 1.23371 1.02919 0.94916 1.06234 1.85570 1.12060 0.96769 1.97013 1.23150 0.94601 0.92641 1.59137 0.90007 1.26102 0.97561 1.01574 0.93624 1.70175 1.14116 1.22560 1.47867 0.85030 0.77659 0.75936 0.79552 1.18634 1.20324 1.18588 1.17781 0.98427 0.86887 0.93192 1.21461 0.99250 0.96823 0.96793 1.21435 0.97164 0.94235 1.00024 1.21527 0.98880 1.00973 0.91299 1.21404 0.97467 0.93519 1.00045 1.19269 0.99509 0.95890 0.91354 1.18786 1.00019 0.92961 0.93709 1.21670 1.00141 0.95419 0.98057 1.21252 0.99699 1.00218 0.94141 1.21493 0.97871 0.94990 0.99174 1.21442 0.99629 0.94718 0.97551 1.21451 0.97775 1.00414 0.92617 0.91921 0.89603 0.88483 0.87259 0.87946 0.91959 0.85706 0.82776 0.82134 0.83593 0.88198 0.87080 0.83830 0.82441 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 10.23 127.77 1.31 3.03 16 2 N -0.57 -17.67 1.99 -653.87 -1.30 -18.98 16 3 C 0.54 21.91 5.35 87.66 0.47 22.38 16 4 O -0.55 -27.16 14.31 -3.06 -0.04 -27.21 16 5 C -0.12 -5.19 4.71 71.24 0.34 -4.86 16 6 S -0.14 -7.99 20.57 -56.49 -1.16 -9.16 16 7 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 C 0.02 0.93 5.49 84.86 0.47 1.40 16 10 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 11 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 15 C 0.13 3.73 4.40 38.41 0.17 3.90 16 16 C -0.12 -3.16 9.96 22.37 0.22 -2.93 16 17 C -0.11 -2.11 10.03 22.29 0.22 -1.89 16 18 C -0.11 -1.88 10.03 22.26 0.22 -1.66 16 19 C -0.11 -2.22 9.51 22.47 0.21 -2.00 16 20 C -0.06 -1.61 5.49 -19.93 -0.11 -1.72 16 21 C -0.05 -1.54 5.24 -20.05 -0.11 -1.65 16 22 C -0.13 -4.67 8.40 22.49 0.19 -4.49 16 23 C -0.13 -4.19 10.03 22.24 0.22 -3.96 16 24 C -0.12 -2.71 10.04 22.31 0.22 -2.49 16 25 C -0.12 -2.20 10.03 22.24 0.22 -1.98 16 26 C -0.10 -2.20 9.51 22.49 0.21 -1.99 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.81 6.44 -2.39 -0.02 1.79 16 29 H 0.10 1.66 8.05 -2.39 -0.02 1.64 16 30 H 0.11 4.14 7.40 -2.40 -0.02 4.13 16 31 H 0.10 4.03 8.11 -2.39 -0.02 4.01 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 33 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.15 2.37 8.04 -2.91 -0.02 2.34 16 37 H 0.10 4.30 4.27 -2.91 -0.01 4.29 16 38 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.15 2.23 8.04 -2.91 -0.02 2.21 16 Total: -1.00 -79.42 361.88 5.98 -73.44 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.04 Total: 23.98 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 5.13 Total: -31.82 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.02 Total: -75.01 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.16 kcal Total: -79.42 5.98 -73.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064815174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.872 kcal (2) G-P(sol) polarization free energy of solvation -79.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds