Wall clock time and date at job start Tue Mar 31 2020 15:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47602 * 2 1 4 4 C 1.50705 * 109.46931 * 119.99533 * 2 1 3 5 5 H 1.08005 * 119.99967 * 119.99826 * 4 2 1 6 6 C 1.37879 * 120.00240 * 299.99822 * 4 2 1 7 7 N 1.31514 * 119.99430 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00181 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46682 * 120.00321 * 8 6 4 11 11 H 1.48496 * 109.47055 * 240.00016 * 8 6 4 12 12 S 1.81397 * 109.47065 * 239.99169 * 2 1 3 13 13 C 1.76199 * 103.00007 * 71.34314 * 12 2 1 14 14 C 1.38786 * 120.10421 * 6.09620 * 13 12 2 15 15 C 1.38195 * 119.99371 * 179.97438 * 14 13 12 16 16 C 1.38308 * 120.20239 * 0.02562 * 15 14 13 17 17 C 1.38249 * 120.21090 * 359.97438 * 16 15 14 18 18 C 1.38668 * 120.00378 * 0.02562 * 17 16 15 19 19 N 1.40061 * 120.09910 * 180.02562 * 18 17 16 20 20 C 1.34780 * 120.00098 * 20.14037 * 19 18 17 21 21 O 1.21576 * 119.99929 * 5.98007 * 20 19 18 22 22 C 1.47820 * 120.00031 * 185.97983 * 20 19 18 23 23 C 1.39579 * 120.14543 * 359.72342 * 22 20 19 24 24 C 1.37959 * 119.84999 * 179.76542 * 23 22 20 25 25 C 1.38359 * 120.14451 * 0.51289 * 24 23 22 26 26 C 1.38364 * 120.29534 * 359.74010 * 25 24 23 27 27 C 1.37956 * 120.14647 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47439 * 180.49932 * 1 2 3 29 29 H 1.09005 * 109.46828 * 300.50193 * 1 2 3 30 30 H 1.09005 * 109.46768 * 60.49917 * 1 2 3 31 31 H 0.97004 * 119.99731 * 179.97438 * 7 6 4 32 32 H 1.08004 * 120.00238 * 359.96286 * 14 13 12 33 33 H 1.08001 * 119.89988 * 180.02562 * 15 14 13 34 34 H 1.07997 * 119.89532 * 179.70091 * 16 15 14 35 35 H 1.07993 * 119.99356 * 179.97438 * 17 16 15 36 36 H 0.97001 * 120.00711 * 200.14079 * 19 18 17 37 37 H 1.07997 * 120.07923 * 0.02562 * 23 22 20 38 38 H 1.07995 * 119.92912 * 180.27469 * 24 23 22 39 39 H 1.08006 * 119.85443 * 179.71996 * 25 24 23 40 40 H 1.08003 * 119.92779 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.07269 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1201 4.0081 9 1 3.1463 -2.2868 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8162 12 16 2.1346 -0.8553 -1.4810 13 6 1.7489 0.2748 -2.7766 14 6 1.2417 1.5313 -2.4764 15 6 0.9405 2.4160 -3.4943 16 6 1.1424 2.0535 -4.8137 17 6 1.6472 0.8040 -5.1224 18 6 1.9524 -0.0905 -4.1078 19 7 2.4645 -1.3567 -4.4182 20 6 3.0380 -1.5761 -5.6180 21 8 3.2092 -0.6511 -6.3882 22 6 3.4588 -2.9413 -5.9975 23 6 3.2690 -4.0046 -5.1133 24 6 3.6596 -5.2771 -5.4757 25 6 4.2480 -5.4988 -6.7081 26 6 4.4439 -4.4483 -7.5871 27 6 4.0535 -3.1718 -7.2392 28 1 -0.3634 -1.0276 0.0090 29 1 -0.3633 0.5216 0.8855 30 1 -0.3633 0.5061 -0.8945 31 1 0.7081 1.1611 3.4843 32 1 1.0822 1.8175 -1.4472 33 1 0.5462 3.3936 -3.2589 34 1 0.9007 2.7470 -5.6055 35 1 1.8031 0.5245 -6.1538 36 1 2.4064 -2.0758 -3.7698 37 1 2.8135 -3.8322 -4.1494 38 1 3.5093 -6.1014 -4.7944 39 1 4.5562 -6.4962 -6.9852 40 1 4.9042 -4.6281 -8.5475 41 1 4.2074 -2.3527 -7.9260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066801854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:36 Heat of formation + Delta-G solvation = 17.577858 kcal Electronic energy + Delta-G solvation = -24039.311074 eV Core-core repulsion = 20589.158702 eV Total energy + Delta-G solvation = -3450.152372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73747 -39.04416 -37.81717 -34.86548 -34.16076 -31.74141 -31.20440 -31.07616 -29.98002 -29.04322 -25.41696 -24.46335 -22.92833 -22.75842 -22.11893 -21.24978 -20.26803 -18.54723 -17.49792 -16.79075 -16.32468 -16.15697 -15.48161 -15.28730 -15.16952 -14.83057 -14.45140 -14.21044 -13.92899 -13.64590 -13.56710 -13.34524 -13.02476 -12.66381 -12.60086 -12.04759 -11.89590 -11.75451 -11.42823 -11.36484 -11.09806 -11.09075 -10.63030 -10.53101 -10.43922 -10.10872 -9.67081 -9.48189 -9.28172 -9.24133 -9.14866 -9.00571 -8.56595 -7.96325 -6.60197 -6.27136 -4.36380 0.55469 1.09651 1.58269 1.72983 2.38110 2.75896 3.04837 3.17578 3.25921 3.30407 3.57079 3.64062 4.13699 4.25346 4.44973 4.56416 4.66834 4.85108 5.05363 5.09233 5.20333 5.29102 5.34757 5.52465 5.58750 5.69651 5.79705 5.83069 6.05304 6.10724 6.15964 6.21524 6.46708 6.51436 6.57248 6.61401 6.68685 6.71240 6.74965 6.88023 7.25591 7.31585 7.45649 7.54846 7.71839 7.95078 8.05422 8.62771 9.28224 10.78974 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.003471 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.793170 B = 8064.741904 C =10056.300619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.102 3.898 3 H 0.053 0.947 4 C -0.512 4.512 5 H 0.068 0.932 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.180 6.180 13 C -0.093 4.093 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.125 4.125 18 C 0.149 3.851 19 N -0.652 5.652 20 C 0.557 3.443 21 O -0.521 6.521 22 C -0.134 4.134 23 C -0.083 4.083 24 C -0.126 4.126 25 C -0.095 4.095 26 C -0.130 4.130 27 C -0.059 4.059 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.414 0.586 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -7.595 -16.587 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.071 0.929 4 C -0.551 4.551 5 H 0.086 0.914 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.067 5.933 13 C -0.208 4.208 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.147 4.147 18 C 0.048 3.952 19 N -0.296 5.296 20 C 0.346 3.654 21 O -0.399 6.399 22 C -0.137 4.137 23 C -0.102 4.102 24 C -0.144 4.144 25 C -0.113 4.113 26 C -0.148 4.148 27 C -0.078 4.078 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.029 -8.037 -16.937 18.991 hybrid contribution -0.365 0.494 1.382 1.513 sum 2.663 -7.544 -15.555 17.492 Atomic orbital electron populations 1.22121 0.96200 1.00764 1.01128 1.21102 0.95622 0.97336 0.88427 0.92940 1.20672 1.32585 1.13279 0.88569 0.91420 1.24891 0.94620 0.94942 0.98884 1.69869 1.35792 1.22510 1.24108 0.86291 0.78715 0.79644 0.82005 1.19478 1.20686 1.20684 1.84964 1.76429 1.29733 1.02153 1.21707 1.05133 0.98876 0.95119 1.21281 0.99665 0.92162 1.00585 1.21044 1.01002 0.99385 0.92673 1.20961 1.00738 0.96314 0.96262 1.21424 0.99834 0.93684 0.99712 1.17252 1.00218 0.85935 0.91768 1.43441 1.56942 1.12098 1.17120 1.18360 0.77136 0.88606 0.81270 1.90681 1.54169 1.43770 1.51261 1.19885 1.04437 0.92646 0.96708 1.21444 0.97392 0.92594 0.98769 1.21151 0.99285 0.96865 0.97053 1.21410 0.96829 0.99294 0.93755 1.21165 1.01000 0.92475 1.00200 1.21286 0.94112 0.97540 0.94817 0.94106 0.88661 0.96121 0.92418 0.84429 0.86166 0.86155 0.83234 0.74759 0.85264 0.85108 0.85515 0.85265 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.56 37.16 0.32 -2.95 16 2 C 0.10 2.45 1.97 -27.88 -0.05 2.39 16 3 H 0.05 1.35 6.75 -51.93 -0.35 1.00 16 4 C -0.51 -13.38 8.58 -34.44 -0.30 -13.67 16 5 H 0.07 1.78 7.71 -52.48 -0.40 1.38 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -23.65 11.32 55.43 0.63 -23.02 16 8 Si 0.91 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 S -0.18 -3.73 19.87 -107.50 -2.14 -5.86 16 13 C -0.09 -1.79 6.05 -38.90 -0.24 -2.03 16 14 C -0.11 -2.09 8.11 -39.39 -0.32 -2.41 16 15 C -0.12 -1.92 10.04 -39.57 -0.40 -2.32 16 16 C -0.12 -1.84 10.04 -39.55 -0.40 -2.24 16 17 C -0.13 -2.10 8.77 -39.42 -0.35 -2.44 16 18 C 0.15 2.65 6.50 -83.46 -0.54 2.11 16 19 N -0.65 -10.25 5.17 -10.57 -0.05 -10.30 16 20 C 0.56 8.42 7.61 -12.34 -0.09 8.32 16 21 O -0.52 -8.94 13.29 5.30 0.07 -8.87 16 22 C -0.13 -1.64 5.87 -104.97 -0.62 -2.26 16 23 C -0.08 -0.88 9.54 -39.18 -0.37 -1.25 16 24 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 25 C -0.09 -0.74 10.04 -39.49 -0.40 -1.13 16 26 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 27 C -0.06 -0.63 9.60 -39.18 -0.38 -1.00 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 2.37 6.08 -51.93 -0.32 2.05 16 30 H 0.02 0.42 6.24 -51.93 -0.32 0.10 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.14 2.72 4.97 -52.48 -0.26 2.46 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.15 2.49 5.47 -52.49 -0.29 2.20 16 36 H 0.41 6.00 5.57 -40.82 -0.23 5.77 16 37 H 0.13 1.27 6.42 -52.49 -0.34 0.93 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.14 1.42 7.65 -52.49 -0.40 1.02 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -29.03 350.76 -10.82 -39.85 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.58 Total: 9.76 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -5.02 Total: -22.10 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.57 Total: -33.33 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.14 Total: -5.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.03 -10.82 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.432 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds