Wall clock time and date at job start Tue Mar 31 2020 15:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47602 * 2 1 4 4 C 1.50705 * 109.46931 * 119.99533 * 2 1 3 5 5 H 1.08005 * 119.99967 * 119.99826 * 4 2 1 6 6 C 1.37879 * 120.00240 * 299.99822 * 4 2 1 7 7 N 1.31514 * 119.99430 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00181 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46682 * 120.00321 * 8 6 4 11 11 H 1.48496 * 109.47055 * 240.00016 * 8 6 4 12 12 S 1.81397 * 109.47065 * 239.99169 * 2 1 3 13 13 C 1.76199 * 103.00007 * 71.34314 * 12 2 1 14 14 C 1.38786 * 120.10421 * 6.09620 * 13 12 2 15 15 C 1.38195 * 119.99371 * 179.97438 * 14 13 12 16 16 C 1.38308 * 120.20239 * 0.02562 * 15 14 13 17 17 C 1.38249 * 120.21090 * 359.97438 * 16 15 14 18 18 C 1.38668 * 120.00378 * 0.02562 * 17 16 15 19 19 N 1.40061 * 120.09910 * 180.02562 * 18 17 16 20 20 C 1.34780 * 120.00098 * 20.14037 * 19 18 17 21 21 O 1.21576 * 119.99929 * 5.98007 * 20 19 18 22 22 C 1.47820 * 120.00031 * 185.97983 * 20 19 18 23 23 C 1.39579 * 120.14543 * 359.72342 * 22 20 19 24 24 C 1.37959 * 119.84999 * 179.76542 * 23 22 20 25 25 C 1.38359 * 120.14451 * 0.51289 * 24 23 22 26 26 C 1.38364 * 120.29534 * 359.74010 * 25 24 23 27 27 C 1.37956 * 120.14647 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47439 * 180.49932 * 1 2 3 29 29 H 1.09005 * 109.46828 * 300.50193 * 1 2 3 30 30 H 1.09005 * 109.46768 * 60.49917 * 1 2 3 31 31 H 0.97004 * 119.99731 * 179.97438 * 7 6 4 32 32 H 1.08004 * 120.00238 * 359.96286 * 14 13 12 33 33 H 1.08001 * 119.89988 * 180.02562 * 15 14 13 34 34 H 1.07997 * 119.89532 * 179.70091 * 16 15 14 35 35 H 1.07993 * 119.99356 * 179.97438 * 17 16 15 36 36 H 0.97001 * 120.00711 * 200.14079 * 19 18 17 37 37 H 1.07997 * 120.07923 * 0.02562 * 23 22 20 38 38 H 1.07995 * 119.92912 * 180.27469 * 24 23 22 39 39 H 1.08006 * 119.85443 * 179.71996 * 25 24 23 40 40 H 1.08003 * 119.92779 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.07269 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1201 4.0081 9 1 3.1463 -2.2868 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8162 12 16 2.1346 -0.8553 -1.4810 13 6 1.7489 0.2748 -2.7766 14 6 1.2417 1.5313 -2.4764 15 6 0.9405 2.4160 -3.4943 16 6 1.1424 2.0535 -4.8137 17 6 1.6472 0.8040 -5.1224 18 6 1.9524 -0.0905 -4.1078 19 7 2.4645 -1.3567 -4.4182 20 6 3.0380 -1.5761 -5.6180 21 8 3.2092 -0.6511 -6.3882 22 6 3.4588 -2.9413 -5.9975 23 6 3.2690 -4.0046 -5.1133 24 6 3.6596 -5.2771 -5.4757 25 6 4.2480 -5.4988 -6.7081 26 6 4.4439 -4.4483 -7.5871 27 6 4.0535 -3.1718 -7.2392 28 1 -0.3634 -1.0276 0.0090 29 1 -0.3633 0.5216 0.8855 30 1 -0.3633 0.5061 -0.8945 31 1 0.7081 1.1611 3.4843 32 1 1.0822 1.8175 -1.4472 33 1 0.5462 3.3936 -3.2589 34 1 0.9007 2.7470 -5.6055 35 1 1.8031 0.5245 -6.1538 36 1 2.4064 -2.0758 -3.7698 37 1 2.8135 -3.8322 -4.1494 38 1 3.5093 -6.1014 -4.7944 39 1 4.5562 -6.4962 -6.9852 40 1 4.9042 -4.6281 -8.5475 41 1 4.2074 -2.3527 -7.9260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066801854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:35 Heat of formation + Delta-G solvation = 4.210947 kcal Electronic energy + Delta-G solvation = -24039.890707 eV Core-core repulsion = 20589.158702 eV Total energy + Delta-G solvation = -3450.732005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89110 -40.03054 -38.95870 -36.33261 -35.88762 -32.87333 -32.54220 -31.92848 -31.59747 -30.24961 -27.39625 -25.48164 -24.12620 -23.81741 -23.43728 -22.79901 -21.39238 -19.74779 -18.83038 -18.16162 -17.94848 -17.15430 -16.99183 -16.52405 -16.38117 -15.98750 -15.64284 -15.53646 -15.12701 -15.02529 -14.73555 -14.42586 -14.31538 -14.23931 -13.78285 -13.54509 -13.28407 -13.06455 -12.89802 -12.82448 -12.51867 -12.45294 -12.25097 -12.06009 -11.89508 -11.63784 -11.35926 -10.91036 -10.85783 -10.62358 -10.47977 -10.03592 -9.98393 -9.30433 -8.25727 -8.18019 -6.42027 -0.32907 0.26577 0.38070 0.39531 0.79408 1.40338 1.42844 1.54545 1.70630 1.78366 1.93878 2.37642 2.74197 2.88379 3.04554 3.44350 3.83115 3.90290 3.98337 4.14455 4.21662 4.35342 4.42453 4.45178 4.48292 4.52018 4.59384 4.80132 4.80354 4.85572 4.87629 5.03067 5.11766 5.26985 5.31757 5.32577 5.41876 5.42111 5.48100 5.54864 5.57552 5.74157 5.91593 5.99862 6.00703 6.24671 6.60610 6.86204 7.25764 8.80356 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.003471 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.793170 B = 8064.741904 C =10056.300619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.100 3.900 3 H 0.026 0.974 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.274 1.274 12 S -0.175 6.175 13 C -0.117 4.117 14 C -0.127 4.127 15 C -0.118 4.118 16 C -0.105 4.105 17 C -0.135 4.135 18 C 0.145 3.855 19 N -0.654 5.654 20 C 0.556 3.444 21 O -0.547 6.547 22 C -0.159 4.159 23 C -0.094 4.094 24 C -0.128 4.128 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.070 4.070 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.269 0.731 32 H 0.120 0.880 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.417 0.583 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.902 -9.035 -18.108 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 H 0.044 0.956 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.200 1.200 12 S 0.072 5.928 13 C -0.232 4.232 14 C -0.151 4.151 15 C -0.139 4.139 16 C -0.126 4.126 17 C -0.156 4.156 18 C 0.044 3.956 19 N -0.298 5.298 20 C 0.347 3.653 21 O -0.427 6.427 22 C -0.162 4.162 23 C -0.113 4.113 24 C -0.146 4.146 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.089 4.089 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.256 0.744 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.505 -9.483 -18.476 21.061 hybrid contribution -0.487 0.933 1.681 1.983 sum 3.018 -8.550 -16.795 19.086 Atomic orbital electron populations 1.21922 0.95671 1.00287 1.00763 1.20853 0.96028 0.96117 0.89795 0.95565 1.20926 1.32931 1.13388 0.89945 0.92157 1.25665 0.94665 0.95554 1.01532 1.69973 1.36390 1.23452 1.24834 0.85349 0.78316 0.78589 0.78520 1.19195 1.20293 1.19967 1.84669 1.77042 1.29858 1.01277 1.21692 1.07447 0.99121 0.94982 1.21285 1.00568 0.92692 1.00565 1.21345 1.00225 1.00029 0.92265 1.21388 0.98294 0.96007 0.96921 1.21632 1.00131 0.94335 0.99535 1.17444 0.99861 0.86948 0.91389 1.43504 1.57042 1.11565 1.17652 1.18878 0.76215 0.89694 0.80492 1.90642 1.55338 1.44913 1.51815 1.19788 1.06835 0.91362 0.98170 1.21552 0.97887 0.93225 0.98613 1.21491 0.98582 0.96501 0.98002 1.21862 0.94872 1.00684 0.92789 1.21515 1.00074 0.91407 1.01479 1.21411 0.94517 0.98785 0.94228 0.94396 0.90787 0.94667 0.92190 0.86253 0.83233 0.82399 0.83024 0.74389 0.85403 0.82813 0.82068 0.82385 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.56 71.98 0.62 -5.38 16 2 C 0.10 4.97 1.97 29.85 0.06 5.02 16 3 H 0.03 1.43 6.75 -2.39 -0.02 1.41 16 4 C -0.53 -28.61 8.58 25.60 0.22 -28.40 16 5 H 0.06 3.25 7.71 -2.91 -0.02 3.23 16 6 C 0.03 1.47 5.30 84.66 0.45 1.92 16 7 N -0.91 -49.57 11.32 21.45 0.24 -49.33 16 8 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 S -0.17 -7.47 19.87 -56.49 -1.12 -8.59 16 13 C -0.12 -4.61 6.05 22.71 0.14 -4.48 16 14 C -0.13 -4.78 8.11 22.39 0.18 -4.60 16 15 C -0.12 -3.60 10.04 22.28 0.22 -3.37 16 16 C -0.11 -2.97 10.04 22.29 0.22 -2.75 16 17 C -0.13 -4.43 8.77 22.38 0.20 -4.24 16 18 C 0.14 5.20 6.50 38.24 0.25 5.45 16 19 N -0.65 -21.04 5.17 -305.61 -1.58 -22.62 16 20 C 0.56 17.14 7.61 86.78 0.66 17.80 16 21 O -0.55 -19.09 13.29 -3.96 -0.05 -19.14 16 22 C -0.16 -3.89 5.87 -20.09 -0.12 -4.01 16 23 C -0.09 -1.93 9.54 22.53 0.21 -1.72 16 24 C -0.13 -1.92 10.03 22.23 0.22 -1.69 16 25 C -0.08 -1.02 10.04 22.33 0.22 -0.79 16 26 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 27 C -0.07 -1.45 9.60 22.53 0.22 -1.23 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 3.81 6.08 -2.38 -0.01 3.80 16 30 H 0.03 1.50 6.24 -2.38 -0.01 1.49 16 31 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.12 4.92 4.97 -2.91 -0.01 4.90 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.15 4.98 5.47 -2.91 -0.02 4.96 16 36 H 0.42 12.50 5.57 -92.71 -0.52 11.98 16 37 H 0.13 2.54 6.42 -2.91 -0.02 2.52 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 40 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.13 2.74 7.65 -2.91 -0.02 2.72 16 Total: -1.00 -64.34 350.76 4.27 -60.07 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.56 Total: 29.74 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 4.20 Total: -34.02 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.34 Total: -71.95 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.12 Total: -8.59 kcal Total: -64.34 4.27 -60.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.278 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds