Wall clock time and date at job start Tue Mar 31 2020 15:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46946 * 2 1 4 4 C 1.50700 * 109.47304 * 239.99533 * 2 1 3 5 5 H 1.07997 * 119.99984 * 245.03093 * 4 2 1 6 6 C 1.37876 * 119.99398 * 65.03732 * 4 2 1 7 7 N 1.31519 * 119.99574 * 197.46091 * 6 4 2 8 8 Si 1.86800 * 120.00462 * 17.46292 * 6 4 2 9 9 H 1.48500 * 109.47205 * 95.44234 * 8 6 4 10 10 H 1.48498 * 109.46898 * 215.44048 * 8 6 4 11 11 H 1.48501 * 109.47087 * 335.43812 * 8 6 4 12 12 S 1.81410 * 109.47015 * 119.99420 * 2 1 3 13 13 C 1.76195 * 103.00078 * 285.12957 * 12 2 1 14 14 C 1.38788 * 120.10588 * 359.46198 * 13 12 2 15 15 C 1.38198 * 119.98675 * 179.70082 * 14 13 12 16 16 C 1.38301 * 120.20767 * 0.57297 * 15 14 13 17 17 C 1.38247 * 120.20881 * 359.72396 * 16 15 14 18 18 C 1.38672 * 120.01026 * 359.97438 * 17 16 15 19 19 N 1.40055 * 120.10358 * 180.02562 * 18 17 16 20 20 C 1.34786 * 120.00027 * 30.39619 * 19 18 17 21 21 O 1.21571 * 119.99383 * 356.15084 * 20 19 18 22 22 C 1.47811 * 120.00040 * 176.15704 * 20 19 18 23 23 C 1.39596 * 120.14371 * 359.72124 * 22 20 19 24 24 C 1.37959 * 119.84513 * 179.71997 * 23 22 20 25 25 C 1.38353 * 120.14915 * 0.55698 * 24 23 22 26 26 C 1.38369 * 120.29520 * 359.72217 * 25 24 23 27 27 C 1.37949 * 120.14653 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47438 * 304.71367 * 1 2 3 29 29 H 1.09005 * 109.47027 * 64.71714 * 1 2 3 30 30 H 1.09003 * 109.47107 * 184.71706 * 1 2 3 31 31 H 0.96996 * 119.99852 * 179.97438 * 7 6 4 32 32 H 1.07993 * 120.00229 * 359.96921 * 14 13 12 33 33 H 1.08001 * 119.89790 * 180.31962 * 15 14 13 34 34 H 1.07998 * 119.89804 * 179.74771 * 16 15 14 35 35 H 1.08006 * 119.99717 * 179.97438 * 17 16 15 36 36 H 0.96994 * 120.00049 * 210.38810 * 19 18 17 37 37 H 1.07996 * 120.07144 * 359.97438 * 23 22 20 38 38 H 1.08004 * 119.91986 * 180.27121 * 24 23 22 39 39 H 1.08002 * 119.85198 * 179.69334 * 25 24 23 40 40 H 1.08004 * 119.92470 * 179.97438 * 26 25 24 41 41 H 1.08002 * 120.07742 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5846 -1.6335 -1.1333 6 6 1.7870 -0.1820 -2.4800 7 7 1.9077 -0.9384 -3.5491 8 14 1.2832 1.6083 -2.6546 9 1 2.4834 2.4346 -2.9407 10 1 0.3123 1.7427 -3.7701 11 1 0.6534 2.0707 -1.3917 12 16 2.1346 -0.8550 1.4813 13 6 1.8443 0.3188 2.7628 14 6 1.2834 1.5524 2.4629 15 6 1.0511 2.4689 3.4709 16 6 1.3866 2.1658 4.7779 17 6 1.9514 0.9419 5.0851 18 6 2.1827 0.0133 4.0816 19 7 2.7542 -1.2274 4.3907 20 6 2.5347 -1.7889 5.5962 21 8 1.8992 -1.1875 6.4402 22 6 3.0669 -3.1358 5.8921 23 6 3.7923 -3.8314 4.9232 24 6 4.2911 -5.0857 5.2080 25 6 4.0640 -5.6591 6.4464 26 6 3.3409 -4.9775 7.4092 27 6 2.8418 -3.7200 7.1397 28 1 -0.3634 0.5852 0.8447 29 1 -0.3633 0.4389 -0.9293 30 1 -0.3633 -1.0242 0.0845 31 1 1.7347 -0.5667 -4.4282 32 1 1.0247 1.7943 1.4428 33 1 0.6098 3.4264 3.2366 34 1 1.2066 2.8873 5.5611 35 1 2.2125 0.7090 6.1069 36 1 3.3079 -1.6827 3.7373 37 1 3.9660 -3.3868 3.9544 38 1 4.8562 -5.6231 4.4607 39 1 4.4526 -6.6434 6.6625 40 1 3.1669 -5.4309 8.3739 41 1 2.2772 -3.1891 7.8919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066801855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:38 Heat of formation + Delta-G solvation = 21.436218 kcal Electronic energy + Delta-G solvation = -24130.092586 eV Core-core repulsion = 20680.107524 eV Total energy + Delta-G solvation = -3449.985061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74251 -39.08236 -37.89077 -34.92599 -34.16469 -31.78214 -31.52747 -31.18876 -30.44513 -29.13308 -25.36099 -24.50327 -22.94899 -22.81903 -22.23810 -21.24574 -20.32754 -18.58961 -17.61405 -16.85710 -16.68275 -16.31792 -15.50092 -15.33072 -15.23044 -14.81249 -14.50433 -14.18256 -13.98159 -13.80163 -13.67751 -13.48378 -13.07005 -12.80114 -12.69578 -12.25000 -12.18323 -11.92802 -11.71881 -11.38833 -11.35923 -11.15559 -10.64362 -10.57327 -10.35005 -9.90192 -9.78418 -9.70394 -9.29770 -9.27263 -9.23845 -9.17964 -8.63897 -8.13367 -6.73526 -6.34320 -4.32630 0.55824 1.10427 1.46438 1.59802 2.21900 2.71311 3.01029 3.12102 3.21437 3.24880 3.34950 3.63662 3.99060 4.20867 4.44186 4.57096 4.67772 4.85405 4.95457 5.09486 5.15558 5.20516 5.23400 5.46707 5.51950 5.68107 5.69687 5.73329 6.03744 6.04794 6.10779 6.12807 6.16982 6.25473 6.31896 6.38265 6.44152 6.58783 6.61592 6.68306 6.74419 7.06453 7.17904 7.33665 7.38063 8.02529 8.14687 8.69345 9.25291 10.77145 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.003557 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.030889 B = 7870.766431 C = 9610.465081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.049 0.951 4 C -0.521 4.521 5 H 0.084 0.916 6 C 0.091 3.909 7 N -0.877 5.877 8 Si 0.863 3.137 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.257 1.257 12 S -0.134 6.134 13 C -0.097 4.097 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.110 4.110 18 C 0.148 3.852 19 N -0.656 5.656 20 C 0.560 3.440 21 O -0.523 6.523 22 C -0.134 4.134 23 C -0.082 4.082 24 C -0.125 4.125 25 C -0.094 4.094 26 C -0.131 4.131 27 C -0.059 4.059 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.413 0.587 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -2.982 18.848 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 H 0.067 0.933 4 C -0.560 4.560 5 H 0.102 0.898 6 C -0.116 4.116 7 N -0.512 5.512 8 Si 0.689 3.311 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.181 1.181 12 S 0.114 5.886 13 C -0.212 4.212 14 C -0.147 4.147 15 C -0.136 4.136 16 C -0.145 4.145 17 C -0.132 4.132 18 C 0.047 3.953 19 N -0.300 5.300 20 C 0.349 3.651 21 O -0.400 6.400 22 C -0.137 4.137 23 C -0.101 4.101 24 C -0.143 4.143 25 C -0.112 4.112 26 C -0.149 4.149 27 C -0.078 4.078 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.252 0.748 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.006 -3.822 19.170 19.777 hybrid contribution -0.546 1.948 -0.875 2.204 sum 2.460 -1.874 18.295 18.554 Atomic orbital electron populations 1.22440 0.96466 1.01681 0.99853 1.21350 0.95298 0.97721 0.92320 0.93330 1.20295 1.38147 1.10431 0.87084 0.89810 1.24783 0.94031 0.97512 0.95224 1.69942 1.47235 1.35319 0.98730 0.87122 0.79056 0.86203 0.78681 1.20124 1.20732 1.18124 1.85103 1.78261 1.24608 1.00637 1.21909 1.03399 0.99631 0.96269 1.21234 1.00423 0.92655 1.00340 1.21035 1.00580 0.99170 0.92810 1.20959 1.00631 0.96538 0.96325 1.21264 1.00256 0.92149 0.99500 1.17172 1.00373 0.85723 0.92009 1.43386 1.50180 1.19631 1.16823 1.18359 0.79499 0.85662 0.81601 1.90722 1.39920 1.63232 1.46165 1.19861 1.02970 0.94656 0.96238 1.21448 0.95259 0.94941 0.98447 1.21162 1.00458 0.95328 0.97370 1.21415 0.96754 0.99700 0.93356 1.21163 0.98926 0.94847 0.99930 1.21278 0.96479 0.94621 0.95390 0.94802 0.92504 0.92075 0.92081 0.84868 0.86143 0.86025 0.83826 0.74846 0.85227 0.85054 0.85500 0.85279 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.18 37.16 0.30 -2.75 16 2 C 0.06 1.39 1.50 -27.88 -0.04 1.35 16 3 H 0.05 1.10 5.25 -51.93 -0.27 0.82 16 4 C -0.52 -13.83 8.99 -34.44 -0.31 -14.14 16 5 H 0.08 2.43 7.96 -52.49 -0.42 2.02 16 6 C 0.09 2.45 5.30 -17.82 -0.09 2.35 16 7 N -0.88 -25.19 13.96 55.43 0.77 -24.41 16 8 Si 0.86 19.84 25.82 -169.99 -4.39 15.45 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.26 -5.50 5.65 56.52 0.32 -5.18 16 12 S -0.13 -2.66 20.01 -107.50 -2.15 -4.81 16 13 C -0.10 -1.75 6.12 -38.89 -0.24 -1.99 16 14 C -0.12 -2.11 8.32 -39.39 -0.33 -2.43 16 15 C -0.12 -1.70 10.04 -39.57 -0.40 -2.10 16 16 C -0.12 -1.73 10.04 -39.56 -0.40 -2.13 16 17 C -0.11 -1.74 8.73 -39.42 -0.34 -2.08 16 18 C 0.15 2.48 6.39 -83.46 -0.53 1.95 16 19 N -0.66 -9.80 5.04 -10.57 -0.05 -9.85 16 20 C 0.56 8.21 7.64 -12.34 -0.09 8.11 16 21 O -0.52 -8.77 13.53 5.30 0.07 -8.69 16 22 C -0.13 -1.62 5.87 -104.97 -0.62 -2.24 16 23 C -0.08 -0.86 9.54 -39.18 -0.37 -1.24 16 24 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 25 C -0.09 -0.74 10.04 -39.49 -0.40 -1.13 16 26 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 27 C -0.06 -0.62 9.60 -39.18 -0.38 -1.00 16 28 H 0.03 0.63 6.22 -51.93 -0.32 0.31 16 29 H 0.06 1.21 5.29 -51.93 -0.27 0.94 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.13 2.39 4.70 -52.49 -0.25 2.14 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.14 2.25 5.89 -52.48 -0.31 1.94 16 36 H 0.41 5.62 5.86 -40.82 -0.24 5.38 16 37 H 0.13 1.25 6.41 -52.49 -0.34 0.92 16 38 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -30.34 346.56 -10.13 -40.47 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.58 Total: 9.07 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -5.03 Total: -22.45 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.72 Total: -34.26 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.39 Total: 15.45 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.15 Total: -4.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.34 -10.13 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.905 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds