Wall clock time and date at job start Tue Mar 31 2020 15:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46946 * 2 1 4 4 C 1.50700 * 109.47304 * 239.99533 * 2 1 3 5 5 H 1.07997 * 119.99984 * 245.03093 * 4 2 1 6 6 C 1.37876 * 119.99398 * 65.03732 * 4 2 1 7 7 N 1.31519 * 119.99574 * 197.46091 * 6 4 2 8 8 Si 1.86800 * 120.00462 * 17.46292 * 6 4 2 9 9 H 1.48500 * 109.47205 * 95.44234 * 8 6 4 10 10 H 1.48498 * 109.46898 * 215.44048 * 8 6 4 11 11 H 1.48501 * 109.47087 * 335.43812 * 8 6 4 12 12 S 1.81410 * 109.47015 * 119.99420 * 2 1 3 13 13 C 1.76195 * 103.00078 * 285.12957 * 12 2 1 14 14 C 1.38788 * 120.10588 * 359.46198 * 13 12 2 15 15 C 1.38198 * 119.98675 * 179.70082 * 14 13 12 16 16 C 1.38301 * 120.20767 * 0.57297 * 15 14 13 17 17 C 1.38247 * 120.20881 * 359.72396 * 16 15 14 18 18 C 1.38672 * 120.01026 * 359.97438 * 17 16 15 19 19 N 1.40055 * 120.10358 * 180.02562 * 18 17 16 20 20 C 1.34786 * 120.00027 * 30.39619 * 19 18 17 21 21 O 1.21571 * 119.99383 * 356.15084 * 20 19 18 22 22 C 1.47811 * 120.00040 * 176.15704 * 20 19 18 23 23 C 1.39596 * 120.14371 * 359.72124 * 22 20 19 24 24 C 1.37959 * 119.84513 * 179.71997 * 23 22 20 25 25 C 1.38353 * 120.14915 * 0.55698 * 24 23 22 26 26 C 1.38369 * 120.29520 * 359.72217 * 25 24 23 27 27 C 1.37949 * 120.14653 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47438 * 304.71367 * 1 2 3 29 29 H 1.09005 * 109.47027 * 64.71714 * 1 2 3 30 30 H 1.09003 * 109.47107 * 184.71706 * 1 2 3 31 31 H 0.96996 * 119.99852 * 179.97438 * 7 6 4 32 32 H 1.07993 * 120.00229 * 359.96921 * 14 13 12 33 33 H 1.08001 * 119.89790 * 180.31962 * 15 14 13 34 34 H 1.07998 * 119.89804 * 179.74771 * 16 15 14 35 35 H 1.08006 * 119.99717 * 179.97438 * 17 16 15 36 36 H 0.96994 * 120.00049 * 210.38810 * 19 18 17 37 37 H 1.07996 * 120.07144 * 359.97438 * 23 22 20 38 38 H 1.08004 * 119.91986 * 180.27121 * 24 23 22 39 39 H 1.08002 * 119.85198 * 179.69334 * 25 24 23 40 40 H 1.08004 * 119.92470 * 179.97438 * 26 25 24 41 41 H 1.08002 * 120.07742 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5846 -1.6335 -1.1333 6 6 1.7870 -0.1820 -2.4800 7 7 1.9077 -0.9384 -3.5491 8 14 1.2832 1.6083 -2.6546 9 1 2.4834 2.4346 -2.9407 10 1 0.3123 1.7427 -3.7701 11 1 0.6534 2.0707 -1.3917 12 16 2.1346 -0.8550 1.4813 13 6 1.8443 0.3188 2.7628 14 6 1.2834 1.5524 2.4629 15 6 1.0511 2.4689 3.4709 16 6 1.3866 2.1658 4.7779 17 6 1.9514 0.9419 5.0851 18 6 2.1827 0.0133 4.0816 19 7 2.7542 -1.2274 4.3907 20 6 2.5347 -1.7889 5.5962 21 8 1.8992 -1.1875 6.4402 22 6 3.0669 -3.1358 5.8921 23 6 3.7923 -3.8314 4.9232 24 6 4.2911 -5.0857 5.2080 25 6 4.0640 -5.6591 6.4464 26 6 3.3409 -4.9775 7.4092 27 6 2.8418 -3.7200 7.1397 28 1 -0.3634 0.5852 0.8447 29 1 -0.3633 0.4389 -0.9293 30 1 -0.3633 -1.0242 0.0845 31 1 1.7347 -0.5667 -4.4282 32 1 1.0247 1.7943 1.4428 33 1 0.6098 3.4264 3.2366 34 1 1.2066 2.8873 5.5611 35 1 2.2125 0.7090 6.1069 36 1 3.3079 -1.6827 3.7373 37 1 3.9660 -3.3868 3.9544 38 1 4.8562 -5.6231 4.4607 39 1 4.4526 -6.6434 6.6625 40 1 3.1669 -5.4309 8.3739 41 1 2.2772 -3.1891 7.8919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066801855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:38 Heat of formation + Delta-G solvation = 5.535573 kcal Electronic energy + Delta-G solvation = -24130.782089 eV Core-core repulsion = 20680.107524 eV Total energy + Delta-G solvation = -3450.674565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84386 -40.03684 -38.95987 -36.33139 -35.84206 -33.44889 -32.57586 -31.94640 -31.80221 -30.25228 -27.30316 -25.48802 -24.08664 -23.85687 -23.44509 -22.74001 -21.40692 -19.76059 -19.05541 -18.37757 -18.03455 -17.15787 -16.93384 -16.50652 -16.40332 -16.04299 -15.62626 -15.50484 -15.25621 -15.10225 -14.82348 -14.53856 -14.34498 -14.30493 -13.94773 -13.69288 -13.56047 -13.16973 -12.93101 -12.85039 -12.52558 -12.42765 -12.09466 -12.06184 -11.68432 -11.67120 -11.46049 -10.97489 -10.87833 -10.74016 -10.55684 -10.03895 -9.98647 -9.36603 -8.41799 -8.22940 -6.45039 -0.31091 0.25013 0.36862 0.38433 0.70242 1.30637 1.36285 1.43789 1.68042 1.74021 1.93126 2.27487 2.72729 2.87075 2.91546 3.47414 3.83041 3.87878 3.97960 4.14387 4.21251 4.30251 4.35355 4.42551 4.44690 4.48266 4.48950 4.51389 4.63417 4.80361 4.84787 4.94283 5.02713 5.12806 5.24938 5.31103 5.34132 5.40906 5.41603 5.42993 5.47996 5.54536 5.91287 5.98620 6.06048 6.23476 6.55064 6.88438 7.16242 8.73682 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.003557 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.030889 B = 7870.766431 C = 9610.465081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 H 0.053 0.947 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.038 3.962 7 N -0.926 5.926 8 Si 0.926 3.074 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.230 1.230 12 S -0.148 6.148 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.121 4.121 18 C 0.140 3.860 19 N -0.657 5.657 20 C 0.558 3.442 21 O -0.550 6.550 22 C -0.158 4.158 23 C -0.094 4.094 24 C -0.129 4.129 25 C -0.085 4.085 26 C -0.127 4.127 27 C -0.071 4.071 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.272 0.728 32 H 0.127 0.873 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.416 0.584 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 -1.936 21.072 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 H 0.071 0.929 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.164 4.164 7 N -0.563 5.563 8 Si 0.748 3.252 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.152 1.152 12 S 0.099 5.901 13 C -0.231 4.231 14 C -0.158 4.158 15 C -0.131 4.131 16 C -0.129 4.129 17 C -0.142 4.142 18 C 0.039 3.961 19 N -0.301 5.301 20 C 0.349 3.651 21 O -0.429 6.429 22 C -0.161 4.161 23 C -0.112 4.112 24 C -0.147 4.147 25 C -0.103 4.103 26 C -0.145 4.145 27 C -0.090 4.090 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.176 0.824 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.641 -2.776 21.419 21.759 hybrid contribution -0.357 1.509 -1.410 2.096 sum 2.284 -1.267 20.008 20.178 Atomic orbital electron populations 1.22340 0.95164 1.01627 1.00700 1.21170 0.96202 0.97485 0.91924 0.92904 1.20449 1.37588 1.09337 0.89271 0.94025 1.25641 0.94095 1.01959 0.94680 1.70068 1.49237 1.37552 0.99464 0.86123 0.78964 0.80298 0.79820 1.19816 1.20395 1.15228 1.85016 1.79140 1.25464 1.00529 1.21843 1.05710 0.99842 0.95735 1.21345 1.00758 0.92861 1.00848 1.21377 0.99689 0.99826 0.92197 1.21388 0.98223 0.96162 0.97161 1.21438 1.00805 0.92819 0.99174 1.17393 1.00275 0.86565 0.91840 1.43448 1.50145 1.19348 1.17168 1.18822 0.78877 0.86448 0.80962 1.90683 1.41278 1.64166 1.46802 1.19797 1.04891 0.93803 0.97618 1.21549 0.95596 0.95896 0.98194 1.21487 1.00124 0.94598 0.98506 1.21850 0.95256 1.00740 0.92417 1.21512 0.97905 0.93749 1.01322 1.21409 0.97016 0.95768 0.94771 0.92370 0.92775 0.92982 0.91856 0.85503 0.82788 0.82469 0.83921 0.74491 0.85421 0.83000 0.82151 0.82395 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 8.18 71.98 0.59 -5.16 16 2 C 0.06 2.76 1.50 29.85 0.04 2.80 16 3 H 0.05 2.34 5.25 -2.39 -0.01 2.32 16 4 C -0.53 -28.98 8.99 25.60 0.23 -28.75 16 5 H 0.04 2.57 7.96 -2.91 -0.02 2.55 16 6 C 0.04 2.10 5.30 84.65 0.45 2.55 16 7 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 8 Si 0.93 40.68 25.82 68.60 1.77 42.45 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.23 -8.99 5.65 99.48 0.56 -8.42 16 12 S -0.15 -6.01 20.01 -56.49 -1.13 -7.14 16 13 C -0.12 -4.17 6.12 22.71 0.14 -4.03 16 14 C -0.13 -4.38 8.32 22.39 0.19 -4.19 16 15 C -0.11 -2.88 10.04 22.28 0.22 -2.66 16 16 C -0.11 -2.72 10.04 22.29 0.22 -2.49 16 17 C -0.12 -3.66 8.73 22.38 0.20 -3.46 16 18 C 0.14 4.68 6.39 38.24 0.24 4.92 16 19 N -0.66 -20.13 5.04 -305.62 -1.54 -21.67 16 20 C 0.56 16.79 7.64 86.77 0.66 17.46 16 21 O -0.55 -18.76 13.53 -3.94 -0.05 -18.82 16 22 C -0.16 -3.87 5.87 -20.09 -0.12 -3.99 16 23 C -0.09 -1.96 9.54 22.53 0.21 -1.75 16 24 C -0.13 -2.05 10.03 22.23 0.22 -1.82 16 25 C -0.08 -1.08 10.04 22.33 0.22 -0.86 16 26 C -0.13 -1.83 10.03 22.23 0.22 -1.61 16 27 C -0.07 -1.47 9.60 22.53 0.22 -1.25 16 28 H 0.06 2.09 6.22 -2.39 -0.01 2.08 16 29 H 0.05 2.23 5.29 -2.38 -0.01 2.22 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.13 4.28 4.70 -2.91 -0.01 4.26 16 33 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.14 4.37 5.89 -2.91 -0.02 4.36 16 36 H 0.42 11.88 5.86 -92.71 -0.54 11.33 16 37 H 0.13 2.60 6.41 -2.91 -0.02 2.58 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.13 2.75 7.65 -2.91 -0.02 2.73 16 Total: -1.00 -68.34 346.56 3.91 -64.43 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.39 Total: 29.69 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 4.17 Total: -34.30 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -1.24 Total: -76.30 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.77 Total: 42.45 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.13 Total: -7.14 kcal Total: -68.34 3.91 -64.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066801855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.965 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds