Wall clock time and date at job start Tue Mar 31 2020 15:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46910 * 2 1 4 4 N 1.46498 * 109.46903 * 119.99564 * 2 1 3 5 5 C 1.34774 * 120.00348 * 275.00387 * 4 2 1 6 6 O 1.21549 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.47867 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.39669 * 120.09925 * 0.02562 * 7 5 4 9 9 C 1.38043 * 120.03800 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.24168 * 359.75416 * 9 8 7 11 11 C 1.39179 * 120.20357 * 0.50266 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.76778 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46950 * 90.00202 * 17 15 13 19 19 H 1.48495 * 109.46650 * 209.99961 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99842 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.49916 * 11 10 9 22 22 C 1.50703 * 109.47171 * 240.00074 * 2 1 3 23 23 C 1.38234 * 119.99550 * 279.72560 * 22 2 1 24 24 C 1.38235 * 119.99901 * 179.81147 * 23 22 2 25 25 C 1.38243 * 119.99647 * 0.39913 * 24 23 22 26 26 C 1.38233 * 120.00064 * 359.85309 * 25 24 23 27 27 C 1.38229 * 120.00149 * 99.99863 * 22 2 1 28 28 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47414 * 300.00093 * 1 2 3 30 30 H 1.09005 * 109.46881 * 60.00314 * 1 2 3 31 31 H 0.97008 * 119.99747 * 95.00187 * 4 2 1 32 32 H 1.08002 * 119.98588 * 359.96545 * 8 7 5 33 33 H 1.08000 * 119.87868 * 180.02562 * 9 8 7 34 34 H 1.08005 * 119.89464 * 180.25271 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12339 * 180.23002 * 21 11 10 37 37 H 1.08002 * 120.00552 * 359.97438 * 23 22 2 38 38 H 1.08000 * 120.00099 * 180.23045 * 24 23 22 39 39 H 1.07999 * 119.99893 * 179.83483 * 25 24 23 40 40 H 1.07995 * 119.99927 * 179.97438 * 26 25 24 41 41 H 1.07996 * 119.99870 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8583 1.1613 2.4116 7 6 2.6403 -0.7151 3.5644 8 6 2.9741 -2.0699 3.5038 9 6 3.4351 -2.7191 4.6314 10 6 3.5733 -2.0322 5.8224 11 6 3.2385 -0.6832 5.8955 12 16 3.4107 0.1865 7.4181 13 6 1.7717 0.0320 8.0458 14 1 1.0453 -0.5678 7.5176 15 6 1.4141 0.6809 9.2188 16 7 2.2993 1.4115 9.8629 17 14 -0.3235 0.5165 9.8847 18 1 -0.3941 -0.6499 10.8011 19 1 -0.6886 1.7507 10.6253 20 1 -1.2691 0.3180 8.7570 21 6 2.7739 -0.0218 4.7662 22 6 2.0324 -0.7104 -1.2305 23 6 2.0721 -2.0918 -1.2632 24 6 2.5292 -2.7436 -2.3933 25 6 2.9544 -2.0137 -3.4876 26 6 2.9196 -0.6322 -3.4529 27 6 2.4587 0.0194 -2.3243 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.2490 -1.6318 1.1527 32 1 2.8715 -2.6101 2.5742 33 1 3.6929 -3.7667 4.5816 34 1 3.9383 -2.5447 6.7002 35 1 2.0492 1.8654 10.6829 36 1 2.5169 1.0258 4.8189 37 1 1.7435 -2.6620 -0.4068 38 1 2.5567 -3.8229 -2.4202 39 1 3.3140 -2.5228 -4.3696 40 1 3.2521 -0.0621 -4.3077 41 1 2.4314 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079379993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:53 Heat of formation + Delta-G solvation = 6.781076 kcal Electronic energy + Delta-G solvation = -23571.303910 eV Core-core repulsion = 20120.683354 eV Total energy + Delta-G solvation = -3450.620556 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42775 -39.36651 -37.84781 -35.64032 -32.50635 -32.34895 -31.25892 -30.65650 -30.39103 -29.22253 -25.56775 -24.64235 -23.48008 -22.89818 -22.27053 -20.99822 -20.20197 -18.55353 -17.58940 -16.94402 -16.37380 -15.83707 -15.37285 -15.19752 -14.92528 -14.84945 -14.76827 -14.26674 -13.94451 -13.73322 -13.70790 -13.42983 -13.33748 -12.94897 -12.67443 -12.42056 -12.22344 -11.86919 -11.64864 -11.41539 -11.15608 -11.13164 -11.09624 -11.07811 -10.70478 -9.97888 -9.79701 -9.31718 -9.27638 -9.16140 -9.04826 -9.01375 -8.59207 -8.02948 -6.71097 -6.28319 -4.02242 0.95332 1.03543 1.16090 1.66402 3.02501 3.06515 3.20311 3.23257 3.28512 3.44207 3.49351 4.08645 4.24918 4.27304 4.50696 4.63496 4.76058 4.81773 5.02285 5.06526 5.07351 5.08897 5.16138 5.22654 5.23215 5.45520 5.47873 5.60725 5.62133 5.69678 5.76352 5.87106 5.98179 5.99782 6.09263 6.15052 6.15559 6.25058 6.43234 6.58313 6.61911 6.63242 6.92994 7.18718 7.46919 7.57839 8.27577 8.32977 9.17511 10.78414 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002484 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.852738 B =11271.211423 C =11784.488158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.098 0.902 4 N -0.727 5.727 5 C 0.566 3.434 6 O -0.533 6.533 7 C -0.154 4.154 8 C -0.090 4.090 9 C -0.141 4.141 10 C -0.055 4.055 11 C -0.106 4.106 12 S -0.035 6.035 13 C -0.519 4.519 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.870 5.870 17 Si 0.921 3.079 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.018 4.018 22 C -0.088 4.088 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.108 4.108 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.398 0.602 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.270 0.730 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -9.240 -24.752 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 H 0.116 0.884 4 N -0.381 5.381 5 C 0.354 3.646 6 O -0.410 6.410 7 C -0.159 4.159 8 C -0.109 4.109 9 C -0.160 4.160 10 C -0.076 4.076 11 C -0.217 4.217 12 S 0.200 5.800 13 C -0.667 4.667 14 H 0.094 0.906 15 C -0.136 4.136 16 N -0.505 5.505 17 Si 0.747 3.253 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.040 4.040 22 C -0.088 4.088 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.126 4.126 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.291 -7.693 -24.028 25.262 hybrid contribution -2.006 -1.263 -0.251 2.384 sum -0.716 -8.955 -24.279 25.888 Atomic orbital electron populations 1.22174 0.94059 1.02486 1.02963 1.19774 0.94318 0.96847 0.81223 0.88418 1.46062 1.68675 1.14080 1.09307 1.18413 0.76856 0.86426 0.82857 1.90769 1.49752 1.15578 1.84864 1.19850 1.07269 0.94657 0.94148 1.21119 0.98405 0.93240 0.98162 1.21053 1.02139 0.99824 0.93034 1.21961 0.94811 0.93445 0.97402 1.22854 1.00674 0.96953 1.01222 1.83608 1.17814 1.69116 1.09499 1.22832 0.96198 1.35954 1.11677 0.90625 1.25006 0.98566 0.94169 0.95856 1.69985 1.34134 1.29528 1.16887 0.86119 0.82399 0.77864 0.78939 1.20170 1.20642 1.19566 1.21951 0.91844 1.00366 0.89820 1.19977 0.99333 0.93982 0.95541 1.20945 1.00163 0.93791 0.98436 1.21147 0.98858 1.00003 0.93386 1.21193 0.99951 0.94261 0.98587 1.21160 0.99540 0.94674 0.98072 1.21041 0.98439 1.00111 0.93027 0.92293 0.91244 0.91496 0.76568 0.86680 0.85856 0.85056 0.92054 0.84287 0.86145 0.85871 0.86041 0.85858 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.46 37.16 0.35 -1.25 16 2 C 0.18 1.96 2.78 -69.08 -0.19 1.76 16 3 H 0.10 1.18 7.44 -51.93 -0.39 0.79 16 4 N -0.73 -8.62 4.98 -55.87 -0.28 -8.90 16 5 C 0.57 9.15 7.74 -12.32 -0.10 9.06 16 6 O -0.53 -10.46 16.00 5.32 0.09 -10.37 16 7 C -0.15 -2.61 5.87 -105.00 -0.62 -3.23 16 8 C -0.09 -1.24 9.54 -39.12 -0.37 -1.61 16 9 C -0.14 -2.01 10.02 -39.68 -0.40 -2.41 16 10 C -0.06 -0.98 9.79 -39.25 -0.38 -1.37 16 11 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 12 S -0.03 -0.90 21.40 -107.50 -2.30 -3.21 16 13 C -0.52 -14.69 9.46 30.92 0.29 -14.39 16 14 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 15 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 16 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 17 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 C -0.02 -0.37 9.34 -38.92 -0.36 -0.73 16 22 C -0.09 -0.80 4.96 -104.62 -0.52 -1.31 16 23 C -0.12 -0.92 9.06 -39.58 -0.36 -1.28 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.11 -0.90 9.67 -39.59 -0.38 -1.28 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.40 3.75 4.88 -40.82 -0.20 3.55 16 32 H 0.12 1.12 6.40 -52.49 -0.34 0.78 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 37 H 0.12 0.80 6.90 -52.49 -0.36 0.44 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.90 8.04 -52.49 -0.42 0.48 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -32.99 367.37 -10.82 -43.81 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.03 Total: 3.72 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -4.54 Total: -22.30 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.46 Total: -33.68 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.99 -10.82 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079379993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.588 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds