Wall clock time and date at job start Tue Mar 31 2020 15:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46910 * 2 1 4 4 N 1.46498 * 109.46903 * 119.99564 * 2 1 3 5 5 C 1.34774 * 120.00348 * 275.00387 * 4 2 1 6 6 O 1.21549 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.47867 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.39669 * 120.09925 * 0.02562 * 7 5 4 9 9 C 1.38043 * 120.03800 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.24168 * 359.75416 * 9 8 7 11 11 C 1.39179 * 120.20357 * 0.50266 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.76778 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46950 * 90.00202 * 17 15 13 19 19 H 1.48495 * 109.46650 * 209.99961 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99842 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.49916 * 11 10 9 22 22 C 1.50703 * 109.47171 * 240.00074 * 2 1 3 23 23 C 1.38234 * 119.99550 * 279.72560 * 22 2 1 24 24 C 1.38235 * 119.99901 * 179.81147 * 23 22 2 25 25 C 1.38243 * 119.99647 * 0.39913 * 24 23 22 26 26 C 1.38233 * 120.00064 * 359.85309 * 25 24 23 27 27 C 1.38229 * 120.00149 * 99.99863 * 22 2 1 28 28 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47414 * 300.00093 * 1 2 3 30 30 H 1.09005 * 109.46881 * 60.00314 * 1 2 3 31 31 H 0.97008 * 119.99747 * 95.00187 * 4 2 1 32 32 H 1.08002 * 119.98588 * 359.96545 * 8 7 5 33 33 H 1.08000 * 119.87868 * 180.02562 * 9 8 7 34 34 H 1.08005 * 119.89464 * 180.25271 * 10 9 8 35 35 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12339 * 180.23002 * 21 11 10 37 37 H 1.08002 * 120.00552 * 359.97438 * 23 22 2 38 38 H 1.08000 * 120.00099 * 180.23045 * 24 23 22 39 39 H 1.07999 * 119.99893 * 179.83483 * 25 24 23 40 40 H 1.07995 * 119.99927 * 179.97438 * 26 25 24 41 41 H 1.07996 * 119.99870 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8583 1.1613 2.4116 7 6 2.6403 -0.7151 3.5644 8 6 2.9741 -2.0699 3.5038 9 6 3.4351 -2.7191 4.6314 10 6 3.5733 -2.0322 5.8224 11 6 3.2385 -0.6832 5.8955 12 16 3.4107 0.1865 7.4181 13 6 1.7717 0.0320 8.0458 14 1 1.0453 -0.5678 7.5176 15 6 1.4141 0.6809 9.2188 16 7 2.2993 1.4115 9.8629 17 14 -0.3235 0.5165 9.8847 18 1 -0.3941 -0.6499 10.8011 19 1 -0.6886 1.7507 10.6253 20 1 -1.2691 0.3180 8.7570 21 6 2.7739 -0.0218 4.7662 22 6 2.0324 -0.7104 -1.2305 23 6 2.0721 -2.0918 -1.2632 24 6 2.5292 -2.7436 -2.3933 25 6 2.9544 -2.0137 -3.4876 26 6 2.9196 -0.6322 -3.4529 27 6 2.4587 0.0194 -2.3243 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.2490 -1.6318 1.1527 32 1 2.8715 -2.6101 2.5742 33 1 3.6929 -3.7667 4.5816 34 1 3.9383 -2.5447 6.7002 35 1 2.0492 1.8654 10.6829 36 1 2.5169 1.0258 4.8189 37 1 1.7435 -2.6620 -0.4068 38 1 2.5567 -3.8229 -2.4202 39 1 3.3140 -2.5228 -4.3696 40 1 3.2521 -0.0621 -4.3077 41 1 2.4314 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079379993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:52 Heat of formation + Delta-G solvation = -11.947313 kcal Electronic energy + Delta-G solvation = -23572.116033 eV Core-core repulsion = 20120.683354 eV Total energy + Delta-G solvation = -3451.432680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50466 -40.21624 -39.12480 -36.64520 -34.66084 -33.43240 -31.99135 -31.83798 -31.49411 -30.03187 -27.75132 -25.68230 -24.41721 -23.67796 -23.49534 -21.90437 -21.32408 -20.07229 -19.19370 -17.82743 -17.48646 -16.94181 -16.86408 -16.58650 -16.21329 -16.03528 -15.75303 -15.46124 -15.16530 -14.79872 -14.67227 -14.55848 -14.24751 -14.15999 -13.81377 -13.38194 -13.27549 -13.12891 -13.06906 -12.97067 -12.67650 -12.58222 -12.40319 -11.97679 -11.79372 -11.74203 -11.26822 -11.14975 -10.77029 -10.37295 -9.93618 -9.82379 -9.72271 -9.66937 -8.81352 -8.39921 -6.19985 -0.19875 0.24552 0.37427 0.49644 1.28796 1.36865 1.45389 1.63814 1.77700 2.02753 2.23857 2.78805 2.88409 2.93082 3.41092 3.51326 3.65135 3.91907 3.93840 4.01604 4.12331 4.25282 4.27152 4.31018 4.35622 4.46675 4.60310 4.61928 4.65620 4.71410 4.88100 4.91891 5.03509 5.13684 5.17898 5.21042 5.28904 5.31708 5.37740 5.49786 5.56081 5.63584 5.66581 5.85324 6.09217 6.15081 6.41228 7.00378 7.09154 8.67189 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002484 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.852738 B =11271.211423 C =11784.488158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 H 0.076 0.924 4 N -0.703 5.703 5 C 0.564 3.436 6 O -0.579 6.579 7 C -0.157 4.157 8 C -0.064 4.064 9 C -0.119 4.119 10 C -0.062 4.062 11 C -0.128 4.128 12 S -0.096 6.096 13 C -0.535 4.535 14 H 0.067 0.933 15 C 0.019 3.981 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.269 1.269 21 C -0.045 4.045 22 C -0.100 4.100 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.413 0.587 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.136 0.864 35 H 0.274 0.726 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -13.113 -27.594 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 H 0.095 0.905 4 N -0.357 5.357 5 C 0.353 3.647 6 O -0.459 6.459 7 C -0.162 4.162 8 C -0.082 4.082 9 C -0.139 4.139 10 C -0.083 4.083 11 C -0.240 4.240 12 S 0.139 5.861 13 C -0.682 4.682 14 H 0.085 0.915 15 C -0.186 4.186 16 N -0.542 5.542 17 Si 0.814 3.186 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.194 1.194 21 C -0.067 4.067 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.253 0.747 32 H 0.189 0.811 33 H 0.195 0.805 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.732 -11.609 -26.907 29.314 hybrid contribution -1.755 -0.150 0.391 1.805 sum -1.023 -11.759 -26.516 29.024 Atomic orbital electron populations 1.22123 0.93579 1.03184 1.02295 1.19780 0.94674 0.96089 0.81483 0.90544 1.45879 1.66966 1.14577 1.08256 1.18394 0.76664 0.85913 0.83763 1.90754 1.51926 1.17654 1.85596 1.19950 1.07179 0.96180 0.92936 1.21694 0.94829 0.91440 1.00269 1.21556 0.99494 1.01832 0.90979 1.22086 0.94738 0.91876 0.99603 1.22498 1.04456 0.98441 0.98566 1.83489 1.17768 1.71307 1.13531 1.23053 0.96879 1.36112 1.12191 0.91472 1.26019 1.03073 0.93585 0.95966 1.70108 1.36314 1.30383 1.17428 0.85041 0.76713 0.78525 0.78306 1.18589 1.19723 1.19367 1.21622 0.94153 0.99232 0.91646 1.19816 1.00875 0.94644 0.94755 1.21149 1.00106 0.93196 0.99484 1.21464 0.98042 1.01272 0.92913 1.21549 0.99104 0.94178 0.99400 1.21419 0.99190 0.95321 0.98177 1.21198 0.98911 1.00474 0.93523 0.90817 0.93991 0.90102 0.74727 0.81142 0.80550 0.84603 0.91693 0.87995 0.84603 0.83592 0.83901 0.84222 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.46 71.98 0.68 -2.30 16 2 C 0.18 3.77 2.78 44.25 0.12 3.89 16 3 H 0.08 1.91 7.44 -2.39 -0.02 1.89 16 4 N -0.70 -15.32 4.98 -448.96 -2.23 -17.55 16 5 C 0.56 18.20 7.74 86.79 0.67 18.87 16 6 O -0.58 -23.99 16.00 -3.87 -0.06 -24.05 16 7 C -0.16 -5.21 5.87 -20.11 -0.12 -5.33 16 8 C -0.06 -1.47 9.54 22.57 0.22 -1.26 16 9 C -0.12 -2.87 10.02 22.21 0.22 -2.64 16 10 C -0.06 -2.15 9.79 22.48 0.22 -1.93 16 11 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 12 S -0.10 -5.29 21.40 -56.49 -1.21 -6.50 16 13 C -0.54 -31.70 9.46 67.94 0.64 -31.06 16 14 H 0.07 3.94 7.79 -2.91 -0.02 3.91 16 15 C 0.02 1.09 5.49 84.84 0.47 1.55 16 16 N -0.91 -55.12 13.22 21.64 0.29 -54.83 16 17 Si 0.99 45.02 29.55 68.60 2.03 47.05 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.04 -1.93 9.34 22.70 0.21 -1.71 16 22 C -0.10 -1.61 4.96 -19.87 -0.10 -1.71 16 23 C -0.12 -1.51 9.06 22.27 0.20 -1.30 16 24 C -0.12 -1.23 10.05 22.27 0.22 -1.00 16 25 C -0.12 -1.29 10.05 22.27 0.22 -1.07 16 26 C -0.12 -1.50 10.05 22.27 0.22 -1.27 16 27 C -0.12 -1.87 9.67 22.27 0.22 -1.65 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.41 6.09 4.88 -92.70 -0.45 5.63 16 32 H 0.17 2.09 6.40 -2.91 -0.02 2.07 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.10 5.03 7.65 -2.91 -0.02 5.01 16 37 H 0.14 1.17 6.90 -2.91 -0.02 1.15 16 38 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 39 H 0.14 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.13 1.77 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -78.90 367.37 3.85 -75.05 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.60 Total: 16.37 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 4.45 Total: -35.53 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.95 Total: -72.38 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.21 Total: -6.50 kcal Total: -78.90 3.85 -75.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079379993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.099 kcal (2) G-P(sol) polarization free energy of solvation -78.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds