Wall clock time and date at job start Tue Mar 31 2020 15:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00249 * 2 1 4 4 C 1.50703 * 109.47062 * 269.99845 * 3 2 1 5 5 C 1.38236 * 119.99786 * 89.99715 * 4 3 2 6 6 C 1.38234 * 119.99580 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00357 * 0.07182 * 6 5 4 8 8 C 1.38236 * 120.00049 * 359.90903 * 7 6 5 9 9 C 1.38231 * 120.00150 * 269.97789 * 4 3 2 10 10 C 1.34778 * 120.00123 * 179.97438 * 2 1 3 11 11 O 1.21555 * 120.00194 * 175.51423 * 10 2 1 12 12 C 1.47859 * 120.00059 * 355.50676 * 10 2 1 13 13 C 1.39674 * 120.10333 * 221.19567 * 12 10 2 14 14 C 1.38045 * 120.03274 * 179.74813 * 13 12 10 15 15 C 1.38173 * 120.24873 * 0.55273 * 14 13 12 16 16 C 1.39187 * 120.19901 * 359.69774 * 15 14 13 17 17 S 1.76200 * 120.01601 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00279 * 265.12726 * 17 16 15 19 19 H 1.07997 * 119.99774 * 5.01997 * 18 17 16 20 20 C 1.38729 * 120.00047 * 185.02596 * 18 17 16 21 21 N 1.31624 * 120.00202 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46970 * 59.99739 * 22 20 18 24 24 H 1.48499 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47063 * 299.99969 * 22 20 18 26 26 C 1.38875 * 119.95983 * 0.02796 * 16 15 14 27 27 H 1.08999 * 109.46609 * 95.16218 * 1 2 3 28 28 H 1.08997 * 109.46929 * 215.16441 * 1 2 3 29 29 H 1.09000 * 109.46790 * 335.16828 * 1 2 3 30 30 H 1.08994 * 109.47426 * 149.99521 * 3 2 1 31 31 H 1.08999 * 109.46709 * 29.99413 * 3 2 1 32 32 H 1.07998 * 119.99884 * 359.70161 * 5 4 3 33 33 H 1.08005 * 120.00106 * 179.97438 * 6 5 4 34 34 H 1.08006 * 120.00269 * 179.97438 * 7 6 5 35 35 H 1.07999 * 119.99892 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.99537 * 359.97438 * 9 4 3 37 37 H 1.07994 * 119.98177 * 0.02562 * 13 12 10 38 38 H 1.08000 * 119.87255 * 180.25409 * 14 13 12 39 39 H 1.08004 * 119.90071 * 179.72692 * 15 14 13 40 40 H 0.96990 * 120.00357 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.11941 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 1.5272 2.5018 -2.0725 6 6 1.7579 2.9012 -3.3756 7 6 2.9094 2.5014 -4.0276 8 6 3.8312 1.7037 -3.3758 9 6 3.6009 1.3050 -2.0723 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1689 -0.0818 12 6 1.4030 -2.4457 0.1014 13 6 1.8946 -3.4752 0.9072 14 6 1.2037 -4.6664 1.0044 15 6 0.0307 -4.8504 0.2977 16 6 -0.4655 -3.8331 -0.5123 17 16 -1.9614 -4.0731 -1.4119 18 6 -1.3063 -4.6019 -2.9597 19 1 -0.2439 -4.7621 -3.0700 20 6 -2.1550 -4.8123 -4.0367 21 7 -3.4498 -4.6173 -3.9023 22 14 -1.4603 -5.3722 -5.6779 23 1 -0.7706 -6.6758 -5.5046 24 1 -2.5659 -5.5240 -6.6575 25 1 -0.4921 -4.3624 -6.1760 26 6 0.2197 -2.6292 -0.6119 27 1 -0.3632 -0.0925 -1.0235 28 1 -0.3633 -0.8401 0.5918 29 1 -0.3633 0.9327 0.4316 30 1 3.1499 1.1385 0.5139 31 1 1.6084 2.0284 0.5137 32 1 0.6249 2.8096 -1.5650 33 1 1.0377 3.5245 -3.8850 34 1 3.0895 2.8132 -5.0458 35 1 4.7310 1.3916 -3.8850 36 1 4.3212 0.6821 -1.5628 37 1 2.8133 -3.3377 1.4580 38 1 1.5840 -5.4592 1.6314 39 1 -0.5030 -5.7862 0.3745 40 1 -4.0431 -4.7641 -4.6553 41 1 -0.1632 -1.8380 -1.2393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079380025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:15 Heat of formation + Delta-G solvation = 19.991743 kcal Electronic energy + Delta-G solvation = -24352.008805 eV Core-core repulsion = 20901.961107 eV Total energy + Delta-G solvation = -3450.047699 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35482 -39.08162 -37.76928 -35.65109 -32.54492 -32.34084 -30.92315 -30.53943 -30.50819 -27.33964 -26.13939 -25.59980 -23.07546 -22.60187 -22.27590 -21.38919 -19.62705 -17.87766 -17.10611 -16.95194 -16.42096 -16.01718 -15.64018 -15.07857 -14.95547 -14.87907 -14.67975 -14.22785 -13.71665 -13.45936 -13.42690 -13.10062 -13.01570 -12.78444 -12.57162 -12.43536 -12.31972 -11.85555 -11.58211 -11.32598 -11.18865 -11.10743 -11.06363 -11.00652 -10.71163 -9.99660 -9.84240 -9.18370 -9.00586 -8.94522 -8.87729 -8.68894 -8.54378 -8.03351 -6.76110 -6.32450 -4.06698 1.19495 1.33280 1.38341 1.66313 2.90296 3.04138 3.16595 3.20209 3.23676 3.42049 3.82804 4.04336 4.20632 4.54525 4.71654 4.82573 4.96212 5.04028 5.07411 5.10059 5.16696 5.22469 5.36018 5.40953 5.43438 5.49608 5.59349 5.60862 5.73252 5.78369 5.87852 5.93195 6.01610 6.04047 6.21581 6.40556 6.43745 6.48329 6.56312 6.60109 6.69920 6.89935 6.96187 7.19501 7.34247 7.54373 8.21526 8.29429 9.13860 10.74060 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004142 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.319167 B = 6757.713036 C = 8425.857631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.157 3.843 4 C -0.109 4.109 5 C -0.105 4.105 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.125 4.125 9 C -0.094 4.094 10 C 0.569 3.431 11 O -0.539 6.539 12 C -0.149 4.149 13 C -0.069 4.069 14 C -0.140 4.140 15 C -0.059 4.059 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.871 5.871 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.053 4.053 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.270 0.730 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 12.744 7.377 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.035 3.965 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.143 4.143 7 C -0.136 4.136 8 C -0.143 4.143 9 C -0.112 4.112 10 C 0.359 3.641 11 O -0.417 6.417 12 C -0.154 4.154 13 C -0.088 4.088 14 C -0.159 4.159 15 C -0.080 4.080 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.506 5.506 22 Si 0.744 3.256 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.074 4.074 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.080 0.920 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.254 12.878 7.551 17.058 hybrid contribution 1.576 -0.521 -1.611 2.314 sum 9.830 12.356 5.940 16.870 Atomic orbital electron populations 1.22186 0.78759 1.03427 1.02750 1.47776 1.07309 1.05202 1.73775 1.20367 0.98351 0.84880 0.92878 1.20231 0.95226 0.98432 0.97111 1.21037 0.98479 0.97849 0.95015 1.21116 0.97569 1.00654 0.94960 1.21176 0.94548 0.98153 0.99708 1.21182 0.99631 0.98411 0.95051 1.21237 0.97221 0.98009 0.94763 1.18498 0.86868 0.83570 0.75155 1.90712 1.13801 1.87334 1.49829 1.19794 0.97433 0.94636 1.03498 1.21042 0.98487 0.92210 0.97049 1.21091 0.96282 0.97260 1.01294 1.21929 0.94250 0.98254 0.93567 1.22783 1.03238 0.94770 1.00911 1.83542 1.00075 1.87090 1.09412 1.22801 0.96304 1.52264 0.95454 0.90717 1.24974 0.94704 0.94846 0.98864 1.69966 1.02447 1.46006 1.32177 0.86214 0.78586 0.79441 0.81345 1.19753 1.20691 1.19835 1.22165 0.91840 0.97586 0.95829 0.91663 0.89930 0.91033 0.89130 0.89584 0.86159 0.86112 0.86267 0.86191 0.85401 0.85947 0.85821 0.85168 0.92002 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.96 59.85 0.54 1.37 16 2 N -0.61 -8.12 2.86 -184.07 -0.53 -8.65 16 3 C 0.16 1.78 5.54 -5.19 -0.03 1.75 16 4 C -0.11 -1.34 5.46 -104.62 -0.57 -1.91 16 5 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 6 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 7 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 8 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 9 C -0.09 -1.25 9.59 -39.59 -0.38 -1.63 16 10 C 0.57 9.37 7.32 -12.32 -0.09 9.28 16 11 O -0.54 -9.96 15.80 5.32 0.08 -9.88 16 12 C -0.15 -2.55 5.15 -105.00 -0.54 -3.09 16 13 C -0.07 -1.09 9.65 -39.12 -0.38 -1.46 16 14 C -0.14 -2.14 10.02 -39.68 -0.40 -2.54 16 15 C -0.06 -1.06 9.79 -39.25 -0.38 -1.45 16 16 C -0.11 -2.18 5.45 -38.99 -0.21 -2.40 16 17 S -0.04 -0.88 21.41 -107.50 -2.30 -3.18 16 18 C -0.52 -14.42 9.46 30.91 0.29 -14.13 16 19 H 0.07 2.08 7.79 -52.49 -0.41 1.67 16 20 C 0.08 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -24.87 13.22 55.49 0.73 -24.14 16 22 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.05 -0.99 7.37 -38.92 -0.29 -1.27 16 27 H 0.06 0.83 6.86 -51.93 -0.36 0.47 16 28 H 0.08 1.03 5.99 -51.93 -0.31 0.72 16 29 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 30 H 0.09 1.06 7.43 -51.93 -0.39 0.68 16 31 H 0.09 0.72 7.80 -51.93 -0.41 0.31 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.79 7.40 -52.48 -0.39 1.40 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 41 H 0.14 2.50 5.52 -52.49 -0.29 2.21 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -31.95 364.60 -10.70 -42.65 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.05 Total: 3.92 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -4.11 Total: -22.46 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.21 Total: -32.78 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.95 -10.70 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079380025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.639 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds