Wall clock time and date at job start Tue Mar 31 2020 15:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00249 * 2 1 4 4 C 1.50703 * 109.47062 * 269.99845 * 3 2 1 5 5 C 1.38236 * 119.99786 * 89.99715 * 4 3 2 6 6 C 1.38234 * 119.99580 * 179.97438 * 5 4 3 7 7 C 1.38232 * 120.00357 * 0.07182 * 6 5 4 8 8 C 1.38236 * 120.00049 * 359.90903 * 7 6 5 9 9 C 1.38231 * 120.00150 * 269.97789 * 4 3 2 10 10 C 1.34778 * 120.00123 * 179.97438 * 2 1 3 11 11 O 1.21555 * 120.00194 * 175.51423 * 10 2 1 12 12 C 1.47859 * 120.00059 * 355.50676 * 10 2 1 13 13 C 1.39674 * 120.10333 * 221.19567 * 12 10 2 14 14 C 1.38045 * 120.03274 * 179.74813 * 13 12 10 15 15 C 1.38173 * 120.24873 * 0.55273 * 14 13 12 16 16 C 1.39187 * 120.19901 * 359.69774 * 15 14 13 17 17 S 1.76200 * 120.01601 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00279 * 265.12726 * 17 16 15 19 19 H 1.07997 * 119.99774 * 5.01997 * 18 17 16 20 20 C 1.38729 * 120.00047 * 185.02596 * 18 17 16 21 21 N 1.31624 * 120.00202 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46970 * 59.99739 * 22 20 18 24 24 H 1.48499 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47063 * 299.99969 * 22 20 18 26 26 C 1.38875 * 119.95983 * 0.02796 * 16 15 14 27 27 H 1.08999 * 109.46609 * 95.16218 * 1 2 3 28 28 H 1.08997 * 109.46929 * 215.16441 * 1 2 3 29 29 H 1.09000 * 109.46790 * 335.16828 * 1 2 3 30 30 H 1.08994 * 109.47426 * 149.99521 * 3 2 1 31 31 H 1.08999 * 109.46709 * 29.99413 * 3 2 1 32 32 H 1.07998 * 119.99884 * 359.70161 * 5 4 3 33 33 H 1.08005 * 120.00106 * 179.97438 * 6 5 4 34 34 H 1.08006 * 120.00269 * 179.97438 * 7 6 5 35 35 H 1.07999 * 119.99892 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.99537 * 359.97438 * 9 4 3 37 37 H 1.07994 * 119.98177 * 0.02562 * 13 12 10 38 38 H 1.08000 * 119.87255 * 180.25409 * 14 13 12 39 39 H 1.08004 * 119.90071 * 179.72692 * 15 14 13 40 40 H 0.96990 * 120.00357 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.11941 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 1.5272 2.5018 -2.0725 6 6 1.7579 2.9012 -3.3756 7 6 2.9094 2.5014 -4.0276 8 6 3.8312 1.7037 -3.3758 9 6 3.6009 1.3050 -2.0723 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1689 -0.0818 12 6 1.4030 -2.4457 0.1014 13 6 1.8946 -3.4752 0.9072 14 6 1.2037 -4.6664 1.0044 15 6 0.0307 -4.8504 0.2977 16 6 -0.4655 -3.8331 -0.5123 17 16 -1.9614 -4.0731 -1.4119 18 6 -1.3063 -4.6019 -2.9597 19 1 -0.2439 -4.7621 -3.0700 20 6 -2.1550 -4.8123 -4.0367 21 7 -3.4498 -4.6173 -3.9023 22 14 -1.4603 -5.3722 -5.6779 23 1 -0.7706 -6.6758 -5.5046 24 1 -2.5659 -5.5240 -6.6575 25 1 -0.4921 -4.3624 -6.1760 26 6 0.2197 -2.6292 -0.6119 27 1 -0.3632 -0.0925 -1.0235 28 1 -0.3633 -0.8401 0.5918 29 1 -0.3633 0.9327 0.4316 30 1 3.1499 1.1385 0.5139 31 1 1.6084 2.0284 0.5137 32 1 0.6249 2.8096 -1.5650 33 1 1.0377 3.5245 -3.8850 34 1 3.0895 2.8132 -5.0458 35 1 4.7310 1.3916 -3.8850 36 1 4.3212 0.6821 -1.5628 37 1 2.8133 -3.3377 1.4580 38 1 1.5840 -5.4592 1.6314 39 1 -0.5030 -5.7862 0.3745 40 1 -4.0431 -4.7641 -4.6553 41 1 -0.1632 -1.8380 -1.2393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079380025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:14 Heat of formation + Delta-G solvation = 4.198700 kcal Electronic energy + Delta-G solvation = -24352.693643 eV Core-core repulsion = 20901.961107 eV Total energy + Delta-G solvation = -3450.732536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54241 -40.07542 -39.06453 -36.78646 -34.64322 -33.38663 -31.92948 -31.80127 -31.72700 -28.30784 -27.71887 -27.21964 -24.30781 -23.71497 -23.43293 -22.39516 -20.87544 -19.72996 -18.41727 -17.97392 -17.59567 -17.24288 -16.92022 -16.68894 -16.38322 -16.04243 -15.86091 -15.41347 -15.09705 -14.69313 -14.68408 -14.31260 -14.16085 -13.91155 -13.76061 -13.48394 -13.36146 -13.21623 -13.10970 -12.98128 -12.79260 -12.61018 -12.36502 -12.10999 -11.87578 -11.73771 -11.26445 -11.14277 -10.68788 -9.95208 -9.85628 -9.84085 -9.73730 -9.61562 -8.76992 -8.38744 -6.17011 -0.09055 0.24949 0.34227 0.48074 1.30393 1.36918 1.43544 1.61275 1.68530 1.97856 2.24268 2.70355 2.91647 2.94346 3.39084 3.44901 3.83239 3.86900 3.94142 4.07934 4.13216 4.22696 4.26523 4.28350 4.36895 4.47388 4.54298 4.55996 4.66751 4.70222 4.73595 4.87102 4.93410 5.07527 5.13219 5.21990 5.34558 5.39528 5.43828 5.48215 5.53229 5.59222 5.64945 5.84745 6.09175 6.16508 6.19248 6.98942 7.02757 8.67489 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004142 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.319167 B = 6757.713036 C = 8425.857631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.600 5.600 3 C 0.156 3.844 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.117 4.117 10 C 0.564 3.436 11 O -0.566 6.566 12 C -0.152 4.152 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.067 4.067 16 C -0.128 4.128 17 S -0.074 6.074 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.028 3.972 21 N -0.902 5.902 22 Si 0.981 3.019 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.055 4.055 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.134 0.866 40 H 0.274 0.726 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.609 13.550 7.733 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C 0.035 3.965 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.157 4.157 9 C -0.136 4.136 10 C 0.353 3.647 11 O -0.446 6.446 12 C -0.157 4.157 13 C -0.082 4.082 14 C -0.142 4.142 15 C -0.088 4.088 16 C -0.239 4.239 17 S 0.161 5.839 18 C -0.688 4.688 19 H 0.080 0.920 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.804 3.196 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.076 4.076 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.876 13.706 7.920 18.148 hybrid contribution 1.447 -0.709 -1.624 2.288 sum 10.322 12.998 6.295 17.752 Atomic orbital electron populations 1.22270 0.77651 1.05150 1.02157 1.47840 1.08011 1.05104 1.72073 1.20572 0.98587 0.84577 0.92793 1.20370 0.95236 0.98907 0.97607 1.21354 0.98912 0.97168 0.95276 1.21501 0.97825 1.00501 0.95100 1.21497 0.94422 0.97662 1.00727 1.21402 1.00531 0.98865 0.94917 1.21285 0.97855 0.98888 0.95581 1.18482 0.86571 0.84250 0.75387 1.90701 1.14709 1.87749 1.51433 1.19954 0.96747 0.95709 1.03310 1.21419 0.98918 0.91776 0.96091 1.21427 0.94533 0.97982 1.00275 1.22033 0.95368 0.97806 0.93580 1.22535 1.02391 0.96652 1.02299 1.83374 1.04025 1.87297 1.09218 1.23028 0.95867 1.52695 0.97165 0.91974 1.25834 0.94962 0.94737 1.02286 1.70064 1.03561 1.46830 1.33324 0.85252 0.78175 0.79029 0.77169 1.19108 1.19391 1.19658 1.22000 0.92444 0.96882 0.96260 0.92918 0.90895 0.87132 0.89913 0.85912 0.83721 0.83802 0.84208 0.85259 0.87116 0.83724 0.81730 0.84776 0.91657 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 8.96 127.77 1.15 2.68 16 2 N -0.60 -15.32 2.86 -854.55 -2.44 -17.76 16 3 C 0.16 3.28 5.54 85.63 0.47 3.75 16 4 C -0.12 -2.84 5.46 -19.87 -0.11 -2.95 16 5 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 6 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 7 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 8 C -0.14 -3.36 10.05 22.27 0.22 -3.14 16 9 C -0.12 -3.16 9.59 22.27 0.21 -2.95 16 10 C 0.56 18.26 7.32 86.79 0.64 18.89 16 11 O -0.57 -20.85 15.80 -3.89 -0.06 -20.91 16 12 C -0.15 -5.10 5.15 -20.11 -0.10 -5.21 16 13 C -0.06 -1.86 9.65 22.57 0.22 -1.65 16 14 C -0.12 -3.45 10.02 22.21 0.22 -3.23 16 15 C -0.07 -2.36 9.79 22.48 0.22 -2.14 16 16 C -0.13 -5.31 5.45 22.65 0.12 -5.19 16 17 S -0.07 -3.76 21.41 -56.49 -1.21 -4.97 16 18 C -0.54 -30.65 9.46 67.94 0.64 -30.00 16 19 H 0.06 3.56 7.79 -2.91 -0.02 3.53 16 20 C 0.03 1.54 5.49 84.84 0.47 2.01 16 21 N -0.90 -52.25 13.22 21.64 0.29 -51.97 16 22 Si 0.98 43.74 29.55 68.60 2.03 45.77 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C -0.05 -2.06 7.37 22.70 0.17 -1.89 16 27 H 0.05 1.31 6.86 -2.39 -0.02 1.30 16 28 H 0.07 1.77 5.99 -2.39 -0.01 1.75 16 29 H 0.11 1.55 7.83 -2.39 -0.02 1.53 16 30 H 0.08 1.89 7.43 -2.39 -0.02 1.87 16 31 H 0.12 1.65 7.80 -2.39 -0.02 1.63 16 32 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.11 3.27 7.40 -2.91 -0.02 3.25 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.27 14.80 8.31 -92.72 -0.77 14.03 16 41 H 0.13 4.91 5.52 -2.91 -0.02 4.89 16 Total: -1.00 -70.81 364.60 4.84 -65.97 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.04 Total: 21.69 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 5.20 Total: -37.82 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -2.16 Total: -69.73 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.21 Total: -4.97 kcal Total: -70.81 4.84 -65.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079380025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.169 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds