Wall clock time and date at job start Tue Mar 31 2020 15:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00074 * 2 1 4 4 C 1.53005 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46992 * 65.00470 * 4 3 2 6 6 C 1.46504 * 119.99515 * 269.99752 * 5 4 3 7 7 C 1.50696 * 109.47143 * 270.00035 * 6 5 4 8 8 H 1.08001 * 119.99618 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99958 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99925 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00231 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47436 * 89.99841 * 11 9 7 13 13 H 1.48497 * 109.47407 * 210.00358 * 11 9 7 14 14 H 1.48508 * 109.47029 * 330.00191 * 11 9 7 15 15 C 1.34767 * 120.00210 * 89.99403 * 5 4 3 16 16 O 1.21278 * 120.00400 * 179.97438 * 15 5 4 17 17 C 1.50703 * 120.00246 * 0.02562 * 15 5 4 18 18 S 1.81398 * 109.47369 * 179.97438 * 17 15 5 19 19 C 1.76207 * 102.99973 * 180.02562 * 18 17 15 20 20 C 1.38937 * 120.05372 * 0.27382 * 19 18 17 21 21 C 1.38096 * 119.94358 * 180.21462 * 20 19 18 22 22 C 1.38485 * 120.05364 * 359.51114 * 21 20 19 23 23 F 1.35096 * 119.94411 * 180.27941 * 22 21 20 24 24 C 1.38481 * 120.10818 * 0.25806 * 22 21 20 25 25 C 1.38099 * 120.05711 * 359.97438 * 24 22 21 26 26 H 1.08995 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46823 * 300.00357 * 1 2 3 28 28 H 1.09003 * 109.46496 * 60.00246 * 1 2 3 29 29 H 1.09006 * 109.47126 * 59.99835 * 3 2 1 30 30 H 1.08996 * 109.47348 * 299.99552 * 3 2 1 31 31 H 1.08999 * 109.47062 * 305.00343 * 4 3 2 32 32 H 1.08998 * 109.46919 * 185.00164 * 4 3 2 33 33 H 1.09003 * 109.47378 * 30.00377 * 6 5 4 34 34 H 1.09006 * 109.46909 * 149.99699 * 6 5 4 35 35 H 0.97001 * 120.00363 * 179.97438 * 10 9 7 36 36 H 1.09008 * 109.47034 * 59.99635 * 17 15 5 37 37 H 1.09000 * 109.46975 * 300.00203 * 17 15 5 38 38 H 1.07998 * 120.02672 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.97635 * 179.79606 * 21 20 19 40 40 H 1.08005 * 119.96937 * 179.97438 * 24 22 21 41 41 H 1.07997 * 120.02561 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.1063 -0.8926 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2203 -0.5462 -0.6506 9 6 5.8613 -2.6292 -0.9483 10 7 7.0792 -2.9832 -0.6005 11 14 4.6186 -3.9299 -1.4518 12 1 4.7041 -4.1554 -2.9171 13 1 4.9126 -5.1982 -0.7377 14 1 3.2508 -3.4698 -1.1009 15 6 4.2633 1.3329 -2.3200 16 8 4.6290 0.8192 -3.3560 17 6 4.1305 2.8312 -2.2279 18 16 4.5849 3.5774 -3.8176 19 6 4.3724 5.3014 -3.5214 20 6 3.9513 5.7464 -2.2744 21 6 3.7812 7.0977 -2.0461 22 6 4.0398 8.0096 -3.0557 23 9 3.8781 9.3314 -2.8282 24 6 4.4642 7.5688 -4.2980 25 6 4.6312 6.2182 -4.5328 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8901 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5684 0.8427 32 1 3.9785 2.1764 0.0902 33 1 3.3857 -1.3633 -0.6714 34 1 3.9138 -1.2123 -2.3646 35 1 7.3321 -3.9196 -0.6051 36 1 4.7926 3.2074 -1.4479 37 1 3.0998 3.0904 -1.9858 38 1 3.7534 5.0359 -1.4855 39 1 3.4507 7.4440 -1.0780 40 1 4.6648 8.2819 -5.0840 41 1 4.9626 5.8750 -5.5016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:20 Heat of formation + Delta-G solvation = -111.643727 kcal Electronic energy + Delta-G solvation = -24933.024644 eV Core-core repulsion = 21046.499578 eV Total energy + Delta-G solvation = -3886.525066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87602 -40.86857 -39.76265 -38.76592 -36.64197 -34.81103 -32.62571 -31.89302 -31.50344 -30.71319 -28.96530 -27.08956 -24.55652 -24.06173 -23.80329 -23.71128 -20.32098 -19.14097 -19.00216 -18.36653 -18.24390 -17.50559 -17.19234 -17.04731 -16.85332 -16.57952 -16.26743 -16.04372 -15.65915 -15.53938 -15.25415 -14.80982 -14.51670 -14.41831 -14.28046 -14.15518 -13.82190 -13.60477 -13.37815 -13.11426 -13.05429 -12.85143 -12.70560 -12.46333 -12.10619 -12.02071 -11.95673 -11.73009 -11.19533 -10.88784 -10.81035 -10.59323 -10.52211 -10.16558 -9.47412 -8.41694 -8.33129 -6.36856 -0.01716 0.20210 0.23709 1.32935 1.34245 1.35740 1.45915 1.62322 2.21132 2.31931 2.48232 2.94740 3.02739 3.27081 3.42465 3.71020 3.87194 3.88042 4.01421 4.15973 4.21134 4.30709 4.35053 4.41250 4.50742 4.56036 4.62946 4.68959 4.88234 4.88424 4.92511 4.95886 4.99097 5.09538 5.12558 5.18326 5.46794 5.57351 5.80552 6.22858 6.31859 6.61033 6.64455 7.18239 7.31529 8.83629 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.003043 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.472451 B = 9200.220397 C =10270.237805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.044 3.956 4 C 0.099 3.901 5 N -0.584 5.584 6 C 0.236 3.764 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.941 3.059 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.241 1.241 15 C 0.513 3.487 16 O -0.577 6.577 17 C -0.131 4.131 18 S -0.078 6.078 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.129 4.129 22 C 0.073 3.927 23 F -0.146 7.146 24 C -0.131 4.131 25 C -0.081 4.081 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.011 0.989 35 H 0.268 0.732 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 21.736 0.657 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.033 4.033 4 C -0.024 4.024 5 N -0.315 5.315 6 C 0.114 3.886 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.184 4.184 10 N -0.585 5.585 11 Si 0.764 3.236 12 H -0.203 1.203 13 H -0.200 1.200 14 H -0.165 1.165 15 C 0.300 3.700 16 O -0.457 6.457 17 C -0.281 4.281 18 S 0.166 5.834 19 C -0.225 4.225 20 C -0.134 4.134 21 C -0.149 4.149 22 C 0.051 3.949 23 F -0.125 7.125 24 C -0.152 4.152 25 C -0.105 4.105 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.637 20.463 -0.788 24.603 hybrid contribution -0.375 0.021 0.884 0.961 sum -14.012 20.484 0.097 24.818 Atomic orbital electron populations 1.22867 0.79906 1.03189 1.00905 1.87995 1.21192 1.28981 1.95574 1.23205 0.92809 0.85003 1.02278 1.22021 0.93608 1.00560 0.86164 1.47795 1.64308 1.07342 1.12007 1.19248 0.95155 0.77790 0.96424 1.21590 0.97473 0.92958 1.45181 0.94850 1.25756 0.97189 1.00938 0.94558 1.70038 1.20389 1.18075 1.49983 0.85804 0.80689 0.78513 0.78550 1.20287 1.19959 1.16454 1.20203 0.77477 0.88738 0.83560 1.90703 1.48179 1.75605 1.31254 1.23878 1.09230 0.94082 1.00958 1.86698 1.84265 0.95547 1.16865 1.22213 1.04656 0.97485 0.98182 1.21324 1.00069 0.96271 0.95780 1.21298 1.01323 0.92271 0.99992 1.17912 1.03686 0.77646 0.95665 1.91487 1.93471 1.32263 1.95237 1.21265 1.00966 0.96331 0.96623 1.20768 0.99326 0.91354 0.99031 0.89969 0.92049 0.93629 0.88643 0.92336 0.90123 0.85617 0.92934 0.97111 0.92329 0.84096 0.83358 0.82812 0.82126 0.82400 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.77 16 2 O -0.42 -11.62 9.53 -148.98 -1.42 -13.04 16 3 C 0.04 0.90 6.28 71.98 0.45 1.35 16 4 C 0.10 2.59 5.62 86.38 0.49 3.07 16 5 N -0.58 -22.56 2.42 -826.13 -2.00 -24.56 16 6 C 0.24 11.63 4.05 85.63 0.35 11.98 16 7 C -0.53 -31.47 9.94 25.60 0.25 -31.22 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.01 0.81 5.47 84.65 0.46 1.28 16 10 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 11 Si 0.94 45.65 27.47 68.60 1.88 47.53 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.24 -10.79 6.54 99.48 0.65 -10.14 16 15 C 0.51 19.62 7.69 87.66 0.67 20.29 16 16 O -0.58 -28.49 15.44 -3.02 -0.05 -28.54 16 17 C -0.13 -3.17 3.37 71.24 0.24 -2.93 16 18 S -0.08 -2.13 21.06 -56.49 -1.19 -3.32 16 19 C -0.11 -2.28 6.11 22.60 0.14 -2.14 16 20 C -0.11 -1.74 9.36 22.40 0.21 -1.53 16 21 C -0.13 -1.87 10.02 22.29 0.22 -1.64 16 22 C 0.07 1.23 7.30 22.39 0.16 1.39 16 23 F -0.15 -2.65 17.26 44.97 0.78 -1.87 16 24 C -0.13 -2.09 10.02 22.29 0.22 -1.87 16 25 C -0.08 -1.48 9.79 22.40 0.22 -1.26 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.06 1.04 7.30 -2.39 -0.02 1.02 16 31 H 0.08 2.42 8.07 -2.39 -0.02 2.41 16 32 H 0.13 2.14 6.44 -2.39 -0.02 2.13 16 33 H 0.05 2.51 6.17 -2.39 -0.01 2.50 16 34 H 0.01 0.58 6.85 -2.38 -0.02 0.56 16 35 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.14 2.65 7.00 -2.39 -0.02 2.64 16 37 H 0.15 2.41 6.88 -2.39 -0.02 2.39 16 38 H 0.15 1.66 5.88 -2.91 -0.02 1.64 16 39 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -82.19 361.61 4.64 -77.55 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.99 Total: 7.60 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.34 Total: -1.46 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.70 Total: -84.45 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.47 Total: -41.58 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -1.19 Total: -3.32 kcal Total: -82.19 4.64 -77.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.089 kcal (2) G-P(sol) polarization free energy of solvation -82.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds