Wall clock time and date at job start Tue Mar 31 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 116.99878 * 2 1 4 4 O 1.20827 * 119.99781 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00247 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47302 * 179.97438 * 5 3 2 7 7 C 1.37098 * 119.99823 * 270.00058 * 6 5 3 8 8 H 1.07999 * 119.99862 * 202.99338 * 7 6 5 9 9 C 1.38953 * 120.00195 * 22.99555 * 7 6 5 10 10 N 1.31405 * 119.99818 * 351.25677 * 9 7 6 11 11 Si 1.86795 * 119.99994 * 171.25581 * 9 7 6 12 12 H 1.48508 * 109.47185 * 60.00254 * 11 9 7 13 13 H 1.48503 * 109.47096 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47670 * 300.00145 * 11 9 7 15 15 C 1.34777 * 120.00350 * 89.99754 * 6 5 3 16 16 O 1.21293 * 119.99784 * 5.01710 * 15 6 5 17 17 C 1.50697 * 120.00249 * 185.01990 * 15 6 5 18 18 C 1.53002 * 109.46956 * 174.79971 * 17 15 6 19 19 C 1.50707 * 109.46962 * 180.02562 * 18 17 15 20 20 C 1.38257 * 119.99596 * 264.97628 * 19 18 17 21 21 C 1.38210 * 120.06705 * 180.02562 * 20 19 18 22 22 C 1.38258 * 120.07435 * 359.97438 * 21 20 19 23 23 C 1.38369 * 119.99698 * 359.97438 * 22 21 20 24 24 F 1.35098 * 120.03551 * 179.97438 * 23 22 21 25 25 C 1.38370 * 120.00259 * 84.99258 * 19 18 17 26 26 F 1.35094 * 120.03404 * 0.26084 * 25 19 18 27 27 H 1.09003 * 109.47330 * 300.00122 * 1 2 3 28 28 H 1.09000 * 109.46828 * 60.00262 * 1 2 3 29 29 H 1.09002 * 109.46639 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46790 * 59.99579 * 5 3 2 31 31 H 1.08999 * 109.46820 * 299.99881 * 5 3 2 32 32 H 0.96997 * 120.00138 * 185.01109 * 10 9 7 33 33 H 1.09002 * 109.47382 * 54.79485 * 17 15 6 34 34 H 1.08999 * 109.47141 * 294.80027 * 17 15 6 35 35 H 1.08993 * 109.47314 * 60.00165 * 18 17 15 36 36 H 1.08999 * 109.46782 * 299.99162 * 18 17 15 37 37 H 1.08004 * 119.96706 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.96368 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99824 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1765 3.3364 -1.1878 8 1 4.8148 4.2068 -1.2253 9 6 3.5526 2.8821 -2.3434 10 7 2.9177 1.7317 -2.3383 11 14 3.6166 3.9068 -3.9039 12 1 5.0315 4.0993 -4.3120 13 1 2.8806 3.2060 -4.9867 14 1 2.9893 5.2293 -3.6539 15 6 4.1722 3.3269 1.1667 16 8 4.0888 2.7234 2.2155 17 6 4.4887 4.8003 1.1683 18 6 4.5283 5.3118 2.6098 19 6 4.8442 6.7854 2.6114 20 6 6.1492 7.2123 2.7734 21 6 6.4405 8.5634 2.7757 22 6 5.4277 9.4908 2.6154 23 6 4.1208 9.0666 2.4519 24 9 3.1305 9.9721 2.2957 25 6 3.8283 7.7109 2.4511 26 9 2.5522 7.2946 2.2983 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7811 0.8908 32 1 2.5448 1.3799 -3.1617 33 1 3.7199 5.3377 0.6131 34 1 5.4581 4.9642 0.6978 35 1 5.2971 4.7744 3.1649 36 1 3.5588 5.1480 3.0802 37 1 6.9418 6.4894 2.8984 38 1 7.4604 8.8951 2.9028 39 1 5.6567 10.5462 2.6169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120506565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:50 Heat of formation + Delta-G solvation = -177.665022 kcal Electronic energy + Delta-G solvation = -28021.098871 eV Core-core repulsion = 23565.497732 eV Total energy + Delta-G solvation = -4455.601140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.38655 -48.44883 -39.51247 -39.10696 -38.24598 -35.53009 -34.58808 -33.67236 -31.57348 -30.33258 -29.86281 -28.28474 -26.33652 -25.10890 -23.90338 -22.83122 -21.47290 -20.12375 -19.22138 -17.83418 -17.25925 -17.11575 -16.87846 -16.53192 -16.20353 -16.10306 -15.45958 -15.17674 -14.88402 -14.86487 -14.58838 -14.40337 -14.24383 -14.14008 -13.45810 -13.15631 -12.73583 -12.57607 -12.54584 -12.26416 -12.14785 -11.83780 -11.60682 -11.39244 -11.27360 -11.20684 -11.08495 -10.75388 -10.56585 -10.49735 -10.45587 -9.80629 -9.53574 -9.01745 -8.94397 -8.76159 -8.57110 -7.97508 -6.46970 -4.10096 0.89577 0.93770 3.07492 3.17075 3.17559 3.30524 3.49484 3.73899 3.77613 3.99676 4.09230 4.36480 4.46279 4.64935 4.75009 4.99618 5.00379 5.01927 5.49489 5.60852 5.71182 5.71986 5.73781 5.79475 5.91181 5.96962 6.01592 6.06293 6.17535 6.22339 6.33157 6.54535 6.56066 6.60838 6.74795 6.90466 7.28523 7.49432 7.63237 8.21867 8.94843 9.14411 9.33056 9.72737 10.54505 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003767 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.015635 B = 7430.780227 C = 8103.924321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.490 3.510 4 O -0.514 6.514 5 C 0.154 3.846 6 N -0.433 5.433 7 C -0.327 4.327 8 H 0.102 0.898 9 C 0.043 3.957 10 N -0.884 5.884 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.472 3.528 16 O -0.604 6.604 17 C -0.112 4.112 18 C -0.067 4.067 19 C -0.077 4.077 20 C -0.099 4.099 21 C -0.101 4.101 22 C -0.138 4.138 23 C 0.065 3.935 24 F -0.132 7.132 25 C 0.071 3.929 26 F -0.122 7.122 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.274 0.726 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 7.720 5.638 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.332 3.668 4 O -0.400 6.400 5 C 0.028 3.972 6 N -0.151 5.151 7 C -0.454 4.454 8 H 0.120 0.880 9 C -0.160 4.160 10 N -0.524 5.524 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.262 3.738 16 O -0.490 6.490 17 C -0.151 4.151 18 C -0.104 4.104 19 C -0.078 4.078 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.156 4.156 23 C 0.045 3.955 24 F -0.111 7.111 25 C 0.050 3.950 26 F -0.101 7.101 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.104 7.650 5.973 10.966 hybrid contribution -0.899 0.716 -1.245 1.694 sum 4.205 8.366 4.728 10.489 Atomic orbital electron populations 1.22916 0.78967 1.01742 1.01484 1.86464 1.21423 1.35524 1.85642 1.23992 0.92384 0.80413 0.70018 1.90509 1.66720 1.36465 1.46306 1.20643 0.86902 0.85633 1.03993 1.43327 1.57973 1.08447 1.05374 1.19615 1.27738 1.13010 0.85029 0.88033 1.25290 0.94210 0.96269 1.00246 1.69588 1.36289 1.17807 1.28717 0.85920 0.78392 0.79873 0.80033 1.19798 1.20801 1.19701 1.20156 0.81537 0.88790 0.83336 1.90534 1.58151 1.68804 1.31532 1.21319 1.03448 0.94657 0.95722 1.20382 1.04238 0.87719 0.98090 1.20141 0.92291 0.96644 0.98713 1.21102 0.95396 0.96108 0.99107 1.21046 0.99260 0.92480 0.99122 1.21015 0.90200 1.01448 1.02983 1.17715 0.86426 0.84960 1.06428 1.91515 1.60405 1.65915 1.93235 1.17632 0.80461 0.90851 1.06021 1.91559 1.35051 1.90543 1.92898 0.93242 0.92809 0.89630 0.84435 0.90514 0.91489 0.89359 0.89862 0.89398 0.89967 0.84110 0.84403 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.23 10.57 -39.28 -0.41 -8.64 16 3 C 0.49 12.33 5.92 36.01 0.21 12.54 16 4 O -0.51 -14.44 15.94 -18.75 -0.30 -14.74 16 5 C 0.15 3.72 5.29 -5.20 -0.03 3.70 16 6 N -0.43 -10.77 2.11 -116.10 -0.25 -11.02 16 7 C -0.33 -8.06 9.00 -14.93 -0.13 -8.20 16 8 H 0.10 2.31 6.72 -52.49 -0.35 1.96 16 9 C 0.04 1.07 5.41 -17.47 -0.09 0.97 16 10 N -0.88 -22.57 8.21 55.50 0.46 -22.11 16 11 Si 0.93 19.64 29.56 -169.99 -5.03 14.62 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 C 0.47 11.20 7.62 -10.99 -0.08 11.12 16 16 O -0.60 -15.38 15.54 5.55 0.09 -15.29 16 17 C -0.11 -2.15 4.23 -27.88 -0.12 -2.27 16 18 C -0.07 -1.11 4.42 -27.88 -0.12 -1.23 16 19 C -0.08 -1.08 5.14 -104.56 -0.54 -1.62 16 20 C -0.10 -1.07 9.68 -39.58 -0.38 -1.46 16 21 C -0.10 -0.92 10.04 -39.58 -0.40 -1.31 16 22 C -0.14 -1.41 10.02 -39.53 -0.40 -1.80 16 23 C 0.06 0.88 7.31 -39.37 -0.29 0.59 16 24 F -0.13 -1.91 17.18 2.25 0.04 -1.87 16 25 C 0.07 1.08 7.25 -39.37 -0.29 0.80 16 26 F -0.12 -2.18 16.48 2.25 0.04 -2.15 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.14 3.34 6.28 -51.93 -0.33 3.01 16 31 H 0.08 1.76 7.36 -51.93 -0.38 1.38 16 32 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 33 H 0.09 1.82 8.03 -51.93 -0.42 1.40 16 34 H 0.08 1.43 7.74 -51.93 -0.40 1.02 16 35 H 0.09 1.37 7.95 -51.93 -0.41 0.95 16 36 H 0.08 1.51 7.78 -51.93 -0.40 1.11 16 37 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -31.48 347.58 -6.09 -37.57 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.37 Total: 4.73 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -1.59 Total: 13.67 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.21 Total: -33.13 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.63 Total: -38.68 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.48 -6.09 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120506565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.095 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds