Wall clock time and date at job start Tue Mar 31 2020 15:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 116.99878 * 2 1 4 4 O 1.20827 * 119.99781 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00247 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47302 * 179.97438 * 5 3 2 7 7 C 1.37098 * 119.99823 * 270.00058 * 6 5 3 8 8 H 1.07999 * 119.99862 * 202.99338 * 7 6 5 9 9 C 1.38953 * 120.00195 * 22.99555 * 7 6 5 10 10 N 1.31405 * 119.99818 * 351.25677 * 9 7 6 11 11 Si 1.86795 * 119.99994 * 171.25581 * 9 7 6 12 12 H 1.48508 * 109.47185 * 60.00254 * 11 9 7 13 13 H 1.48503 * 109.47096 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47670 * 300.00145 * 11 9 7 15 15 C 1.34777 * 120.00350 * 89.99754 * 6 5 3 16 16 O 1.21293 * 119.99784 * 5.01710 * 15 6 5 17 17 C 1.50697 * 120.00249 * 185.01990 * 15 6 5 18 18 C 1.53002 * 109.46956 * 174.79971 * 17 15 6 19 19 C 1.50707 * 109.46962 * 180.02562 * 18 17 15 20 20 C 1.38257 * 119.99596 * 264.97628 * 19 18 17 21 21 C 1.38210 * 120.06705 * 180.02562 * 20 19 18 22 22 C 1.38258 * 120.07435 * 359.97438 * 21 20 19 23 23 C 1.38369 * 119.99698 * 359.97438 * 22 21 20 24 24 F 1.35098 * 120.03551 * 179.97438 * 23 22 21 25 25 C 1.38370 * 120.00259 * 84.99258 * 19 18 17 26 26 F 1.35094 * 120.03404 * 0.26084 * 25 19 18 27 27 H 1.09003 * 109.47330 * 300.00122 * 1 2 3 28 28 H 1.09000 * 109.46828 * 60.00262 * 1 2 3 29 29 H 1.09002 * 109.46639 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46790 * 59.99579 * 5 3 2 31 31 H 1.08999 * 109.46820 * 299.99881 * 5 3 2 32 32 H 0.96997 * 120.00138 * 185.01109 * 10 9 7 33 33 H 1.09002 * 109.47382 * 54.79485 * 17 15 6 34 34 H 1.08999 * 109.47141 * 294.80027 * 17 15 6 35 35 H 1.08993 * 109.47314 * 60.00165 * 18 17 15 36 36 H 1.08999 * 109.46782 * 299.99162 * 18 17 15 37 37 H 1.08004 * 119.96706 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.96368 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99824 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1765 3.3364 -1.1878 8 1 4.8148 4.2068 -1.2253 9 6 3.5526 2.8821 -2.3434 10 7 2.9177 1.7317 -2.3383 11 14 3.6166 3.9068 -3.9039 12 1 5.0315 4.0993 -4.3120 13 1 2.8806 3.2060 -4.9867 14 1 2.9893 5.2293 -3.6539 15 6 4.1722 3.3269 1.1667 16 8 4.0888 2.7234 2.2155 17 6 4.4887 4.8003 1.1683 18 6 4.5283 5.3118 2.6098 19 6 4.8442 6.7854 2.6114 20 6 6.1492 7.2123 2.7734 21 6 6.4405 8.5634 2.7757 22 6 5.4277 9.4908 2.6154 23 6 4.1208 9.0666 2.4519 24 9 3.1305 9.9721 2.2957 25 6 3.8283 7.7109 2.4511 26 9 2.5522 7.2946 2.2983 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7811 0.8908 32 1 2.5448 1.3799 -3.1617 33 1 3.7199 5.3377 0.6131 34 1 5.4581 4.9642 0.6978 35 1 5.2971 4.7744 3.1649 36 1 3.5588 5.1480 3.0802 37 1 6.9418 6.4894 2.8984 38 1 7.4604 8.8951 2.9028 39 1 5.6567 10.5462 2.6169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120506565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:49 Heat of formation + Delta-G solvation = -194.588190 kcal Electronic energy + Delta-G solvation = -28021.832715 eV Core-core repulsion = 23565.497732 eV Total energy + Delta-G solvation = -4456.334983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.50379 -49.59661 -41.37143 -40.39609 -39.80412 -37.38815 -36.52532 -34.96584 -33.48168 -31.27428 -31.24971 -29.88775 -27.93472 -26.83214 -25.37260 -23.77217 -22.70526 -21.88597 -21.08799 -18.94678 -18.87833 -18.49994 -18.27557 -18.16125 -17.65976 -17.33806 -17.29490 -16.95101 -16.17911 -16.14636 -16.04522 -15.95014 -15.69719 -15.40418 -14.86969 -14.56322 -14.28499 -14.16285 -13.89945 -13.65852 -13.53890 -13.25010 -13.01932 -12.91678 -12.87127 -12.73572 -12.61250 -12.34668 -12.16477 -12.05781 -11.96078 -11.59924 -11.48981 -10.94303 -10.55574 -9.90764 -9.83399 -9.72660 -8.34915 -6.03015 -0.03966 0.01482 1.38153 1.44657 1.53018 1.67184 1.82334 2.19098 2.33278 2.41810 2.80254 2.91656 3.12437 3.36358 3.56384 3.79340 3.99597 4.15660 4.19509 4.26924 4.27762 4.33070 4.36204 4.38276 4.56189 4.68189 4.73882 4.78306 4.87377 4.98596 5.00961 5.05887 5.17731 5.25126 5.38485 5.39839 5.63123 5.74697 5.82219 6.31341 7.04342 7.20922 7.44817 7.84261 8.66304 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003767 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.015635 B = 7430.780227 C = 8103.924321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.552 6.552 5 C 0.151 3.849 6 N -0.445 5.445 7 C -0.342 4.342 8 H 0.118 0.882 9 C -0.001 4.001 10 N -0.906 5.906 11 Si 0.993 3.007 12 H -0.251 1.251 13 H -0.286 1.286 14 H -0.280 1.280 15 C 0.459 3.541 16 O -0.628 6.628 17 C -0.101 4.101 18 C -0.055 4.055 19 C -0.092 4.092 20 C -0.090 4.090 21 C -0.080 4.080 22 C -0.122 4.122 23 C 0.045 3.955 24 F -0.144 7.144 25 C 0.033 3.967 26 F -0.151 7.151 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.272 0.728 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.168 0.832 38 H 0.186 0.814 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 9.204 5.435 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.335 3.665 4 O -0.442 6.442 5 C 0.026 3.974 6 N -0.164 5.164 7 C -0.468 4.468 8 H 0.135 0.865 9 C -0.202 4.202 10 N -0.546 5.546 11 Si 0.817 3.183 12 H -0.175 1.175 13 H -0.212 1.212 14 H -0.206 1.206 15 C 0.250 3.750 16 O -0.516 6.516 17 C -0.141 4.141 18 C -0.093 4.093 19 C -0.093 4.093 20 C -0.108 4.108 21 C -0.098 4.098 22 C -0.140 4.140 23 C 0.025 3.975 24 F -0.123 7.123 25 C 0.013 3.987 26 F -0.130 7.130 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.185 0.815 38 H 0.203 0.797 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.682 9.114 5.775 13.245 hybrid contribution -1.699 0.211 -1.120 2.046 sum 5.983 9.325 4.655 12.017 Atomic orbital electron populations 1.23282 0.76425 1.04849 1.01016 1.86430 1.23886 1.33805 1.84961 1.24140 0.92761 0.80622 0.69002 1.90480 1.67588 1.37813 1.48278 1.20669 0.86725 0.86000 1.04009 1.43586 1.58045 1.08745 1.05988 1.20031 1.28231 1.13501 0.85064 0.86491 1.26125 0.93890 0.97089 1.03059 1.69686 1.36885 1.18931 1.29089 0.84972 0.79276 0.77624 0.76417 1.17504 1.21167 1.20560 1.20951 0.80830 0.90480 0.82701 1.90498 1.59119 1.69796 1.32222 1.21269 1.03929 0.91167 0.97701 1.20177 1.02998 0.90073 0.96054 1.19978 0.93688 0.94577 1.01070 1.21473 0.94174 0.97863 0.97284 1.21576 1.01021 0.91134 0.96037 1.21491 0.88556 1.03545 1.00447 1.18050 0.87640 0.84051 1.07767 1.91477 1.61281 1.66038 1.93510 1.18091 0.79735 0.92324 1.08532 1.91472 1.37055 1.90982 1.93492 0.93237 0.93813 0.84712 0.84675 0.89936 0.91776 0.91226 0.87229 0.88273 0.93129 0.81453 0.79685 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.37 -16.61 10.57 -51.48 -0.54 -17.15 16 3 C 0.49 25.34 5.92 71.24 0.42 25.76 16 4 O -0.55 -32.09 15.94 21.96 0.35 -31.74 16 5 C 0.15 7.53 5.29 85.63 0.45 7.98 16 6 N -0.45 -22.63 2.11 -639.62 -1.35 -23.98 16 7 C -0.34 -16.94 9.00 84.04 0.76 -16.18 16 8 H 0.12 5.26 6.72 -2.91 -0.02 5.24 16 9 C 0.00 -0.06 5.41 84.93 0.46 0.40 16 10 N -0.91 -46.85 8.21 21.66 0.18 -46.67 16 11 Si 0.99 40.01 29.56 68.60 2.03 42.03 16 12 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 13 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 15 C 0.46 22.31 7.62 87.66 0.67 22.98 16 16 O -0.63 -32.89 15.54 -3.07 -0.05 -32.94 16 17 C -0.10 -3.94 4.23 29.85 0.13 -3.81 16 18 C -0.06 -1.86 4.42 29.85 0.13 -1.73 16 19 C -0.09 -2.53 5.14 -19.83 -0.10 -2.63 16 20 C -0.09 -1.63 9.68 22.27 0.22 -1.41 16 21 C -0.08 -1.04 10.04 22.27 0.22 -0.82 16 22 C -0.12 -2.03 10.02 22.31 0.22 -1.81 16 23 C 0.04 1.17 7.31 22.41 0.16 1.34 16 24 F -0.14 -4.17 17.18 44.97 0.77 -3.40 16 25 C 0.03 1.04 7.25 22.41 0.16 1.20 16 26 F -0.15 -5.83 16.48 44.97 0.74 -5.09 16 27 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 28 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.14 6.73 6.28 -2.39 -0.02 6.72 16 31 H 0.08 3.91 7.36 -2.39 -0.02 3.89 16 32 H 0.27 13.59 8.32 -92.71 -0.77 12.82 16 33 H 0.07 2.98 8.03 -2.39 -0.02 2.96 16 34 H 0.11 3.63 7.74 -2.39 -0.02 3.61 16 35 H 0.10 3.04 7.95 -2.39 -0.02 3.02 16 36 H 0.05 1.99 7.78 -2.39 -0.02 1.97 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -72.20 347.58 8.32 -63.88 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 1.09 Total: 21.27 kcal Atomic # 6 Polarization: 28.68 SS G_CDS: 5.10 Total: 33.78 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.17 Total: -70.65 kcal Atomic # 8 Polarization: -81.58 SS G_CDS: -0.24 Total: -81.82 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 1.51 Total: -8.49 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -72.20 8.32 -63.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120506565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.709 kcal (2) G-P(sol) polarization free energy of solvation -72.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds