Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.54705 * 2 1 4 4 C 1.53103 * 109.50742 * 120.10867 * 2 1 3 5 5 N 1.47016 * 109.29298 * 63.10819 * 4 2 1 6 6 C 1.46894 * 110.99844 * 182.37346 * 5 4 2 7 7 C 1.53005 * 109.47005 * 293.95104 * 6 5 4 8 8 C 1.53002 * 109.46856 * 180.02562 * 7 6 5 9 9 S 1.81000 * 109.46824 * 179.97438 * 8 7 6 10 10 C 1.76198 * 99.99947 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00168 * 0.02562 * 10 9 8 12 12 C 1.38805 * 120.00177 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99820 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46867 * 59.99933 * 14 12 10 16 16 H 1.48500 * 109.47212 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47043 * 299.99883 * 14 12 10 18 18 C 1.47009 * 110.75376 * 58.59374 * 5 4 2 19 19 C 1.53093 * 109.26071 * 301.38357 * 18 5 4 20 20 H 1.09004 * 109.51138 * 296.91641 * 19 18 5 21 21 C 1.50700 * 109.51106 * 176.78442 * 19 18 5 22 22 C 1.38427 * 122.53961 * 99.73343 * 21 19 18 23 23 C 1.33390 * 114.91993 * 179.76491 * 22 21 19 24 24 S 1.75885 * 109.59136 * 0.47707 * 23 22 21 25 25 C 1.33388 * 122.54020 * 280.02830 * 21 19 18 26 26 O 1.43015 * 109.25965 * 56.84798 * 19 18 5 27 27 H 1.09008 * 109.47034 * 299.89217 * 1 2 3 28 28 H 1.09000 * 109.47106 * 59.89223 * 1 2 3 29 29 H 1.08997 * 109.47263 * 179.89149 * 1 2 3 30 30 H 1.09002 * 109.50635 * 303.14910 * 4 2 1 31 31 H 1.09003 * 109.50698 * 183.06522 * 4 2 1 32 32 H 1.09008 * 109.47347 * 53.95013 * 6 5 4 33 33 H 1.09004 * 109.47299 * 173.95281 * 6 5 4 34 34 H 1.08998 * 109.47003 * 299.99544 * 7 6 5 35 35 H 1.08997 * 109.47145 * 60.00233 * 7 6 5 36 36 H 1.08998 * 109.47323 * 299.99760 * 8 7 6 37 37 H 1.09004 * 109.47468 * 60.00165 * 8 7 6 38 38 H 0.96993 * 119.99710 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.50528 * 61.32115 * 18 5 4 40 40 H 1.09003 * 109.50599 * 181.44906 * 18 5 4 41 41 H 1.07998 * 122.53427 * 0.02562 * 22 21 19 42 42 H 1.07993 * 125.20440 * 180.21203 * 23 22 21 43 43 H 1.08005 * 125.19957 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2484 5 7 1.6118 -2.1293 1.2050 6 6 2.0352 -2.8467 2.4149 7 6 3.5624 -2.9336 2.4482 8 6 4.0033 -3.6814 3.7081 9 16 5.8099 -3.7848 3.7470 10 6 6.0335 -4.6661 5.2563 11 1 5.1749 -4.9647 5.8395 12 6 7.3130 -4.9765 5.6958 13 7 8.3594 -4.6121 4.9852 14 14 7.5500 -5.9114 7.2955 15 1 6.8726 -7.2297 7.2034 16 1 9.0005 -6.1167 7.5387 17 1 6.9652 -5.1316 8.4159 18 6 2.1193 -2.7919 -0.0052 19 6 1.6065 -2.0480 -1.2410 20 1 0.5187 -2.1082 -1.2768 21 6 2.1870 -2.6746 -2.4826 22 6 1.4787 -3.5696 -3.2658 23 6 2.1371 -4.0268 -4.3320 24 16 3.7479 -3.3220 -4.3775 25 6 3.4243 -2.4132 -2.9069 26 8 2.0066 -0.6770 -1.1662 27 1 -0.3633 0.5122 0.8910 28 1 -0.3633 0.5155 -0.8890 29 1 -0.3634 -1.0276 -0.0019 30 1 1.6331 -0.2460 2.1390 31 1 3.1298 -0.6767 1.2764 32 1 1.6824 -2.3117 3.2968 33 1 1.6141 -3.8521 2.4073 34 1 3.9151 -3.4686 1.5664 35 1 3.9834 -1.9283 2.4558 36 1 3.6506 -3.1468 4.5900 37 1 3.5823 -4.6868 3.7000 38 1 9.2535 -4.8293 5.2921 39 1 3.2092 -2.7777 0.0020 40 1 1.7683 -3.8236 -0.0297 41 1 0.4681 -3.8714 -3.0336 42 1 1.7430 -4.7263 -5.0543 43 1 4.1207 -1.7452 -2.4217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120526321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = -14.913749 kcal Electronic energy + Delta-G solvation = -23173.866595 eV Core-core repulsion = 19857.749232 eV Total energy + Delta-G solvation = -3316.117363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43375 -38.00327 -36.53145 -32.72982 -32.46562 -32.27556 -29.89340 -28.52747 -26.71982 -25.62469 -25.12001 -23.47741 -22.89968 -21.29839 -19.29345 -18.92461 -17.95138 -17.48035 -16.64329 -16.45563 -15.29847 -15.15694 -14.89744 -14.81601 -14.64987 -14.48056 -14.19759 -13.55711 -13.27030 -13.10009 -12.97217 -12.73338 -12.59686 -12.28836 -12.02129 -11.92469 -11.85985 -11.65352 -11.50516 -11.28332 -11.05755 -10.91184 -10.85758 -10.72671 -10.41985 -10.27667 -9.80015 -9.68624 -9.06303 -8.95053 -8.56897 -8.40904 -8.17937 -6.54923 -6.23752 -3.94530 0.86179 1.50310 1.83097 2.44241 3.20786 3.22253 3.26926 3.55901 3.59089 3.82932 4.21364 4.66751 4.71422 4.82847 4.92585 4.94105 5.05867 5.07789 5.12127 5.21291 5.26604 5.28318 5.31352 5.45231 5.46576 5.55476 5.63181 5.71124 5.74658 5.75067 5.83517 5.87697 5.88795 6.05859 6.14801 6.16898 6.28925 6.32108 6.47192 6.68226 6.91694 6.93620 7.08761 7.59038 8.35273 9.22318 10.84426 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002733 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.132923 B =10242.321422 C =11651.543017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.531 5.531 6 C 0.058 3.942 7 C -0.135 4.135 8 C -0.108 4.108 9 S -0.136 6.136 10 C -0.517 4.517 11 H 0.072 0.928 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.024 3.976 19 C 0.156 3.844 20 H 0.077 0.923 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.216 4.216 24 S 0.095 5.905 25 C -0.175 4.175 26 O -0.373 6.373 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 6.361 -16.684 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.033 3.967 3 H 0.123 0.877 4 C -0.112 4.112 5 N -0.254 5.254 6 C -0.071 4.071 7 C -0.175 4.175 8 C -0.258 4.258 9 S 0.092 5.908 10 C -0.665 4.665 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.104 4.104 19 C 0.095 3.905 20 H 0.094 0.906 21 C -0.119 4.119 22 C -0.153 4.153 23 C -0.351 4.351 24 S 0.359 5.641 25 C -0.311 4.311 26 O -0.292 6.292 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.682 6.687 -18.589 24.613 hybrid contribution -1.061 -1.086 3.151 3.498 sum -15.742 5.601 -15.438 22.749 Atomic orbital electron populations 1.22284 0.95676 1.03388 1.01887 1.22280 0.94278 0.95866 0.84260 0.87732 1.22849 0.99611 0.89721 0.99041 1.62513 1.58622 1.01902 1.02353 1.22296 0.93932 0.99120 0.91771 1.21935 0.96021 1.01072 0.98427 1.23172 1.02484 1.01366 0.98758 1.84639 0.97717 1.75233 1.33234 1.22643 0.95092 1.41420 1.07327 0.91015 1.25021 0.94986 0.95786 0.97990 1.70015 0.98389 1.44276 1.37877 0.86223 0.77287 0.79951 0.82073 1.19913 1.20799 1.19926 1.22808 0.99429 0.98785 0.89390 1.20514 0.97983 0.81560 0.90394 0.90570 1.18596 0.94321 1.00508 0.98445 1.19955 1.01487 0.98955 0.94933 1.25536 0.97962 1.07787 1.03863 1.84355 1.14368 1.40807 1.24618 1.25544 1.00387 1.05058 1.00108 1.88046 1.75708 1.22507 1.42967 0.91712 0.92545 0.91008 0.89601 0.93060 0.90525 0.90484 0.91429 0.91602 0.92169 0.92141 0.92249 0.92732 0.89608 0.84137 0.81803 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.89 37.15 0.33 -1.20 16 2 C 0.09 0.91 3.93 -26.68 -0.10 0.81 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.02 0.18 4.74 -3.71 -0.02 0.16 16 5 N -0.53 -6.22 4.31 -234.30 -1.01 -7.23 16 6 C 0.06 0.75 5.38 -3.82 -0.02 0.73 16 7 C -0.13 -2.17 4.50 -26.73 -0.12 -2.29 16 8 C -0.11 -2.18 5.67 37.16 0.21 -1.97 16 9 S -0.14 -3.60 21.44 -107.50 -2.30 -5.90 16 10 C -0.52 -14.92 9.50 30.94 0.29 -14.62 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 14 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 18 C 0.02 0.29 4.39 -3.72 -0.02 0.27 16 19 C 0.16 1.72 2.70 -27.83 -0.08 1.64 16 20 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 21 C -0.11 -1.16 4.88 -106.25 -0.52 -1.68 16 22 C -0.12 -1.16 9.95 -41.21 -0.41 -1.57 16 23 C -0.22 -1.91 11.23 29.04 0.33 -1.58 16 24 S 0.09 0.92 23.34 -107.50 -2.51 -1.59 16 25 C -0.18 -1.96 10.57 29.04 0.31 -1.66 16 26 O -0.37 -4.45 9.88 -35.23 -0.35 -4.79 16 27 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.69 6.12 -51.93 -0.32 0.37 16 30 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.05 0.65 6.59 -51.93 -0.34 0.31 16 32 H 0.08 0.95 8.11 -51.92 -0.42 0.53 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.14 6.42 -51.93 -0.33 0.81 16 35 H 0.07 1.10 6.61 -51.93 -0.34 0.76 16 36 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.06 1.21 8.14 -51.91 -0.42 0.78 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.17 1.88 8.05 -52.48 -0.42 1.46 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -31.46 366.97 -11.46 -42.92 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.62 Total: 0.95 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 0.09 Total: -21.03 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: -0.28 Total: -32.68 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.35 Total: -4.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -4.81 Total: -7.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.46 -11.46 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120526321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.005 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds