Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.54705 * 2 1 4 4 C 1.53103 * 109.50742 * 120.10867 * 2 1 3 5 5 N 1.47016 * 109.29298 * 63.10819 * 4 2 1 6 6 C 1.46894 * 110.99844 * 182.37346 * 5 4 2 7 7 C 1.53005 * 109.47005 * 293.95104 * 6 5 4 8 8 C 1.53002 * 109.46856 * 180.02562 * 7 6 5 9 9 S 1.81000 * 109.46824 * 179.97438 * 8 7 6 10 10 C 1.76198 * 99.99947 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00168 * 0.02562 * 10 9 8 12 12 C 1.38805 * 120.00177 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99820 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46867 * 59.99933 * 14 12 10 16 16 H 1.48500 * 109.47212 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47043 * 299.99883 * 14 12 10 18 18 C 1.47009 * 110.75376 * 58.59374 * 5 4 2 19 19 C 1.53093 * 109.26071 * 301.38357 * 18 5 4 20 20 H 1.09004 * 109.51138 * 296.91641 * 19 18 5 21 21 C 1.50700 * 109.51106 * 176.78442 * 19 18 5 22 22 C 1.38427 * 122.53961 * 99.73343 * 21 19 18 23 23 C 1.33390 * 114.91993 * 179.76491 * 22 21 19 24 24 S 1.75885 * 109.59136 * 0.47707 * 23 22 21 25 25 C 1.33388 * 122.54020 * 280.02830 * 21 19 18 26 26 O 1.43015 * 109.25965 * 56.84798 * 19 18 5 27 27 H 1.09008 * 109.47034 * 299.89217 * 1 2 3 28 28 H 1.09000 * 109.47106 * 59.89223 * 1 2 3 29 29 H 1.08997 * 109.47263 * 179.89149 * 1 2 3 30 30 H 1.09002 * 109.50635 * 303.14910 * 4 2 1 31 31 H 1.09003 * 109.50698 * 183.06522 * 4 2 1 32 32 H 1.09008 * 109.47347 * 53.95013 * 6 5 4 33 33 H 1.09004 * 109.47299 * 173.95281 * 6 5 4 34 34 H 1.08998 * 109.47003 * 299.99544 * 7 6 5 35 35 H 1.08997 * 109.47145 * 60.00233 * 7 6 5 36 36 H 1.08998 * 109.47323 * 299.99760 * 8 7 6 37 37 H 1.09004 * 109.47468 * 60.00165 * 8 7 6 38 38 H 0.96993 * 119.99710 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.50528 * 61.32115 * 18 5 4 40 40 H 1.09003 * 109.50599 * 181.44906 * 18 5 4 41 41 H 1.07998 * 122.53427 * 0.02562 * 22 21 19 42 42 H 1.07993 * 125.20440 * 180.21203 * 23 22 21 43 43 H 1.08005 * 125.19957 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2484 5 7 1.6118 -2.1293 1.2050 6 6 2.0352 -2.8467 2.4149 7 6 3.5624 -2.9336 2.4482 8 6 4.0033 -3.6814 3.7081 9 16 5.8099 -3.7848 3.7470 10 6 6.0335 -4.6661 5.2563 11 1 5.1749 -4.9647 5.8395 12 6 7.3130 -4.9765 5.6958 13 7 8.3594 -4.6121 4.9852 14 14 7.5500 -5.9114 7.2955 15 1 6.8726 -7.2297 7.2034 16 1 9.0005 -6.1167 7.5387 17 1 6.9652 -5.1316 8.4159 18 6 2.1193 -2.7919 -0.0052 19 6 1.6065 -2.0480 -1.2410 20 1 0.5187 -2.1082 -1.2768 21 6 2.1870 -2.6746 -2.4826 22 6 1.4787 -3.5696 -3.2658 23 6 2.1371 -4.0268 -4.3320 24 16 3.7479 -3.3220 -4.3775 25 6 3.4243 -2.4132 -2.9069 26 8 2.0066 -0.6770 -1.1662 27 1 -0.3633 0.5122 0.8910 28 1 -0.3633 0.5155 -0.8890 29 1 -0.3634 -1.0276 -0.0019 30 1 1.6331 -0.2460 2.1390 31 1 3.1298 -0.6767 1.2764 32 1 1.6824 -2.3117 3.2968 33 1 1.6141 -3.8521 2.4073 34 1 3.9151 -3.4686 1.5664 35 1 3.9834 -1.9283 2.4558 36 1 3.6506 -3.1468 4.5900 37 1 3.5823 -4.6868 3.7000 38 1 9.2535 -4.8293 5.2921 39 1 3.2092 -2.7777 0.0020 40 1 1.7683 -3.8236 -0.0297 41 1 0.4681 -3.8714 -3.0336 42 1 1.7430 -4.7263 -5.0543 43 1 4.1207 -1.7452 -2.4217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120526321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = -33.355399 kcal Electronic energy + Delta-G solvation = -23174.666285 eV Core-core repulsion = 19857.749232 eV Total energy + Delta-G solvation = -3316.917053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32828 -38.82176 -37.54219 -34.63733 -33.79914 -33.33057 -30.73566 -29.41169 -27.99117 -27.51424 -26.07405 -24.66801 -23.72295 -22.44147 -20.22113 -19.78708 -19.52032 -18.72979 -17.55295 -17.36989 -16.91887 -16.36993 -16.25623 -15.95650 -15.90733 -15.62572 -15.23116 -14.99219 -14.46325 -14.06451 -13.84385 -13.79533 -13.49027 -13.41115 -13.29991 -13.18039 -12.92819 -12.86741 -12.71075 -12.58113 -12.57237 -12.50541 -12.13304 -11.73476 -11.65223 -11.52014 -11.21146 -11.15408 -10.64969 -10.38847 -9.72276 -9.37539 -9.28970 -8.71075 -8.39560 -6.17004 0.08496 0.73733 1.07512 1.29410 1.39260 1.46140 1.66814 1.72668 2.26348 2.78050 2.84164 2.94616 3.28541 3.80429 3.84777 3.90050 3.99370 4.07544 4.13073 4.16059 4.21583 4.32535 4.35959 4.44135 4.52473 4.54395 4.61589 4.68747 4.71840 4.80459 4.87479 4.89717 4.98460 5.06349 5.10497 5.11970 5.25530 5.36772 5.41193 5.43153 5.52687 5.90412 5.94201 6.15407 6.25518 7.02250 8.69688 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002733 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.132923 B =10242.321422 C =11651.543017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.520 5.520 6 C 0.068 3.932 7 C -0.121 4.121 8 C -0.082 4.082 9 S -0.208 6.208 10 C -0.538 4.538 11 H 0.074 0.926 12 C 0.014 3.986 13 N -0.909 5.909 14 Si 0.995 3.005 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.263 1.263 18 C 0.027 3.973 19 C 0.161 3.839 20 H 0.088 0.912 21 C -0.112 4.112 22 C -0.134 4.134 23 C -0.207 4.207 24 S 0.093 5.907 25 C -0.201 4.201 26 O -0.390 6.390 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.271 0.729 39 H 0.030 0.970 40 H 0.091 0.909 41 H 0.163 0.837 42 H 0.192 0.808 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 5.843 -16.327 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.134 0.866 4 C -0.113 4.113 5 N -0.243 5.243 6 C -0.062 4.062 7 C -0.161 4.161 8 C -0.232 4.232 9 S 0.021 5.979 10 C -0.686 4.686 11 H 0.092 0.908 12 C -0.191 4.191 13 N -0.545 5.545 14 Si 0.816 3.184 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.188 1.188 18 C -0.102 4.102 19 C 0.101 3.899 20 H 0.106 0.894 21 C -0.125 4.125 22 C -0.164 4.164 23 C -0.342 4.342 24 S 0.357 5.643 25 C -0.337 4.337 26 O -0.310 6.310 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.109 0.891 41 H 0.181 0.819 42 H 0.209 0.791 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.983 6.180 -18.246 25.682 hybrid contribution -0.384 -0.878 2.959 3.110 sum -17.368 5.302 -15.287 23.737 Atomic orbital electron populations 1.22212 0.94214 1.03202 1.02792 1.22439 0.95392 0.96060 0.83074 0.86571 1.22923 0.98422 0.89546 1.00447 1.62578 1.57822 1.02112 1.01757 1.22227 0.90893 1.00148 0.92912 1.21846 0.98631 0.99700 0.95896 1.23106 0.96929 1.02258 1.00892 1.84708 1.04498 1.75386 1.33357 1.23004 0.95694 1.41895 1.07964 0.90775 1.26106 0.94464 0.96548 1.01943 1.70159 0.98968 1.45455 1.39928 0.85055 0.77612 0.78614 0.77081 1.18824 1.19996 1.18792 1.22788 0.97912 0.99393 0.90072 1.20505 0.98434 0.81093 0.89893 0.89388 1.18818 0.94355 1.00758 0.98601 1.20177 1.02511 0.98780 0.94898 1.25913 0.96938 1.07392 1.04004 1.84324 1.15520 1.40688 1.23774 1.25572 1.00779 1.06030 1.01299 1.88038 1.76243 1.22973 1.43747 0.90423 0.92034 0.91649 0.88111 0.95218 0.89259 0.89596 0.92521 0.92422 0.91613 0.91753 0.91969 0.95214 0.89077 0.81949 0.79071 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.89 71.98 0.64 -1.91 16 2 C 0.09 1.66 3.93 30.63 0.12 1.78 16 3 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.01 0.31 4.74 86.32 0.41 0.72 16 5 N -0.52 -11.50 4.31 -895.20 -3.86 -15.36 16 6 C 0.07 1.64 5.38 86.31 0.46 2.11 16 7 C -0.12 -3.89 4.50 30.60 0.14 -3.75 16 8 C -0.08 -3.30 5.67 71.98 0.41 -2.89 16 9 S -0.21 -11.28 21.44 -56.49 -1.21 -12.49 16 10 C -0.54 -31.39 9.50 67.96 0.65 -30.75 16 11 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 12 C 0.01 0.82 5.49 84.86 0.47 1.28 16 13 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 14 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 18 C 0.03 0.63 4.39 86.31 0.38 1.01 16 19 C 0.16 3.43 2.70 29.88 0.08 3.51 16 20 H 0.09 1.67 6.44 -2.38 -0.02 1.65 16 21 C -0.11 -2.41 4.88 -20.92 -0.10 -2.51 16 22 C -0.13 -2.31 9.95 21.22 0.21 -2.10 16 23 C -0.21 -3.28 11.23 66.72 0.75 -2.53 16 24 S 0.09 1.78 23.34 -56.49 -1.32 0.46 16 25 C -0.20 -4.64 10.57 66.72 0.70 -3.93 16 26 O -0.39 -9.16 9.88 -148.98 -1.47 -10.63 16 27 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.09 6.12 -2.39 -0.01 1.08 16 30 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 31 H 0.03 0.76 6.59 -2.39 -0.02 0.75 16 32 H 0.09 1.99 8.11 -2.38 -0.02 1.97 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.06 1.96 6.42 -2.39 -0.02 1.94 16 35 H 0.06 1.96 6.61 -2.39 -0.02 1.94 16 36 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.03 0.85 6.40 -2.39 -0.02 0.83 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.16 3.81 8.05 -2.91 -0.02 3.79 16 Total: -1.00 -68.78 366.97 0.76 -68.02 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.99 Total: 19.14 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 5.31 Total: -39.98 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -3.57 Total: -70.69 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.47 Total: -10.63 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -9.50 SS G_CDS: -2.53 Total: -12.03 kcal Total: -68.78 0.76 -68.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120526321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.663 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds