Wall clock time and date at job start Tue Mar 31 2020 15:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 117.00232 * 2 1 4 4 O 1.20822 * 120.00076 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00134 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47097 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99843 * 267.88417 * 6 5 3 8 8 H 1.07996 * 120.00306 * 43.83737 * 7 6 5 9 9 C 1.38954 * 119.99550 * 223.83501 * 7 6 5 10 10 N 1.31406 * 120.00017 * 354.83574 * 9 7 6 11 11 Si 1.86797 * 119.99564 * 174.83372 * 9 7 6 12 12 H 1.48502 * 109.47298 * 90.00038 * 11 9 7 13 13 H 1.48509 * 109.47182 * 210.00028 * 11 9 7 14 14 H 1.48496 * 109.47343 * 329.99975 * 11 9 7 15 15 C 1.34776 * 119.99945 * 87.88121 * 6 5 3 16 16 O 1.21287 * 120.00059 * 183.80359 * 15 6 5 17 17 C 1.50699 * 120.00101 * 3.81156 * 15 6 5 18 18 H 1.09001 * 109.47156 * 318.18135 * 17 15 6 19 19 C 1.53002 * 109.47114 * 78.17641 * 17 15 6 20 20 C 1.50696 * 109.47357 * 198.17816 * 17 15 6 21 21 C 1.38420 * 120.02473 * 119.99502 * 20 17 15 22 22 F 1.35094 * 120.01364 * 0.02562 * 21 20 17 23 23 C 1.38472 * 119.97383 * 179.97438 * 21 20 17 24 24 C 1.38204 * 120.02659 * 0.28289 * 23 21 20 25 25 C 1.38210 * 120.04984 * 359.44458 * 24 23 21 26 26 C 1.38417 * 120.02561 * 299.97955 * 20 17 15 27 27 F 1.35100 * 120.01506 * 359.97438 * 26 20 17 28 28 H 1.08997 * 109.47007 * 300.00025 * 1 2 3 29 29 H 1.09002 * 109.47253 * 60.00078 * 1 2 3 30 30 H 1.09003 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46969 * 60.00009 * 5 3 2 32 32 H 1.09002 * 109.47084 * 300.00225 * 5 3 2 33 33 H 0.97007 * 119.99415 * 184.23634 * 10 9 7 34 34 H 1.08998 * 109.46907 * 185.77347 * 19 17 15 35 35 H 1.09001 * 109.47537 * 305.77520 * 19 17 15 36 36 H 1.09005 * 109.46737 * 65.78041 * 19 17 15 37 37 H 1.08000 * 119.98691 * 179.97438 * 23 21 20 38 38 H 1.08004 * 119.97814 * 179.69603 * 24 23 21 39 39 H 1.07998 * 119.98935 * 180.25774 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2186 3.3249 -1.1852 8 1 3.5375 3.1989 -2.0138 9 6 5.3350 4.1410 -1.3213 10 7 6.1077 4.3755 -0.2846 11 14 5.7371 4.9046 -2.9779 12 1 5.0664 6.2248 -3.0904 13 1 7.2065 5.0843 -3.0966 14 1 5.2583 4.0120 -4.0638 15 6 4.1310 3.3378 1.1677 16 8 4.4075 4.5188 1.1667 17 6 3.9545 2.6065 2.4734 18 1 3.0950 1.9398 2.4031 19 6 5.2117 1.7877 2.7734 20 6 3.7280 3.6031 3.5809 21 6 2.5578 3.5639 4.3192 22 9 1.6183 2.6319 4.0477 23 6 2.3510 4.4799 5.3369 24 6 3.3098 5.4365 5.6118 25 6 4.4810 5.4730 4.8789 26 6 4.6901 4.5580 3.8607 27 9 5.8330 4.5969 3.1415 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 6.8512 4.9935 -0.3640 34 1 5.0458 1.1798 3.6628 35 1 5.4336 1.1389 1.9261 36 1 6.0514 2.4612 2.9451 37 1 1.4378 4.4498 5.9128 38 1 3.1455 6.1536 6.4025 39 1 5.2314 6.2183 5.0973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123628974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:15 Heat of formation + Delta-G solvation = -149.768950 kcal Electronic energy + Delta-G solvation = -29712.367895 eV Core-core repulsion = 25257.976419 eV Total energy + Delta-G solvation = -4454.391475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.71550 -48.17366 -40.01362 -38.92748 -37.85962 -35.91730 -34.15453 -33.54545 -31.64053 -29.94323 -29.15435 -28.46278 -26.31234 -25.00936 -23.77309 -22.45717 -21.73496 -20.67616 -19.03995 -17.65180 -17.26506 -17.14832 -16.61962 -16.11089 -15.97721 -15.52415 -15.51397 -15.15625 -15.05738 -14.64774 -14.52072 -14.12194 -13.91814 -13.56252 -13.20776 -13.06898 -12.95077 -12.49904 -12.25742 -12.06472 -11.79437 -11.65646 -11.59653 -11.49016 -11.41076 -11.14715 -10.89521 -10.88179 -10.43148 -10.40804 -10.35716 -10.08934 -9.95117 -8.82848 -8.57527 -8.32657 -7.87861 -7.18484 -5.87797 -3.87671 1.28487 1.37666 2.80123 3.10382 3.33066 3.38783 3.39608 3.66997 4.24448 4.31582 4.49032 4.73682 4.82435 4.92613 5.06964 5.11745 5.25944 5.32327 5.38885 5.40448 5.42947 5.64364 5.67640 5.74261 5.80306 5.89505 6.03080 6.09285 6.16211 6.23234 6.31515 6.35347 6.42145 6.44647 6.73175 6.82228 7.14297 7.67228 8.23227 8.37756 9.06906 9.16499 9.63872 10.34161 11.04074 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.007080 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.533627 B = 3953.835327 C = 6113.130536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.429 3.571 4 O -0.488 6.488 5 C 0.114 3.886 6 N -0.445 5.445 7 C -0.336 4.336 8 H 0.077 0.923 9 C 0.049 3.951 10 N -0.806 5.806 11 Si 0.914 3.086 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.485 3.515 16 O -0.477 6.477 17 C -0.075 4.075 18 H 0.082 0.918 19 C -0.139 4.139 20 C -0.130 4.130 21 C 0.128 3.872 22 F -0.135 7.135 23 C -0.180 4.180 24 C -0.070 4.070 25 C -0.179 4.179 26 C 0.178 3.822 27 F -0.100 7.100 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 -6.440 9.981 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.287 6.287 3 C 0.269 3.731 4 O -0.373 6.373 5 C -0.014 4.014 6 N -0.168 5.168 7 C -0.463 4.463 8 H 0.095 0.905 9 C -0.162 4.162 10 N -0.440 5.440 11 Si 0.741 3.259 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.270 3.730 16 O -0.349 6.349 17 C -0.097 4.097 18 H 0.100 0.900 19 C -0.197 4.197 20 C -0.132 4.132 21 C 0.108 3.892 22 F -0.113 7.113 23 C -0.199 4.199 24 C -0.088 4.088 25 C -0.198 4.198 26 C 0.158 3.842 27 F -0.077 7.077 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.509 -5.432 9.997 12.238 hybrid contribution -0.239 0.269 -1.045 1.105 sum -4.747 -5.164 8.952 11.372 Atomic orbital electron populations 1.23122 0.77796 1.02765 1.02207 1.86533 1.22465 1.34767 1.84929 1.25533 0.93833 0.81103 0.72645 1.90670 1.66767 1.36271 1.43551 1.21203 0.85381 0.89708 1.05064 1.42930 1.62465 1.05572 1.05856 1.18994 1.06882 1.30607 0.89819 0.90514 1.25357 0.95371 0.98266 0.97201 1.70138 1.15052 1.31206 1.27647 0.86164 0.77377 0.79435 0.82924 1.20799 1.21153 1.19817 1.19417 0.82978 0.87550 0.83025 1.90558 1.44308 1.14959 1.85047 1.20269 0.99988 0.95852 0.93628 0.90014 1.21797 0.96978 0.99696 1.01193 1.19597 0.94028 1.00227 0.99376 1.17219 0.86262 0.89265 0.96425 1.91471 1.63232 1.63453 1.93176 1.20977 1.01830 0.97352 0.99698 1.20685 0.92172 0.97180 0.98735 1.21180 1.00082 1.00842 0.97745 1.17140 0.83428 0.94052 0.89610 1.91643 1.45523 1.94975 1.75587 0.92357 0.92376 0.88777 0.86843 0.88339 0.92964 0.92923 0.91403 0.90898 0.84702 0.84611 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.03 10.56 -39.25 -0.41 -6.45 16 3 C 0.43 8.50 7.52 36.01 0.27 8.77 16 4 O -0.49 -11.54 16.15 -18.75 -0.30 -11.84 16 5 C 0.11 2.25 5.53 -5.19 -0.03 2.22 16 6 N -0.44 -11.22 2.07 -116.09 -0.24 -11.46 16 7 C -0.34 -9.30 9.24 -14.93 -0.14 -9.44 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 C 0.05 1.36 5.07 -17.47 -0.09 1.27 16 10 N -0.81 -23.37 10.22 55.50 0.57 -22.81 16 11 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.48 12.46 5.76 -10.99 -0.06 12.40 16 16 O -0.48 -14.05 10.74 5.55 0.06 -13.99 16 17 C -0.08 -1.56 1.94 -92.93 -0.18 -1.74 16 18 H 0.08 1.63 5.76 -51.93 -0.30 1.33 16 19 C -0.14 -2.49 8.70 37.16 0.32 -2.17 16 20 C -0.13 -2.57 4.59 -104.49 -0.48 -3.05 16 21 C 0.13 2.24 7.25 -39.43 -0.29 1.95 16 22 F -0.13 -2.39 16.19 2.25 0.04 -2.36 16 23 C -0.18 -2.53 10.02 -39.51 -0.40 -2.93 16 24 C -0.07 -0.90 10.04 -39.60 -0.40 -1.30 16 25 C -0.18 -2.77 10.03 -39.50 -0.40 -3.17 16 26 C 0.18 3.47 6.10 -39.43 -0.24 3.23 16 27 F -0.10 -2.24 13.19 2.25 0.03 -2.21 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 2.01 8.02 -51.93 -0.42 1.60 16 32 H 0.10 1.67 4.92 -51.93 -0.26 1.42 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.16 6.50 -51.93 -0.34 0.82 16 36 H 0.07 1.42 6.16 -51.93 -0.32 1.10 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 39 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -35.29 336.57 -5.38 -40.68 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.13 Total: 1.12 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.03 Total: 7.57 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.33 Total: -34.27 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.66 Total: -32.28 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.29 -5.38 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123628974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.093 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds