Wall clock time and date at job start Tue Mar 31 2020 15:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 117.00232 * 2 1 4 4 O 1.20822 * 120.00076 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00134 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47097 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99843 * 267.88417 * 6 5 3 8 8 H 1.07996 * 120.00306 * 43.83737 * 7 6 5 9 9 C 1.38954 * 119.99550 * 223.83501 * 7 6 5 10 10 N 1.31406 * 120.00017 * 354.83574 * 9 7 6 11 11 Si 1.86797 * 119.99564 * 174.83372 * 9 7 6 12 12 H 1.48502 * 109.47298 * 90.00038 * 11 9 7 13 13 H 1.48509 * 109.47182 * 210.00028 * 11 9 7 14 14 H 1.48496 * 109.47343 * 329.99975 * 11 9 7 15 15 C 1.34776 * 119.99945 * 87.88121 * 6 5 3 16 16 O 1.21287 * 120.00059 * 183.80359 * 15 6 5 17 17 C 1.50699 * 120.00101 * 3.81156 * 15 6 5 18 18 H 1.09001 * 109.47156 * 318.18135 * 17 15 6 19 19 C 1.53002 * 109.47114 * 78.17641 * 17 15 6 20 20 C 1.50696 * 109.47357 * 198.17816 * 17 15 6 21 21 C 1.38420 * 120.02473 * 119.99502 * 20 17 15 22 22 F 1.35094 * 120.01364 * 0.02562 * 21 20 17 23 23 C 1.38472 * 119.97383 * 179.97438 * 21 20 17 24 24 C 1.38204 * 120.02659 * 0.28289 * 23 21 20 25 25 C 1.38210 * 120.04984 * 359.44458 * 24 23 21 26 26 C 1.38417 * 120.02561 * 299.97955 * 20 17 15 27 27 F 1.35100 * 120.01506 * 359.97438 * 26 20 17 28 28 H 1.08997 * 109.47007 * 300.00025 * 1 2 3 29 29 H 1.09002 * 109.47253 * 60.00078 * 1 2 3 30 30 H 1.09003 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46969 * 60.00009 * 5 3 2 32 32 H 1.09002 * 109.47084 * 300.00225 * 5 3 2 33 33 H 0.97007 * 119.99415 * 184.23634 * 10 9 7 34 34 H 1.08998 * 109.46907 * 185.77347 * 19 17 15 35 35 H 1.09001 * 109.47537 * 305.77520 * 19 17 15 36 36 H 1.09005 * 109.46737 * 65.78041 * 19 17 15 37 37 H 1.08000 * 119.98691 * 179.97438 * 23 21 20 38 38 H 1.08004 * 119.97814 * 179.69603 * 24 23 21 39 39 H 1.07998 * 119.98935 * 180.25774 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2186 3.3249 -1.1852 8 1 3.5375 3.1989 -2.0138 9 6 5.3350 4.1410 -1.3213 10 7 6.1077 4.3755 -0.2846 11 14 5.7371 4.9046 -2.9779 12 1 5.0664 6.2248 -3.0904 13 1 7.2065 5.0843 -3.0966 14 1 5.2583 4.0120 -4.0638 15 6 4.1310 3.3378 1.1677 16 8 4.4075 4.5188 1.1667 17 6 3.9545 2.6065 2.4734 18 1 3.0950 1.9398 2.4031 19 6 5.2117 1.7877 2.7734 20 6 3.7280 3.6031 3.5809 21 6 2.5578 3.5639 4.3192 22 9 1.6183 2.6319 4.0477 23 6 2.3510 4.4799 5.3369 24 6 3.3098 5.4365 5.6118 25 6 4.4810 5.4730 4.8789 26 6 4.6901 4.5580 3.8607 27 9 5.8330 4.5969 3.1415 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 6.8512 4.9935 -0.3640 34 1 5.0458 1.1798 3.6628 35 1 5.4336 1.1389 1.9261 36 1 6.0514 2.4612 2.9451 37 1 1.4378 4.4498 5.9128 38 1 3.1455 6.1536 6.4025 39 1 5.2314 6.2183 5.0973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123628974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:14 Heat of formation + Delta-G solvation = -171.429129 kcal Electronic energy + Delta-G solvation = -29713.307151 eV Core-core repulsion = 25257.976419 eV Total energy + Delta-G solvation = -4455.330731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03818 -49.67766 -41.60247 -40.46352 -39.34949 -37.45874 -35.97321 -35.23150 -33.58984 -31.17004 -30.50732 -29.97684 -27.77115 -26.82566 -25.29770 -23.73383 -23.27721 -22.19796 -20.79190 -18.97522 -18.87052 -18.69178 -18.29743 -17.61784 -17.48189 -17.08624 -16.85743 -16.75627 -16.46216 -16.26584 -16.07095 -15.78381 -15.34332 -15.17816 -14.80879 -14.47927 -14.39366 -14.10498 -13.60082 -13.51129 -13.30644 -13.24904 -12.97290 -12.91221 -12.85369 -12.81862 -12.71386 -12.53282 -12.20814 -12.01107 -11.81152 -11.75801 -11.63337 -10.85404 -10.04224 -9.67561 -9.60939 -9.18483 -7.95241 -6.00284 0.03372 0.12674 1.22478 1.40838 1.43684 1.52451 1.68248 2.32995 2.43596 2.66857 3.04796 3.10999 3.22093 3.49366 3.57369 3.71627 3.93555 4.01309 4.12673 4.15898 4.28059 4.30243 4.33073 4.35105 4.39121 4.51956 4.69858 4.74353 4.80412 4.91460 5.04234 5.09559 5.14478 5.24120 5.29233 5.36261 5.50729 5.89352 6.19367 6.80626 7.04014 7.18596 7.64594 8.40991 8.94373 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.007080 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.533627 B = 3953.835327 C = 6113.130536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.439 3.561 4 O -0.534 6.534 5 C 0.109 3.891 6 N -0.462 5.462 7 C -0.354 4.354 8 H 0.069 0.931 9 C 0.000 4.000 10 N -0.832 5.832 11 Si 0.976 3.024 12 H -0.293 1.293 13 H -0.279 1.279 14 H -0.256 1.256 15 C 0.474 3.526 16 O -0.526 6.526 17 C -0.066 4.066 18 H 0.085 0.915 19 C -0.132 4.132 20 C -0.161 4.161 21 C 0.108 3.892 22 F -0.141 7.141 23 C -0.164 4.164 24 C -0.050 4.050 25 C -0.177 4.177 26 C 0.139 3.861 27 F -0.129 7.129 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.173 0.827 38 H 0.189 0.811 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -7.283 11.598 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.281 3.719 4 O -0.422 6.422 5 C -0.017 4.017 6 N -0.185 5.185 7 C -0.481 4.481 8 H 0.087 0.913 9 C -0.207 4.207 10 N -0.467 5.467 11 Si 0.801 3.199 12 H -0.220 1.220 13 H -0.205 1.205 14 H -0.180 1.180 15 C 0.262 3.738 16 O -0.401 6.401 17 C -0.088 4.088 18 H 0.103 0.897 19 C -0.189 4.189 20 C -0.163 4.163 21 C 0.088 3.912 22 F -0.120 7.120 23 C -0.183 4.183 24 C -0.067 4.067 25 C -0.196 4.196 26 C 0.119 3.881 27 F -0.107 7.107 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.190 0.810 38 H 0.206 0.794 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.821 -6.354 11.606 14.456 hybrid contribution -0.003 0.482 -1.459 1.536 sum -5.825 -5.872 10.148 13.092 Atomic orbital electron populations 1.23511 0.75418 1.05702 1.01921 1.86503 1.24603 1.32391 1.84006 1.25309 0.93722 0.81354 0.71469 1.90658 1.67653 1.37948 1.45942 1.21403 0.85786 0.87153 1.07344 1.43138 1.62540 1.07599 1.05263 1.19149 1.06836 1.31535 0.90620 0.91307 1.26149 0.95359 0.98868 1.00358 1.70316 1.15296 1.31741 1.29310 0.85216 0.77172 0.78030 0.79468 1.21988 1.20477 1.18023 1.20245 0.81458 0.87499 0.84614 1.90506 1.46246 1.17129 1.86206 1.20116 1.01029 0.96072 0.91596 0.89723 1.21755 0.95036 0.99256 1.02833 1.19681 0.95526 1.01001 1.00097 1.17527 0.85638 0.90350 0.97651 1.91447 1.63231 1.63891 1.93414 1.21477 1.03163 0.95602 0.98047 1.21284 0.90111 0.96900 0.98438 1.21564 1.01627 0.99908 0.96477 1.17633 0.83144 0.96014 0.91291 1.91562 1.47053 1.95354 1.76758 0.92692 0.92748 0.84167 0.84944 0.85561 0.93755 0.89439 0.91075 0.92997 0.80972 0.79430 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.86 16 2 O -0.36 -11.11 10.56 -51.38 -0.54 -11.65 16 3 C 0.44 17.31 7.52 71.24 0.54 17.85 16 4 O -0.53 -25.69 16.15 21.98 0.35 -25.34 16 5 C 0.11 4.31 5.53 85.63 0.47 4.78 16 6 N -0.46 -24.00 2.07 -639.58 -1.33 -25.32 16 7 C -0.35 -20.21 9.24 84.04 0.78 -19.44 16 8 H 0.07 3.93 7.84 -2.91 -0.02 3.90 16 9 C 0.00 0.00 5.07 84.93 0.43 0.43 16 10 N -0.83 -50.31 10.22 21.66 0.22 -50.09 16 11 Si 0.98 45.82 29.56 68.60 2.03 47.85 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 C 0.47 25.31 5.76 87.66 0.51 25.81 16 16 O -0.53 -32.52 10.74 -3.05 -0.03 -32.55 16 17 C -0.07 -2.80 1.94 -12.29 -0.02 -2.82 16 18 H 0.08 3.42 5.76 -2.39 -0.01 3.40 16 19 C -0.13 -4.75 8.70 71.98 0.63 -4.12 16 20 C -0.16 -6.43 4.59 -19.78 -0.09 -6.52 16 21 C 0.11 3.65 7.25 22.37 0.16 3.82 16 22 F -0.14 -4.89 16.19 44.97 0.73 -4.16 16 23 C -0.16 -4.07 10.02 22.32 0.22 -3.85 16 24 C -0.05 -1.09 10.04 22.25 0.22 -0.87 16 25 C -0.18 -5.19 10.03 22.32 0.22 -4.96 16 26 C 0.14 5.52 6.10 22.37 0.14 5.66 16 27 F -0.13 -6.13 13.19 44.97 0.59 -5.54 16 28 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 29 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.13 4.64 8.02 -2.38 -0.02 4.62 16 32 H 0.13 4.21 4.92 -2.39 -0.01 4.19 16 33 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.44 6.50 -2.39 -0.02 2.42 16 36 H 0.05 2.10 6.16 -2.38 -0.01 2.08 16 37 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -82.69 336.57 8.53 -74.16 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.10 Total: 15.01 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 5.40 Total: 17.63 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.11 Total: -75.41 kcal Atomic # 8 Polarization: -69.32 SS G_CDS: -0.22 Total: -69.54 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 1.32 Total: -9.70 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -82.69 8.53 -74.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123628974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.270 kcal (2) G-P(sol) polarization free energy of solvation -82.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds