Wall clock time and date at job start Tue Mar 31 2020 15:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09008 * 109.47017 * 55.00082 * 5 4 2 7 7 O 1.42903 * 109.47386 * 295.00486 * 5 4 2 8 8 C 1.50698 * 109.47721 * 175.00208 * 5 4 2 9 9 C 1.38247 * 119.97578 * 84.71943 * 8 5 4 10 10 C 1.38193 * 120.02783 * 179.73229 * 9 8 5 11 11 C 1.38465 * 119.97231 * 0.52599 * 10 9 8 12 12 F 1.35096 * 120.02531 * 179.72432 * 11 10 9 13 13 C 1.38459 * 119.94978 * 359.75281 * 11 10 9 14 14 C 1.38200 * 119.97101 * 359.97438 * 13 11 10 15 15 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 16 16 C 1.34777 * 119.99688 * 274.99602 * 15 2 1 17 17 O 1.21279 * 119.99974 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99799 * 180.02562 * 16 15 2 19 19 S 1.81003 * 109.46963 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99954 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00128 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00019 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99972 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46817 * 90.00328 * 24 22 20 26 26 H 1.48492 * 109.47123 * 210.00747 * 24 22 20 27 27 H 1.48503 * 109.46796 * 330.00445 * 24 22 20 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 0.96705 * 113.99520 * 300.00083 * 7 5 4 34 34 H 1.08005 * 119.98262 * 359.97438 * 9 8 5 35 35 H 1.07997 * 120.01856 * 180.26119 * 10 9 8 36 36 H 1.07996 * 120.01332 * 179.97438 * 13 11 10 37 37 H 1.08003 * 119.98686 * 179.97438 * 14 13 11 38 38 H 0.96993 * 119.99992 * 94.99462 * 15 2 1 39 39 H 1.08995 * 109.47366 * 299.99979 * 18 16 15 40 40 H 1.08996 * 109.47113 * 60.00496 * 18 16 15 41 41 H 0.97003 * 119.99777 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9954 -0.9924 -0.3869 7 8 3.9385 0.7549 -1.4880 8 6 4.0773 -1.4259 -2.4748 9 6 4.1115 -0.8745 -3.7421 10 6 4.5865 -1.6167 -4.8067 11 6 5.0181 -2.9169 -4.6055 12 9 5.4774 -3.6453 -5.6464 13 6 4.9780 -3.4701 -3.3369 14 6 4.5079 -2.7239 -2.2729 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0184 2.3571 17 8 1.8583 1.1582 2.4117 18 6 2.6500 -0.7288 3.5874 19 16 2.7116 0.4344 4.9728 20 6 3.3160 -0.6306 6.2398 21 1 3.5259 -1.6668 6.0196 22 6 3.5224 -0.1377 7.5208 23 7 3.9744 -0.9332 8.4672 24 14 3.1600 1.6549 7.9015 25 1 1.7492 1.7914 8.3445 26 1 4.0654 2.1246 8.9807 27 1 3.3773 2.4737 6.6818 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.5895 1.1582 -2.2947 34 1 3.7705 0.1382 -3.8995 35 1 4.6171 -1.1843 -5.7958 36 1 5.3140 -4.4842 -3.1789 37 1 4.4761 -3.1553 -1.2833 38 1 2.2490 -1.6319 1.1525 39 1 1.9778 -1.5510 3.8325 40 1 3.6493 -1.1205 3.3978 41 1 4.1189 -0.5886 9.3623 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134444275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:34 Heat of formation + Delta-G solvation = -145.305025 kcal Electronic energy + Delta-G solvation = -24451.920526 eV Core-core repulsion = 20563.935797 eV Total energy + Delta-G solvation = -3887.984729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91829 -41.05408 -40.34194 -38.18709 -36.40765 -34.66457 -33.17347 -32.29624 -31.97901 -30.10820 -29.02193 -27.83819 -25.10464 -24.02744 -22.70181 -22.07719 -21.52703 -19.90013 -18.89546 -18.09273 -17.93339 -17.47026 -17.16656 -16.92911 -16.63764 -16.57106 -16.19301 -15.98137 -15.49448 -15.37183 -14.97068 -14.73263 -14.50690 -14.27963 -14.09596 -14.01273 -13.74239 -13.46734 -13.33705 -13.20726 -13.01055 -12.84612 -12.71630 -12.55745 -12.24455 -11.93317 -11.86425 -11.74319 -11.16422 -11.05495 -10.90631 -10.51443 -10.10674 -10.08130 -9.54869 -8.97904 -8.50931 -6.21083 0.08999 0.26049 1.01189 1.31609 1.48018 1.57847 1.64324 2.24808 2.31307 2.54724 2.74303 2.87369 3.26006 3.41803 3.56454 3.75790 3.89431 3.89840 3.99581 4.13146 4.17561 4.25972 4.31565 4.39151 4.48882 4.54902 4.55797 4.82936 4.84861 4.93107 4.97525 5.04084 5.15227 5.18266 5.24430 5.34765 5.50166 5.60229 5.71510 5.88972 6.12120 6.54610 6.83707 6.94579 7.28595 8.61400 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.002322 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.817220 B =12057.783001 C =12808.171330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.070 0.930 4 C -0.140 4.140 5 C 0.150 3.850 6 H 0.099 0.901 7 O -0.569 6.569 8 C -0.126 4.126 9 C -0.084 4.084 10 C -0.154 4.154 11 C 0.073 3.927 12 F -0.152 7.152 13 C -0.158 4.158 14 C -0.086 4.086 15 N -0.708 5.708 16 C 0.536 3.464 17 O -0.562 6.562 18 C -0.112 4.112 19 S -0.178 6.178 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.237 1.237 28 H 0.031 0.969 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.387 0.613 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.414 0.586 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -3.936 -30.592 30.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.088 0.912 4 C -0.178 4.178 5 C 0.091 3.909 6 H 0.117 0.883 7 O -0.377 6.377 8 C -0.127 4.127 9 C -0.101 4.101 10 C -0.173 4.173 11 C 0.054 3.946 12 F -0.131 7.131 13 C -0.176 4.176 14 C -0.104 4.104 15 N -0.362 5.362 16 C 0.321 3.679 17 O -0.440 6.440 18 C -0.263 4.263 19 S 0.048 5.952 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.161 1.161 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.237 0.763 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.251 0.749 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.178 -2.162 -29.833 30.080 hybrid contribution 0.427 -1.585 0.027 1.642 sum -2.750 -3.747 -29.806 30.166 Atomic orbital electron populations 1.22153 0.94660 1.02878 1.02152 1.20982 0.94179 0.97263 0.83514 0.91158 1.22553 0.94506 1.03283 0.97446 1.20799 0.93922 0.80837 0.95349 0.88312 1.86726 1.77758 1.24844 1.48416 1.20718 1.00582 0.95506 0.95873 1.21028 0.97540 1.00786 0.90796 1.21351 1.01461 0.92715 1.01781 1.18083 1.00772 0.91228 0.84561 1.91476 1.86823 1.77525 1.57251 1.21360 1.02832 1.02206 0.91225 1.21129 0.96315 0.93348 0.99647 1.45854 1.67374 1.14451 1.08491 1.19898 0.76801 0.86568 0.84587 1.90686 1.50687 1.17512 1.85108 1.23288 1.06089 1.02215 0.94701 1.84743 1.86887 1.18597 1.04958 1.22464 1.50148 0.98201 0.96650 0.91913 1.25566 0.93315 1.02222 0.94975 1.70016 1.44626 1.37692 1.03199 0.85869 0.79529 0.80483 0.80509 1.18687 1.18403 1.16132 0.95003 0.89689 0.90990 0.88153 0.87434 0.76298 0.82594 0.83212 0.83606 0.83135 0.74899 0.86904 0.86978 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.48 71.98 0.68 -2.00 16 2 C 0.14 2.55 2.53 44.99 0.11 2.67 16 3 H 0.07 1.69 7.13 -2.39 -0.02 1.67 16 4 C -0.14 -1.30 4.41 30.59 0.14 -1.17 16 5 C 0.15 1.88 3.15 29.85 0.09 1.98 16 6 H 0.10 1.51 7.53 -2.38 -0.02 1.49 16 7 O -0.57 -9.19 12.59 -148.98 -1.88 -11.06 16 8 C -0.13 -1.43 5.00 -19.86 -0.10 -1.53 16 9 C -0.08 -0.80 9.32 22.26 0.21 -0.59 16 10 C -0.15 -1.80 10.03 22.31 0.22 -1.57 16 11 C 0.07 1.09 7.30 22.38 0.16 1.25 16 12 F -0.15 -2.69 17.27 44.97 0.78 -1.91 16 13 C -0.16 -2.06 10.03 22.31 0.22 -1.83 16 14 C -0.09 -0.99 9.68 22.26 0.22 -0.78 16 15 N -0.71 -14.97 4.45 -442.53 -1.97 -16.94 16 16 C 0.54 17.82 7.81 87.66 0.68 18.50 16 17 O -0.56 -23.73 15.52 -3.03 -0.05 -23.78 16 18 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 19 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 20 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.04 2.62 5.50 84.86 0.47 3.09 16 23 N -0.92 -55.95 13.97 21.65 0.30 -55.64 16 24 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 28 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.39 2.91 7.39 -74.05 -0.55 2.37 16 34 H 0.16 0.61 6.62 -2.91 -0.02 0.59 16 35 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.41 5.89 8.60 -92.71 -0.80 5.09 16 39 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 40 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -79.14 366.27 1.96 -77.18 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -0.32 Total: 10.73 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 4.23 Total: -15.65 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.67 Total: -72.59 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.92 Total: -34.84 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -79.14 1.96 -77.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134444275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.124 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds