Wall clock time and date at job start Tue Mar 31 2020 15:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 H 1.08996 * 109.46875 * 304.99826 * 5 4 2 7 7 O 1.42901 * 109.47207 * 64.99805 * 5 4 2 8 8 C 1.50702 * 109.46806 * 184.99728 * 5 4 2 9 9 C 1.38247 * 119.97333 * 279.72385 * 8 5 4 10 10 C 1.38202 * 120.02050 * 179.76934 * 9 8 5 11 11 C 1.38456 * 119.97553 * 0.50884 * 10 9 8 12 12 F 1.35105 * 120.02592 * 179.76847 * 11 10 9 13 13 C 1.38451 * 119.94912 * 359.74618 * 11 10 9 14 14 C 1.38199 * 119.97644 * 359.97438 * 13 11 10 15 15 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 16 16 C 1.34784 * 120.00075 * 85.00024 * 15 2 1 17 17 O 1.21280 * 119.99396 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00292 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.47078 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00195 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99657 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00356 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99782 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00178 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47301 * 60.00232 * 24 22 20 26 26 H 1.48507 * 109.47232 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47218 * 299.99922 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 32 32 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 33 33 H 0.96703 * 113.99612 * 59.99833 * 7 5 4 34 34 H 1.08000 * 119.98952 * 0.02562 * 9 8 5 35 35 H 1.08001 * 120.00635 * 180.25723 * 10 9 8 36 36 H 1.08001 * 120.01388 * 179.97438 * 13 11 10 37 37 H 1.08008 * 119.98963 * 180.02562 * 14 13 11 38 38 H 0.96996 * 120.00792 * 265.00493 * 15 2 1 39 39 H 1.08994 * 109.47030 * 299.99967 * 18 16 15 40 40 H 1.08993 * 109.47006 * 59.99994 * 18 16 15 41 41 H 0.97001 * 120.00091 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 1 3.9954 -0.9923 0.3868 7 8 3.9386 0.7548 1.4880 8 6 4.0773 -1.4260 2.4748 9 6 4.0262 -0.9087 3.7558 10 6 4.4915 -1.6549 4.8219 11 6 5.0186 -2.9168 4.6053 12 9 5.4781 -3.6453 5.6462 13 6 5.0741 -3.4316 3.3213 14 6 4.6030 -2.6859 2.2574 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3572 17 8 1.8590 1.1585 -2.4115 18 6 2.6488 -0.7290 -3.5877 19 16 2.7091 0.4339 -4.9735 20 6 3.3125 -0.6313 -6.2408 21 1 3.5218 -1.6677 -6.0207 22 6 3.5177 -0.1387 -7.5220 23 7 3.2620 1.1244 -7.7903 24 14 4.1566 -1.2681 -8.8657 25 1 3.2058 -2.3918 -9.0615 26 1 4.2891 -0.5047 -10.1326 27 1 5.4836 -1.8055 -8.4712 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6055 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2057 33 1 3.5896 1.1581 2.2947 34 1 3.6187 0.0773 3.9240 35 1 4.4477 -1.2523 5.8231 36 1 5.4855 -4.4156 3.1511 37 1 4.6458 -3.0875 1.2557 38 1 2.2490 -1.6318 -1.1526 39 1 3.6479 -1.1215 -3.3986 40 1 1.9760 -1.5507 -3.8325 41 1 3.4058 1.4688 -8.6857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134444295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:37 Heat of formation + Delta-G solvation = -145.879352 kcal Electronic energy + Delta-G solvation = -24403.397373 eV Core-core repulsion = 20515.387740 eV Total energy + Delta-G solvation = -3888.009634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91544 -41.02995 -40.31810 -38.18041 -36.38822 -34.57190 -33.14295 -32.27922 -31.99155 -30.04545 -29.01632 -27.64270 -25.10380 -24.03586 -22.66316 -22.06276 -21.50549 -19.84205 -18.87895 -18.07768 -17.89815 -17.45653 -17.00508 -16.86414 -16.62874 -16.55661 -16.16724 -16.01518 -15.53696 -15.36843 -14.74576 -14.58358 -14.47697 -14.24264 -14.06972 -13.99819 -13.72150 -13.43737 -13.17414 -13.14622 -12.86072 -12.81523 -12.71210 -12.57715 -12.24808 -11.93374 -11.78788 -11.68759 -11.11789 -11.04151 -10.85293 -10.25404 -10.08513 -10.07472 -9.55614 -8.64818 -8.33179 -6.11074 0.08954 0.26167 1.28815 1.44503 1.48363 1.58347 1.69598 2.28140 2.36573 2.54773 3.00675 3.26041 3.34449 3.42083 3.58468 3.75283 3.89821 3.95851 4.02239 4.14778 4.18324 4.31051 4.33378 4.39612 4.52747 4.55256 4.56046 4.82893 4.84761 4.93537 4.97493 5.04038 5.15203 5.19066 5.24322 5.34558 5.42568 5.50955 5.62577 5.89028 6.20782 6.58903 6.84092 7.07841 7.34298 8.75768 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.002308 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.168405 B =12130.424117 C =13184.183878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.067 0.933 4 C -0.139 4.139 5 C 0.150 3.850 6 H 0.098 0.902 7 O -0.570 6.570 8 C -0.126 4.126 9 C -0.083 4.083 10 C -0.154 4.154 11 C 0.073 3.927 12 F -0.152 7.152 13 C -0.157 4.157 14 C -0.086 4.086 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.130 4.130 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.387 0.613 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.414 0.586 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -10.848 27.887 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.177 4.177 5 C 0.091 3.909 6 H 0.116 0.884 7 O -0.378 6.378 8 C -0.127 4.127 9 C -0.101 4.101 10 C -0.173 4.173 11 C 0.054 3.946 12 F -0.130 7.130 13 C -0.176 4.176 14 C -0.104 4.104 15 N -0.362 5.362 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.281 4.281 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.187 1.187 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.237 0.763 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.250 0.750 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.820 -8.894 27.193 28.622 hybrid contribution 0.642 -2.071 -0.230 2.180 sum -0.178 -10.965 26.963 29.108 Atomic orbital electron populations 1.22152 0.94737 1.02875 1.02056 1.20968 0.94153 0.97207 0.83690 0.91463 1.22549 0.94549 1.03243 0.97362 1.20804 0.93931 0.80828 0.95363 0.88406 1.86730 1.77769 1.24907 1.48405 1.20704 1.00354 0.95858 0.95766 1.21034 0.97807 1.00528 0.90722 1.21351 1.01016 0.93154 1.01763 1.18074 1.00443 0.91636 0.84413 1.91479 1.86911 1.77358 1.57299 1.21355 1.02945 1.02295 0.91010 1.21138 0.96023 0.93481 0.99754 1.45855 1.67551 1.14365 1.08476 1.20011 0.76691 0.86567 0.84703 1.90688 1.50642 1.17799 1.85161 1.23381 1.05434 1.03138 0.96162 1.85601 1.86684 1.17505 1.02880 1.23170 1.50913 0.98464 0.96814 0.89899 1.26140 0.95125 0.97215 1.00791 1.70185 1.46843 1.15513 1.22274 0.85005 0.79085 0.77746 0.76167 1.18596 1.20470 1.18668 0.95241 0.89660 0.90884 0.87408 0.88107 0.76322 0.82585 0.83170 0.83554 0.83208 0.74953 0.87379 0.87297 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.48 71.98 0.68 -2.28 16 2 C 0.14 2.81 2.53 44.99 0.11 2.93 16 3 H 0.07 1.78 7.13 -2.39 -0.02 1.76 16 4 C -0.14 -1.46 4.41 30.60 0.13 -1.33 16 5 C 0.15 2.04 3.15 29.85 0.09 2.14 16 6 H 0.10 1.60 7.48 -2.39 -0.02 1.58 16 7 O -0.57 -10.04 12.64 -148.98 -1.88 -11.92 16 8 C -0.13 -1.50 4.97 -19.86 -0.10 -1.60 16 9 C -0.08 -0.83 9.32 22.26 0.21 -0.62 16 10 C -0.15 -1.82 10.03 22.31 0.22 -1.60 16 11 C 0.07 1.11 7.30 22.37 0.16 1.27 16 12 F -0.15 -2.68 17.27 44.97 0.78 -1.91 16 13 C -0.16 -2.08 10.03 22.31 0.22 -1.85 16 14 C -0.09 -1.03 9.67 22.26 0.22 -0.81 16 15 N -0.71 -16.40 4.45 -442.53 -1.97 -18.37 16 16 C 0.53 19.35 7.81 87.66 0.68 20.03 16 17 O -0.56 -26.17 15.52 -3.03 -0.05 -26.22 16 18 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 19 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 20 C -0.55 -31.21 9.50 67.95 0.65 -30.56 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 24 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.39 3.44 7.49 -74.06 -0.55 2.88 16 34 H 0.16 0.67 6.77 -2.91 -0.02 0.65 16 35 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.15 1.28 8.04 -2.91 -0.02 1.25 16 38 H 0.41 6.49 8.60 -92.71 -0.80 5.70 16 39 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 40 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -82.18 369.14 1.94 -80.24 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.29 Total: 16.15 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.20 Total: -17.79 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.68 Total: -74.45 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.93 Total: -38.13 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -82.18 1.94 -80.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134444295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.641 kcal (2) G-P(sol) polarization free energy of solvation -82.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds