Wall clock time and date at job start Tue Mar 31 2020 15:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00772 * 2 1 4 4 O 1.20835 * 119.99552 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00664 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47515 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99898 * 263.99425 * 6 5 3 8 8 H 1.08000 * 119.99769 * 197.00687 * 7 6 5 9 9 C 1.38948 * 120.00215 * 17.00550 * 7 6 5 10 10 N 1.31410 * 119.99778 * 21.25652 * 9 7 6 11 11 Si 1.86798 * 119.99937 * 201.26438 * 9 7 6 12 12 H 1.48491 * 109.47382 * 89.99886 * 11 9 7 13 13 H 1.48503 * 109.46913 * 209.99980 * 11 9 7 14 14 H 1.48502 * 109.46958 * 329.99630 * 11 9 7 15 15 C 1.34776 * 120.00111 * 83.98532 * 6 5 3 16 16 O 1.21295 * 119.99905 * 0.02562 * 15 6 5 17 17 C 1.50696 * 120.00118 * 179.97438 * 15 6 5 18 18 C 1.53003 * 109.47222 * 180.02562 * 17 15 6 19 19 C 1.50698 * 109.47018 * 180.02562 * 18 17 15 20 20 C 1.38230 * 119.98766 * 265.23021 * 19 18 17 21 21 C 1.38186 * 120.05336 * 180.23436 * 20 19 18 22 22 C 1.38501 * 120.02215 * 359.79107 * 21 20 19 23 23 F 1.35100 * 120.00915 * 180.02562 * 22 21 20 24 24 C 1.38388 * 119.97276 * 359.97438 * 22 21 20 25 25 C 1.38438 * 119.95582 * 0.02562 * 24 22 21 26 26 F 1.35105 * 120.01599 * 179.97438 * 25 24 22 27 27 H 1.09003 * 109.46908 * 59.99786 * 1 2 3 28 28 H 1.08995 * 109.47875 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46992 * 300.00312 * 1 2 3 30 30 H 1.09002 * 109.46932 * 59.99444 * 5 3 2 31 31 H 1.09006 * 109.46586 * 300.00102 * 5 3 2 32 32 H 0.97001 * 119.99528 * 179.97438 * 10 9 7 33 33 H 1.09007 * 109.46890 * 60.00926 * 17 15 6 34 34 H 1.08993 * 109.47468 * 300.00770 * 17 15 6 35 35 H 1.08994 * 109.46726 * 60.00320 * 18 17 15 36 36 H 1.09000 * 109.46907 * 300.00566 * 18 17 15 37 37 H 1.08005 * 119.97689 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.99017 * 179.77144 * 21 20 19 39 39 H 1.08002 * 120.02301 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 0.0002 7 6 4.2950 3.3023 -1.1804 8 1 4.8542 4.2263 -1.1717 9 6 3.8928 2.7450 -2.3880 10 7 2.8931 1.8926 -2.4176 11 14 4.7734 3.2071 -3.9692 12 1 5.9033 2.2712 -4.1982 13 1 3.8232 3.1240 -5.1074 14 1 5.2937 4.5937 -3.8589 15 6 4.0563 3.3597 1.1613 16 8 3.7796 2.8085 2.2058 17 6 4.4842 4.8046 1.1621 18 6 4.4850 5.3355 2.5971 19 6 4.9124 6.7806 2.5978 20 6 6.2363 7.1094 2.8210 21 6 6.6288 8.4343 2.8268 22 6 5.6966 9.4342 2.6045 23 9 6.0807 10.7294 2.6097 24 6 4.3718 9.1059 2.3761 25 6 3.9797 7.7782 2.3706 26 9 2.6865 7.4563 2.1483 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9558 0.7807 -0.8908 31 1 3.9564 0.7803 0.8892 32 1 2.6121 1.5038 -3.2607 33 1 3.7901 5.3894 0.5585 34 1 5.4875 4.8866 0.7442 35 1 5.1793 4.7506 3.2004 36 1 3.4819 5.2533 3.0154 37 1 6.9639 6.3304 2.9953 38 1 7.6628 8.6903 3.0050 39 1 3.6442 9.8849 2.2023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153188658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:56 Heat of formation + Delta-G solvation = -180.676682 kcal Electronic energy + Delta-G solvation = -27771.627177 eV Core-core repulsion = 23315.895442 eV Total energy + Delta-G solvation = -4455.731735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.09004 -48.88528 -39.52191 -39.05818 -38.23269 -35.50565 -34.63254 -33.54330 -31.61175 -30.90858 -29.60336 -28.18149 -26.30597 -25.02761 -23.76672 -23.21944 -21.36747 -20.16474 -19.17385 -18.22132 -17.25604 -17.06820 -16.58960 -16.43882 -15.96458 -15.84137 -15.47700 -15.34292 -15.25547 -15.02751 -14.54380 -14.37563 -14.31633 -14.21326 -13.83741 -13.06388 -12.83576 -12.55157 -12.54619 -12.25636 -12.02559 -11.69029 -11.60169 -11.42390 -11.32754 -11.24427 -11.19053 -10.80323 -10.55352 -10.47338 -10.38693 -9.81129 -9.59171 -9.14191 -9.02998 -8.74484 -8.47164 -7.98954 -6.53935 -4.02789 0.89653 0.93991 3.05527 3.16366 3.18985 3.28859 3.47797 3.69570 3.82286 3.98956 4.06900 4.38404 4.50021 4.54006 4.72331 4.88662 4.98188 5.08347 5.55472 5.64951 5.70453 5.72093 5.76923 5.78714 5.86303 5.94140 5.95622 6.08927 6.11996 6.18702 6.29484 6.45992 6.57137 6.60518 6.65183 6.74403 7.31527 7.45733 7.57766 8.19793 8.94399 9.10922 9.33246 9.74048 10.53672 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.003545 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.108252 B = 7895.735953 C = 8977.920623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.498 6.498 5 C 0.157 3.843 6 N -0.429 5.429 7 C -0.337 4.337 8 H 0.105 0.895 9 C 0.038 3.962 10 N -0.867 5.867 11 Si 0.925 3.075 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.470 3.530 16 O -0.603 6.603 17 C -0.111 4.111 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.060 4.060 21 C -0.163 4.163 22 C 0.116 3.884 23 F -0.137 7.137 24 C -0.192 4.192 25 C 0.133 3.867 26 F -0.124 7.124 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.273 0.727 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 6.428 5.859 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.325 3.675 4 O -0.383 6.383 5 C 0.031 3.969 6 N -0.148 5.148 7 C -0.464 4.464 8 H 0.123 0.877 9 C -0.167 4.167 10 N -0.505 5.505 11 Si 0.752 3.248 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.260 3.740 16 O -0.490 6.490 17 C -0.151 4.151 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.078 4.078 21 C -0.182 4.182 22 C 0.097 3.903 23 F -0.115 7.115 24 C -0.211 4.211 25 C 0.114 3.886 26 F -0.102 7.102 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.555 6.391 6.186 9.993 hybrid contribution -0.279 0.581 -1.278 1.431 sum 4.276 6.972 4.908 9.538 Atomic orbital electron populations 1.22929 0.78730 1.01779 1.01645 1.86451 1.21670 1.35533 1.85726 1.23970 0.92308 0.80572 0.70661 1.90521 1.66483 1.36358 1.44929 1.20459 0.87216 0.85739 1.03485 1.43418 1.57077 1.08044 1.06242 1.19646 1.34484 1.10009 0.82239 0.87746 1.25226 0.94769 0.97087 0.99652 1.69853 1.22170 1.30527 1.27952 0.85953 0.79059 0.79138 0.80687 1.20132 1.21012 1.19378 1.20130 0.82009 0.88170 0.83661 1.90537 1.55842 1.70512 1.32089 1.21320 1.03002 0.94793 0.95988 1.20339 1.03512 0.88433 0.97939 1.20277 0.93276 0.96621 1.01275 1.20860 0.94774 0.95696 0.96468 1.21174 1.00034 0.92319 1.04629 1.17264 0.92478 0.78482 1.02119 1.91509 1.91592 1.34419 1.94002 1.20998 0.96208 0.96306 1.07623 1.17226 0.79200 0.92064 1.00125 1.91568 1.33770 1.93299 1.91599 0.92632 0.89621 0.93153 0.86041 0.90026 0.91676 0.89490 0.89850 0.89748 0.89967 0.83734 0.84193 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.17 10.56 -39.24 -0.41 -8.58 16 3 C 0.48 12.05 6.13 36.01 0.22 12.27 16 4 O -0.50 -13.97 15.76 -18.76 -0.30 -14.26 16 5 C 0.16 3.72 5.14 -5.20 -0.03 3.70 16 6 N -0.43 -10.56 2.18 -116.10 -0.25 -10.81 16 7 C -0.34 -8.23 9.14 -14.93 -0.14 -8.36 16 8 H 0.10 2.38 6.56 -52.49 -0.34 2.04 16 9 C 0.04 0.92 4.88 -17.47 -0.09 0.83 16 10 N -0.87 -22.25 9.27 55.50 0.51 -21.74 16 11 Si 0.93 18.93 29.60 -169.99 -5.03 13.89 16 12 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 C 0.47 11.08 7.42 -10.99 -0.08 11.00 16 16 O -0.60 -15.34 15.66 5.54 0.09 -15.25 16 17 C -0.11 -2.11 4.13 -27.88 -0.12 -2.23 16 18 C -0.06 -1.05 4.41 -27.88 -0.12 -1.17 16 19 C -0.11 -1.56 5.14 -104.55 -0.54 -2.09 16 20 C -0.06 -0.66 9.68 -39.60 -0.38 -1.04 16 21 C -0.16 -1.67 10.03 -39.50 -0.40 -2.06 16 22 C 0.12 1.34 7.30 -39.43 -0.29 1.05 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 24 C -0.19 -2.34 10.01 -39.45 -0.39 -2.74 16 25 C 0.13 1.89 7.24 -39.43 -0.29 1.60 16 26 F -0.12 -2.01 16.56 2.25 0.04 -1.97 16 27 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.12 2.85 6.39 -51.93 -0.33 2.52 16 31 H 0.08 1.80 7.61 -51.93 -0.40 1.41 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.09 1.75 8.10 -51.92 -0.42 1.33 16 34 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 35 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 36 H 0.08 1.49 7.75 -51.93 -0.40 1.08 16 37 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -31.07 348.36 -6.01 -37.08 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.38 Total: 5.35 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -1.57 Total: 12.59 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.26 Total: -32.55 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.62 Total: -38.10 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.07 -6.01 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153188658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.595 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds