Wall clock time and date at job start Tue Mar 31 2020 15:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00772 * 2 1 4 4 O 1.20835 * 119.99552 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00664 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47515 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99898 * 263.99425 * 6 5 3 8 8 H 1.08000 * 119.99769 * 197.00687 * 7 6 5 9 9 C 1.38948 * 120.00215 * 17.00550 * 7 6 5 10 10 N 1.31410 * 119.99778 * 21.25652 * 9 7 6 11 11 Si 1.86798 * 119.99937 * 201.26438 * 9 7 6 12 12 H 1.48491 * 109.47382 * 89.99886 * 11 9 7 13 13 H 1.48503 * 109.46913 * 209.99980 * 11 9 7 14 14 H 1.48502 * 109.46958 * 329.99630 * 11 9 7 15 15 C 1.34776 * 120.00111 * 83.98532 * 6 5 3 16 16 O 1.21295 * 119.99905 * 0.02562 * 15 6 5 17 17 C 1.50696 * 120.00118 * 179.97438 * 15 6 5 18 18 C 1.53003 * 109.47222 * 180.02562 * 17 15 6 19 19 C 1.50698 * 109.47018 * 180.02562 * 18 17 15 20 20 C 1.38230 * 119.98766 * 265.23021 * 19 18 17 21 21 C 1.38186 * 120.05336 * 180.23436 * 20 19 18 22 22 C 1.38501 * 120.02215 * 359.79107 * 21 20 19 23 23 F 1.35100 * 120.00915 * 180.02562 * 22 21 20 24 24 C 1.38388 * 119.97276 * 359.97438 * 22 21 20 25 25 C 1.38438 * 119.95582 * 0.02562 * 24 22 21 26 26 F 1.35105 * 120.01599 * 179.97438 * 25 24 22 27 27 H 1.09003 * 109.46908 * 59.99786 * 1 2 3 28 28 H 1.08995 * 109.47875 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46992 * 300.00312 * 1 2 3 30 30 H 1.09002 * 109.46932 * 59.99444 * 5 3 2 31 31 H 1.09006 * 109.46586 * 300.00102 * 5 3 2 32 32 H 0.97001 * 119.99528 * 179.97438 * 10 9 7 33 33 H 1.09007 * 109.46890 * 60.00926 * 17 15 6 34 34 H 1.08993 * 109.47468 * 300.00770 * 17 15 6 35 35 H 1.08994 * 109.46726 * 60.00320 * 18 17 15 36 36 H 1.09000 * 109.46907 * 300.00566 * 18 17 15 37 37 H 1.08005 * 119.97689 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.99017 * 179.77144 * 21 20 19 39 39 H 1.08002 * 120.02301 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 0.0002 7 6 4.2950 3.3023 -1.1804 8 1 4.8542 4.2263 -1.1717 9 6 3.8928 2.7450 -2.3880 10 7 2.8931 1.8926 -2.4176 11 14 4.7734 3.2071 -3.9692 12 1 5.9033 2.2712 -4.1982 13 1 3.8232 3.1240 -5.1074 14 1 5.2937 4.5937 -3.8589 15 6 4.0563 3.3597 1.1613 16 8 3.7796 2.8085 2.2058 17 6 4.4842 4.8046 1.1621 18 6 4.4850 5.3355 2.5971 19 6 4.9124 6.7806 2.5978 20 6 6.2363 7.1094 2.8210 21 6 6.6288 8.4343 2.8268 22 6 5.6966 9.4342 2.6045 23 9 6.0807 10.7294 2.6097 24 6 4.3718 9.1059 2.3761 25 6 3.9797 7.7782 2.3706 26 9 2.6865 7.4563 2.1483 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9558 0.7807 -0.8908 31 1 3.9564 0.7803 0.8892 32 1 2.6121 1.5038 -3.2607 33 1 3.7901 5.3894 0.5585 34 1 5.4875 4.8866 0.7442 35 1 5.1793 4.7506 3.2004 36 1 3.4819 5.2533 3.0154 37 1 6.9639 6.3304 2.9953 38 1 7.6628 8.6903 3.0050 39 1 3.6442 9.8849 2.2023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153188658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:55 Heat of formation + Delta-G solvation = -196.875303 kcal Electronic energy + Delta-G solvation = -27772.329602 eV Core-core repulsion = 23315.895442 eV Total energy + Delta-G solvation = -4456.434160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03433 -49.98946 -41.36216 -40.36021 -39.76072 -37.34016 -36.54187 -34.85456 -33.49651 -31.84334 -31.06505 -29.69903 -27.88428 -26.77270 -25.17109 -24.16289 -22.59711 -21.87484 -21.00725 -19.20045 -18.84537 -18.47912 -18.25355 -18.15774 -17.29645 -17.04010 -16.97029 -16.80452 -16.39016 -16.32691 -16.10358 -15.99797 -15.87557 -15.39197 -14.83026 -14.56613 -14.40390 -14.25707 -13.87664 -13.64834 -13.46916 -13.30412 -13.09719 -12.87384 -12.70127 -12.61485 -12.51772 -12.35477 -12.25676 -12.04533 -11.88769 -11.58735 -11.51443 -10.94070 -10.51041 -10.05339 -9.88866 -9.58524 -8.38589 -5.93707 -0.07155 0.02773 1.42155 1.50194 1.60688 1.68856 1.79493 2.23818 2.33352 2.36687 2.86728 2.88584 3.12116 3.43437 3.61459 3.65886 3.91745 4.12052 4.20088 4.25627 4.32257 4.34499 4.36872 4.39847 4.54765 4.68130 4.70403 4.75826 4.85073 4.87902 4.96576 5.00508 5.08375 5.22477 5.36330 5.45178 5.62715 5.72875 5.78840 6.32241 7.06886 7.20598 7.47997 7.88665 8.69051 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.003545 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.108252 B = 7895.735953 C = 8977.920623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.539 6.539 5 C 0.153 3.847 6 N -0.441 5.441 7 C -0.352 4.352 8 H 0.118 0.882 9 C -0.005 4.005 10 N -0.897 5.897 11 Si 0.995 3.005 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.259 1.259 15 C 0.457 3.543 16 O -0.629 6.629 17 C -0.101 4.101 18 C -0.053 4.053 19 C -0.125 4.125 20 C -0.050 4.050 21 C -0.147 4.147 22 C 0.115 3.885 23 F -0.136 7.136 24 C -0.193 4.193 25 C 0.108 3.892 26 F -0.146 7.146 27 H 0.044 0.956 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.271 0.729 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 7.195 5.642 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.427 6.427 5 C 0.028 3.972 6 N -0.159 5.159 7 C -0.479 4.479 8 H 0.135 0.865 9 C -0.206 4.206 10 N -0.536 5.536 11 Si 0.818 3.182 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.248 3.752 16 O -0.517 6.517 17 C -0.141 4.141 18 C -0.091 4.091 19 C -0.127 4.127 20 C -0.068 4.068 21 C -0.165 4.165 22 C 0.095 3.905 23 F -0.114 7.114 24 C -0.212 4.212 25 C 0.088 3.912 26 F -0.124 7.124 27 H 0.063 0.937 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.190 0.810 38 H 0.192 0.808 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.777 7.146 5.978 11.521 hybrid contribution -1.024 0.317 -1.161 1.580 sum 5.753 7.463 4.817 10.583 Atomic orbital electron populations 1.23289 0.76265 1.04878 1.01112 1.86420 1.24062 1.33813 1.85029 1.24180 0.92785 0.80749 0.69512 1.90490 1.67418 1.37772 1.47036 1.20532 0.86867 0.86041 1.03801 1.43685 1.57099 1.08398 1.06762 1.20057 1.34732 1.10700 0.82419 0.86464 1.26113 0.94986 0.96965 1.02577 1.69966 1.23404 1.31737 1.28475 0.84897 0.77701 0.79404 0.76154 1.19082 1.21975 1.18313 1.20949 0.81419 0.89756 0.83060 1.90501 1.56877 1.71504 1.32861 1.21279 1.03545 0.91410 0.97841 1.20136 1.02354 0.90539 0.96027 1.20134 0.94603 0.94751 1.03167 1.21139 0.93777 0.96909 0.94975 1.21516 1.01297 0.91357 1.02368 1.17404 0.92392 0.78852 1.01832 1.91518 1.91488 1.34454 1.93954 1.21091 0.97126 0.95704 1.07302 1.17503 0.78588 0.93167 1.01912 1.91510 1.35289 1.93551 1.92075 0.93718 0.84677 0.93199 0.86109 0.88993 0.91892 0.91092 0.87420 0.88706 0.92823 0.80974 0.80845 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.39 10.56 -51.36 -0.54 -16.93 16 3 C 0.48 24.67 6.13 71.24 0.44 25.11 16 4 O -0.54 -31.18 15.76 21.94 0.35 -30.83 16 5 C 0.15 7.43 5.14 85.63 0.44 7.87 16 6 N -0.44 -22.00 2.18 -639.61 -1.39 -23.39 16 7 C -0.35 -17.20 9.14 84.04 0.77 -16.43 16 8 H 0.12 5.26 6.56 -2.91 -0.02 5.24 16 9 C 0.00 -0.22 4.88 84.93 0.41 0.19 16 10 N -0.90 -46.57 9.27 21.66 0.20 -46.37 16 11 Si 0.99 38.27 29.60 68.60 2.03 40.30 16 12 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 13 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 15 C 0.46 21.87 7.42 87.66 0.65 22.52 16 16 O -0.63 -32.71 15.66 -3.08 -0.05 -32.75 16 17 C -0.10 -3.85 4.13 29.85 0.12 -3.72 16 18 C -0.05 -1.72 4.41 29.85 0.13 -1.59 16 19 C -0.13 -3.31 5.14 -19.82 -0.10 -3.41 16 20 C -0.05 -0.95 9.68 22.26 0.22 -0.73 16 21 C -0.15 -2.45 10.03 22.32 0.22 -2.23 16 22 C 0.11 2.35 7.30 22.37 0.16 2.51 16 23 F -0.14 -2.79 17.27 44.97 0.78 -2.01 16 24 C -0.19 -4.50 10.01 22.35 0.22 -4.27 16 25 C 0.11 3.04 7.24 22.37 0.16 3.20 16 26 F -0.15 -4.94 16.56 44.97 0.74 -4.19 16 27 H 0.04 1.63 8.13 -2.39 -0.02 1.62 16 28 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 30 H 0.12 5.79 6.39 -2.39 -0.02 5.77 16 31 H 0.09 4.15 7.61 -2.38 -0.02 4.13 16 32 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 33 H 0.07 2.93 8.10 -2.38 -0.02 2.91 16 34 H 0.11 3.52 7.69 -2.39 -0.02 3.50 16 35 H 0.09 2.83 8.01 -2.39 -0.02 2.81 16 36 H 0.05 2.03 7.75 -2.39 -0.02 2.01 16 37 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 38 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -68.82 348.36 8.26 -60.57 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.09 Total: 24.09 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 5.05 Total: 31.52 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.19 Total: -69.76 kcal Atomic # 8 Polarization: -80.27 SS G_CDS: -0.25 Total: -80.51 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 1.52 Total: -6.20 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -68.82 8.26 -60.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153188658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.308 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds