Wall clock time and date at job start Tue Mar 31 2020 15:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76194 * 103.00047 * 2 1 4 4 C 1.39048 * 120.04473 * 0.02637 * 3 2 1 5 5 C 1.38114 * 120.06573 * 180.02562 * 4 3 2 6 6 C 1.38202 * 120.14850 * 359.67006 * 5 4 3 7 7 C 1.38940 * 120.08523 * 0.60232 * 6 5 4 8 8 N 1.39850 * 120.02730 * 179.69297 * 7 6 5 9 9 C 1.46500 * 119.99727 * 187.69032 * 8 7 6 10 10 C 1.34774 * 120.00481 * 7.69577 * 8 7 6 11 11 O 1.21559 * 119.99615 * 9.24606 * 10 8 7 12 12 C 1.47848 * 120.00473 * 189.24524 * 10 8 7 13 13 C 1.39936 * 120.02439 * 321.00854 * 12 10 8 14 14 C 1.38332 * 120.35462 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.41314 * 0.04754 * 14 13 12 16 16 C 1.40751 * 120.04368 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17723 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00205 * 325.64945 * 17 16 15 19 19 C 1.39938 * 119.99725 * 145.64101 * 17 16 15 20 20 N 1.30826 * 119.99919 * 3.54638 * 19 17 16 21 21 Si 1.86801 * 119.99825 * 183.54410 * 19 17 16 22 22 H 1.48505 * 109.47084 * 90.00375 * 21 19 17 23 23 H 1.48499 * 109.46947 * 210.00392 * 21 19 17 24 24 H 1.48502 * 109.47048 * 329.99986 * 21 19 17 25 25 C 1.39011 * 120.02868 * 141.04671 * 12 10 8 26 26 C 1.38750 * 119.93688 * 359.42675 * 7 6 5 27 27 H 1.09006 * 109.47162 * 59.99725 * 1 2 3 28 28 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47509 * 299.99625 * 1 2 3 30 30 H 1.07997 * 119.96792 * 359.96811 * 4 3 2 31 31 H 1.08000 * 119.92598 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.95533 * 180.32035 * 6 5 4 33 33 H 1.08995 * 109.47481 * 264.62949 * 9 8 7 34 34 H 1.09000 * 109.47287 * 24.63389 * 9 8 7 35 35 H 1.09005 * 109.46799 * 144.62963 * 9 8 7 36 36 H 1.07994 * 119.82348 * 0.02562 * 13 12 10 37 37 H 1.07997 * 119.79240 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.97863 * 179.97438 * 15 14 13 39 39 H 0.97004 * 119.99413 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.20007 * 0.26079 * 25 12 10 41 41 H 1.08004 * 120.07181 * 180.25580 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1941 2.6659 0.0006 5 6 1.5043 4.0117 0.0000 6 6 2.8248 4.4197 0.0058 7 6 3.8451 3.4767 -0.0004 8 7 5.1809 3.8909 -0.0010 9 6 6.2525 2.9077 -0.1774 10 6 5.4823 5.1945 0.1607 11 8 4.6134 5.9849 0.4736 12 6 6.8697 5.6633 -0.0425 13 6 7.9444 4.8797 0.3926 14 6 9.2452 5.3114 0.2055 15 6 9.4979 6.5175 -0.4101 16 6 8.4299 7.3196 -0.8541 17 6 8.6862 8.5582 -1.4870 18 1 9.5302 9.1575 -1.1792 19 6 7.8462 9.0070 -2.5123 20 7 6.7847 8.3151 -2.8383 21 14 8.2404 10.5940 -3.4154 22 1 9.1004 10.2953 -4.5887 23 1 6.9789 11.2284 -3.8750 24 1 8.9552 11.5197 -2.5004 25 6 7.1077 6.8831 -0.6653 26 6 3.5376 2.1237 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1613 2.3504 0.0005 31 1 0.7133 4.7470 0.0000 32 1 3.0638 5.4729 0.0106 33 1 6.6263 2.5986 0.7987 34 1 5.8648 2.0392 -0.7097 35 1 7.0639 3.3540 -0.7524 36 1 7.7572 3.9325 0.8764 37 1 10.0678 4.6992 0.5446 38 1 10.5163 6.8479 -0.5522 39 1 6.2023 8.6265 -3.5488 40 1 6.2812 7.4934 -0.9984 41 1 4.3290 1.3888 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171047269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:37 Heat of formation + Delta-G solvation = 36.946506 kcal Electronic energy + Delta-G solvation = -24364.509160 eV Core-core repulsion = 20915.196675 eV Total energy + Delta-G solvation = -3449.312485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.60327 -38.40045 -37.11183 -35.49361 -33.73491 -31.27959 -30.84235 -29.81457 -29.57463 -28.69513 -26.91415 -25.40544 -23.59021 -22.72687 -21.29008 -21.00996 -19.45015 -17.92066 -17.43109 -16.66948 -16.01105 -15.67332 -15.44020 -15.32937 -14.90328 -14.58160 -14.26364 -14.03345 -13.89455 -13.60712 -13.35376 -12.95437 -12.79170 -12.74184 -12.62544 -12.49183 -12.09328 -11.73547 -11.70017 -11.44791 -11.18059 -11.16734 -10.60572 -10.55266 -10.38889 -10.25600 -10.02578 -9.80043 -9.47327 -9.34751 -8.90539 -7.91958 -7.72212 -7.47750 -7.38545 -6.74101 -4.53353 1.32080 1.37506 1.38320 2.16834 2.26425 2.73538 3.04777 3.07506 3.08924 3.10045 3.42694 3.90010 3.93009 4.55664 4.79874 4.80630 4.84026 5.00343 5.11669 5.20972 5.37989 5.40549 5.48096 5.54419 5.61818 5.66682 5.87145 5.95016 6.02536 6.18191 6.21218 6.38210 6.57550 6.59871 6.68834 6.90186 6.92039 7.17329 7.25012 7.30690 7.48688 7.60808 7.71239 7.89736 8.08459 8.42785 8.53213 8.74319 8.78194 10.17685 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002870 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.834021 B = 9752.664481 C =10696.329415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.126 6.126 3 C -0.062 4.062 4 C -0.168 4.168 5 C -0.078 4.078 6 C -0.164 4.164 7 C 0.187 3.813 8 N -0.556 5.556 9 C 0.064 3.936 10 C 0.572 3.428 11 O -0.517 6.517 12 C -0.132 4.132 13 C -0.214 4.214 14 C -0.105 4.105 15 C -0.196 4.196 16 C 0.096 3.904 17 C -0.462 4.462 18 H 0.080 0.920 19 C 0.069 3.931 20 N -0.808 5.808 21 Si 0.918 3.082 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.083 4.083 26 C -0.149 4.149 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.177 0.823 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.281 0.719 40 H 0.140 0.860 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 -12.911 2.729 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.115 5.885 3 C -0.175 4.175 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.186 4.186 7 C 0.089 3.911 8 N -0.277 5.277 9 C -0.078 4.078 10 C 0.367 3.633 11 O -0.394 6.394 12 C -0.135 4.135 13 C -0.233 4.233 14 C -0.124 4.124 15 C -0.216 4.216 16 C 0.093 3.907 17 C -0.492 4.492 18 H 0.098 0.902 19 C -0.147 4.147 20 N -0.435 5.435 21 Si 0.743 3.257 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.103 4.103 26 C -0.175 4.175 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.194 0.806 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.157 0.843 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.537 -13.492 2.727 16.197 hybrid contribution -0.672 1.523 -0.541 1.750 sum -9.209 -11.969 2.186 15.259 Atomic orbital electron populations 1.23634 0.94905 1.06767 1.05714 1.85351 1.06306 1.03766 1.93124 1.21268 0.95869 0.95897 1.04465 1.21024 0.97660 0.93367 1.07246 1.21016 0.96386 0.94861 0.97532 1.22523 0.91148 1.03274 1.01634 1.17888 0.83944 0.92548 0.96714 1.45465 1.04572 1.08659 1.69019 1.22471 0.90958 0.92060 1.02324 1.19151 0.89888 0.79801 0.74502 1.90444 1.48908 1.54381 1.45689 1.19358 0.89491 0.98302 1.06387 1.20823 0.92367 1.00567 1.09557 1.20488 0.95101 0.96614 1.00158 1.21291 0.98012 0.95365 1.06895 1.17624 0.90406 0.92894 0.89733 1.19547 1.10847 1.03310 1.15491 0.90193 1.25915 0.93606 0.98113 0.97030 1.69705 1.11014 1.36955 1.25783 0.86146 0.78737 0.81034 0.79808 1.19467 1.20177 1.18594 1.21792 0.98713 0.93243 0.96566 1.20299 0.94953 0.93950 1.08291 0.89765 0.87636 0.89779 0.86347 0.85610 0.80606 0.91625 0.91032 0.87879 0.87741 0.88549 0.88338 0.90759 0.84292 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.15 101.05 0.92 -0.12 16 2 S -0.13 -1.39 22.56 -107.50 -2.43 -3.81 16 3 C -0.06 -0.84 6.11 -39.06 -0.24 -1.08 16 4 C -0.17 -2.17 9.36 -39.33 -0.37 -2.54 16 5 C -0.08 -1.10 10.03 -39.64 -0.40 -1.50 16 6 C -0.16 -2.86 8.95 -39.33 -0.35 -3.21 16 7 C 0.19 3.20 6.48 -83.75 -0.54 2.65 16 8 N -0.56 -9.95 3.10 -121.91 -0.38 -10.33 16 9 C 0.06 0.90 8.28 59.85 0.50 1.40 16 10 C 0.57 12.29 7.23 -12.33 -0.09 12.20 16 11 O -0.52 -12.10 13.48 5.31 0.07 -12.03 16 12 C -0.13 -2.98 5.33 -105.04 -0.56 -3.54 16 13 C -0.21 -4.24 7.51 -38.91 -0.29 -4.53 16 14 C -0.11 -2.11 10.01 -39.72 -0.40 -2.51 16 15 C -0.20 -4.42 9.78 -38.81 -0.38 -4.80 16 16 C 0.10 2.44 5.55 -106.87 -0.59 1.84 16 17 C -0.46 -11.80 9.04 -37.73 -0.34 -12.15 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 20 N -0.81 -20.74 10.61 55.55 0.59 -20.15 16 21 Si 0.92 18.56 29.56 -169.99 -5.02 13.54 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.08 -2.12 8.24 -38.44 -0.32 -2.44 16 26 C -0.15 -2.19 8.89 -39.18 -0.35 -2.54 16 27 H 0.08 0.58 7.75 -51.92 -0.40 0.18 16 28 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.08 0.58 7.75 -51.92 -0.40 0.17 16 30 H 0.12 1.20 5.87 -52.49 -0.31 0.90 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.18 3.49 4.80 -54.67 -0.26 3.23 16 33 H 0.07 0.81 7.05 -51.93 -0.37 0.45 16 34 H 0.07 0.85 6.26 -51.93 -0.33 0.52 16 35 H 0.10 1.58 5.53 -51.93 -0.29 1.29 16 36 H 0.10 1.74 5.11 -52.49 -0.27 1.48 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.14 3.85 6.14 -52.48 -0.32 3.53 16 41 H 0.13 1.69 6.27 -52.48 -0.33 1.36 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -28.34 346.95 -10.34 -38.68 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.51 Total: 10.11 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.89 Total: -21.24 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.21 Total: -30.47 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.43 Total: -3.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.34 -10.34 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171047269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.629 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds