Wall clock time and date at job start Tue Mar 31 2020 15:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76194 * 103.00047 * 2 1 4 4 C 1.39048 * 120.04473 * 0.02637 * 3 2 1 5 5 C 1.38114 * 120.06573 * 180.02562 * 4 3 2 6 6 C 1.38202 * 120.14850 * 359.67006 * 5 4 3 7 7 C 1.38940 * 120.08523 * 0.60232 * 6 5 4 8 8 N 1.39850 * 120.02730 * 179.69297 * 7 6 5 9 9 C 1.46500 * 119.99727 * 187.69032 * 8 7 6 10 10 C 1.34774 * 120.00481 * 7.69577 * 8 7 6 11 11 O 1.21559 * 119.99615 * 9.24606 * 10 8 7 12 12 C 1.47848 * 120.00473 * 189.24524 * 10 8 7 13 13 C 1.39936 * 120.02439 * 321.00854 * 12 10 8 14 14 C 1.38332 * 120.35462 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.41314 * 0.04754 * 14 13 12 16 16 C 1.40751 * 120.04368 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17723 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00205 * 325.64945 * 17 16 15 19 19 C 1.39938 * 119.99725 * 145.64101 * 17 16 15 20 20 N 1.30826 * 119.99919 * 3.54638 * 19 17 16 21 21 Si 1.86801 * 119.99825 * 183.54410 * 19 17 16 22 22 H 1.48505 * 109.47084 * 90.00375 * 21 19 17 23 23 H 1.48499 * 109.46947 * 210.00392 * 21 19 17 24 24 H 1.48502 * 109.47048 * 329.99986 * 21 19 17 25 25 C 1.39011 * 120.02868 * 141.04671 * 12 10 8 26 26 C 1.38750 * 119.93688 * 359.42675 * 7 6 5 27 27 H 1.09006 * 109.47162 * 59.99725 * 1 2 3 28 28 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47509 * 299.99625 * 1 2 3 30 30 H 1.07997 * 119.96792 * 359.96811 * 4 3 2 31 31 H 1.08000 * 119.92598 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.95533 * 180.32035 * 6 5 4 33 33 H 1.08995 * 109.47481 * 264.62949 * 9 8 7 34 34 H 1.09000 * 109.47287 * 24.63389 * 9 8 7 35 35 H 1.09005 * 109.46799 * 144.62963 * 9 8 7 36 36 H 1.07994 * 119.82348 * 0.02562 * 13 12 10 37 37 H 1.07997 * 119.79240 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.97863 * 179.97438 * 15 14 13 39 39 H 0.97004 * 119.99413 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.20007 * 0.26079 * 25 12 10 41 41 H 1.08004 * 120.07181 * 180.25580 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1941 2.6659 0.0006 5 6 1.5043 4.0117 0.0000 6 6 2.8248 4.4197 0.0058 7 6 3.8451 3.4767 -0.0004 8 7 5.1809 3.8909 -0.0010 9 6 6.2525 2.9077 -0.1774 10 6 5.4823 5.1945 0.1607 11 8 4.6134 5.9849 0.4736 12 6 6.8697 5.6633 -0.0425 13 6 7.9444 4.8797 0.3926 14 6 9.2452 5.3114 0.2055 15 6 9.4979 6.5175 -0.4101 16 6 8.4299 7.3196 -0.8541 17 6 8.6862 8.5582 -1.4870 18 1 9.5302 9.1575 -1.1792 19 6 7.8462 9.0070 -2.5123 20 7 6.7847 8.3151 -2.8383 21 14 8.2404 10.5940 -3.4154 22 1 9.1004 10.2953 -4.5887 23 1 6.9789 11.2284 -3.8750 24 1 8.9552 11.5197 -2.5004 25 6 7.1077 6.8831 -0.6653 26 6 3.5376 2.1237 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1613 2.3504 0.0005 31 1 0.7133 4.7470 0.0000 32 1 3.0638 5.4729 0.0106 33 1 6.6263 2.5986 0.7987 34 1 5.8648 2.0392 -0.7097 35 1 7.0639 3.3540 -0.7524 36 1 7.7572 3.9325 0.8764 37 1 10.0678 4.6992 0.5446 38 1 10.5163 6.8479 -0.5522 39 1 6.2023 8.6265 -3.5488 40 1 6.2812 7.4934 -0.9984 41 1 4.3290 1.3888 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171047269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:36 Heat of formation + Delta-G solvation = 23.395994 kcal Electronic energy + Delta-G solvation = -24365.096754 eV Core-core repulsion = 20915.196675 eV Total energy + Delta-G solvation = -3449.900079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.03710 -39.79315 -38.75901 -36.91978 -35.51681 -32.70704 -32.03885 -31.37789 -30.97813 -29.57434 -28.18323 -27.20581 -25.04311 -23.97619 -22.77726 -22.60347 -20.95997 -19.45490 -18.82399 -18.06558 -17.45578 -17.01666 -16.83261 -16.72554 -16.53736 -15.83397 -15.33856 -15.31953 -15.08645 -14.68022 -14.63699 -14.57133 -14.29399 -14.12574 -13.75553 -13.61515 -13.38145 -13.30098 -12.94405 -12.84744 -12.81699 -12.50867 -12.31172 -12.12332 -11.82850 -11.57965 -11.42627 -11.22757 -11.13753 -10.62185 -10.43873 -9.52508 -9.28396 -9.07493 -8.55431 -8.35280 -6.45080 0.04347 0.21120 0.52017 0.56660 0.99298 1.36898 1.45398 1.47435 1.50776 1.67087 1.89262 2.20640 2.69957 2.77128 3.50178 3.59107 3.85054 3.98890 4.12335 4.26593 4.29742 4.30612 4.36083 4.43528 4.48203 4.53371 4.65464 4.66950 4.82025 4.87043 4.88277 5.05083 5.10763 5.14496 5.21972 5.33666 5.41924 5.47937 5.51445 5.80336 5.89795 5.99373 6.05102 6.18344 6.28163 6.57950 6.89266 6.92230 6.96963 8.37451 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002870 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.834021 B = 9752.664481 C =10696.329415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.131 6.131 3 C -0.068 4.068 4 C -0.159 4.159 5 C -0.078 4.078 6 C -0.197 4.197 7 C 0.160 3.840 8 N -0.551 5.551 9 C 0.055 3.945 10 C 0.563 3.437 11 O -0.552 6.552 12 C -0.140 4.140 13 C -0.190 4.190 14 C -0.101 4.101 15 C -0.199 4.199 16 C 0.062 3.938 17 C -0.498 4.498 18 H 0.081 0.919 19 C 0.024 3.976 20 N -0.846 5.846 21 Si 0.988 3.012 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.119 4.119 26 C -0.146 4.146 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.112 0.888 39 H 0.282 0.718 40 H 0.103 0.897 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 -16.320 3.294 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.110 5.890 3 C -0.181 4.181 4 C -0.184 4.184 5 C -0.098 4.098 6 C -0.219 4.219 7 C 0.064 3.936 8 N -0.272 5.272 9 C -0.085 4.085 10 C 0.357 3.643 11 O -0.432 6.432 12 C -0.143 4.143 13 C -0.209 4.209 14 C -0.119 4.119 15 C -0.219 4.219 16 C 0.060 3.940 17 C -0.529 4.529 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.474 5.474 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.139 4.139 26 C -0.173 4.173 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.924 -16.963 3.300 19.449 hybrid contribution -0.691 2.277 -0.608 2.456 sum -9.614 -14.686 2.692 17.759 Atomic orbital electron populations 1.23812 0.91558 1.08645 1.06642 1.85422 1.09977 1.01010 1.92563 1.21629 0.95575 0.97983 1.02867 1.21392 0.99298 0.92414 1.05267 1.21233 0.95459 0.96390 0.96756 1.22344 0.93158 1.02010 1.04352 1.18071 0.83276 0.93665 0.98593 1.45408 1.05997 1.07799 1.67986 1.22715 0.89889 0.91890 1.03998 1.19099 0.89213 0.81117 0.74911 1.90454 1.49491 1.55816 1.47463 1.19595 0.91252 0.97736 1.05709 1.21319 0.91504 1.01058 1.07052 1.20974 0.96510 0.95854 0.98548 1.21578 0.97896 0.96088 1.06322 1.17959 0.91184 0.93936 0.90905 1.19811 1.11795 1.04371 1.16891 0.90061 1.26808 0.93148 1.01306 0.97532 1.69850 1.12154 1.38817 1.26578 0.85099 0.78531 0.76843 0.78598 1.18516 1.19930 1.17959 1.21543 0.98025 0.94902 0.99454 1.20480 0.96283 0.92891 1.07604 0.88867 0.85318 0.88787 0.83021 0.83685 0.83976 0.88996 0.88356 0.89061 0.83673 0.83881 0.86955 0.90760 0.87909 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.15 113.37 1.04 -0.39 16 2 S -0.13 -2.43 22.56 -56.49 -1.27 -3.70 16 3 C -0.07 -1.66 6.11 22.60 0.14 -1.52 16 4 C -0.16 -3.72 9.36 22.43 0.21 -3.51 16 5 C -0.08 -2.20 10.03 22.23 0.22 -1.97 16 6 C -0.20 -7.16 8.95 22.43 0.20 -6.95 16 7 C 0.16 5.52 6.48 38.15 0.25 5.77 16 8 N -0.55 -19.83 3.10 -657.89 -2.04 -21.87 16 9 C 0.06 1.45 8.28 127.77 1.06 2.51 16 10 C 0.56 25.36 7.23 86.79 0.63 25.98 16 11 O -0.55 -28.04 13.48 -3.90 -0.05 -28.10 16 12 C -0.14 -6.52 5.33 -20.14 -0.11 -6.63 16 13 C -0.19 -7.24 7.51 22.70 0.17 -7.07 16 14 C -0.10 -3.81 10.01 22.18 0.22 -3.58 16 15 C -0.20 -8.98 9.78 22.77 0.22 -8.76 16 16 C 0.06 3.32 5.55 -21.32 -0.12 3.20 16 17 C -0.50 -26.89 9.04 23.47 0.21 -26.68 16 18 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 19 C 0.02 1.23 5.42 85.25 0.46 1.69 16 20 N -0.85 -46.70 10.61 21.82 0.23 -46.47 16 21 Si 0.99 39.72 29.56 68.60 2.03 41.75 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 C -0.12 -6.48 8.24 23.01 0.19 -6.29 16 26 C -0.15 -4.06 8.89 22.53 0.20 -3.86 16 27 H 0.09 0.86 7.75 -2.39 -0.02 0.84 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.85 7.75 -2.39 -0.02 0.83 16 30 H 0.15 2.47 5.87 -2.91 -0.02 2.45 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.14 6.21 4.80 -37.45 -0.18 6.03 16 33 H 0.09 1.93 7.05 -2.39 -0.02 1.91 16 34 H 0.10 2.05 6.26 -2.39 -0.01 2.03 16 35 H 0.09 2.62 5.53 -2.38 -0.01 2.61 16 36 H 0.15 4.31 5.11 -2.91 -0.01 4.30 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 39 H 0.28 14.40 8.30 -92.71 -0.77 13.63 16 40 H 0.10 6.30 6.14 -2.91 -0.02 6.28 16 41 H 0.15 3.43 6.27 -2.91 -0.02 3.41 16 Total: -1.00 -68.73 346.95 5.00 -63.73 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.91 Total: 32.72 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 5.19 Total: -38.07 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.81 Total: -68.33 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -1.27 Total: -3.70 kcal Total: -68.73 5.00 -63.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171047269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.128 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds