Wall clock time and date at job start Tue Mar 31 2020 14:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99682 * 2 1 4 4 N 1.46502 * 109.46865 * 125.00365 * 3 2 1 5 5 C 1.46506 * 119.99937 * 85.00033 * 4 3 2 6 6 C 1.50703 * 109.47289 * 84.99851 * 5 4 3 7 7 C 1.38218 * 120.01072 * 105.00098 * 6 5 4 8 8 C 1.38214 * 120.02377 * 179.97438 * 7 6 5 9 9 C 1.38265 * 120.05476 * 0.02562 * 8 7 6 10 10 C 1.38180 * 120.02127 * 0.02562 * 9 8 7 11 11 C 1.38437 * 120.01312 * 284.72220 * 6 5 4 12 12 F 1.35097 * 120.02358 * 0.02562 * 11 6 5 13 13 S 1.65596 * 120.00234 * 264.99761 * 4 3 2 14 14 O 1.42102 * 104.27522 * 26.07202 * 13 4 3 15 15 O 1.42092 * 104.27862 * 153.92714 * 13 4 3 16 16 C 1.81398 * 104.44985 * 270.00061 * 13 4 3 17 17 C 1.53003 * 109.47231 * 179.97438 * 16 13 4 18 18 C 1.50705 * 109.47086 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00035 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99615 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99785 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00262 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46685 * 89.99987 * 22 20 18 24 24 H 1.48502 * 109.46843 * 210.00058 * 22 20 18 25 25 H 1.48497 * 109.46936 * 330.00136 * 22 20 18 26 26 H 1.08001 * 120.00146 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00285 * 180.02562 * 1 2 3 28 28 H 1.07992 * 119.99842 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47887 * 5.00340 * 3 2 1 30 30 H 1.09003 * 109.47459 * 244.99867 * 3 2 1 31 31 H 1.09001 * 109.47060 * 205.00301 * 5 4 3 32 32 H 1.09004 * 109.47073 * 324.99790 * 5 4 3 33 33 H 1.08006 * 119.98901 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.97625 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.99394 * 179.97438 * 9 8 7 36 36 H 1.08004 * 120.00951 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47438 * 300.00115 * 16 13 4 38 38 H 1.09003 * 109.47484 * 60.00009 * 16 13 4 39 39 H 1.08998 * 109.47050 * 300.00298 * 17 16 13 40 40 H 1.09002 * 109.46692 * 60.00394 * 17 16 13 41 41 H 0.96998 * 120.00197 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3218 0.7268 1.0023 6 6 5.2698 1.7227 0.3855 7 6 6.2124 2.3584 1.1716 8 6 7.0823 3.2715 0.6062 9 6 7.0106 3.5505 -0.7461 10 6 6.0684 2.9170 -1.5338 11 6 5.2008 1.9970 -0.9697 12 9 4.2833 1.3725 -1.7399 13 16 2.5444 2.0461 2.5562 14 8 1.1266 1.9508 2.5640 15 8 3.3283 1.3870 3.5412 16 6 3.0653 3.7747 2.3801 17 6 2.7002 4.5492 3.6481 18 6 3.1335 5.9851 3.5020 19 1 3.6202 6.3127 2.5953 20 6 2.9086 6.8806 4.5260 21 7 3.2872 8.1336 4.3987 22 14 2.0661 6.3141 6.0941 23 1 3.0884 5.8439 7.0631 24 1 1.3074 7.4458 6.6849 25 1 1.1328 5.2024 5.7807 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4027 -0.9314 31 1 4.6874 0.4393 1.9880 32 1 4.2584 -0.1564 0.3665 33 1 6.2691 2.1415 2.2282 34 1 7.8182 3.7680 1.2212 35 1 7.6906 4.2645 -1.1869 36 1 6.0123 3.1355 -2.5900 37 1 4.1437 3.8155 2.2269 38 1 2.5596 4.2212 1.5239 39 1 1.6217 4.5084 3.8009 40 1 3.2056 4.1029 4.5046 41 1 3.1286 8.7637 5.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171981441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:41 Heat of formation + Delta-G solvation = -67.569096 kcal Electronic energy + Delta-G solvation = -26546.721785 eV Core-core repulsion = 22662.107938 eV Total energy + Delta-G solvation = -3884.613846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.15844 -39.28632 -37.00623 -36.74580 -35.52843 -33.95024 -33.58422 -31.49445 -31.25977 -30.54862 -26.95507 -26.00947 -24.86550 -22.89925 -21.85856 -21.06114 -19.90114 -18.65371 -17.94449 -17.58267 -16.96234 -16.60312 -16.33119 -16.15302 -15.62831 -15.41378 -14.93478 -14.47396 -14.41451 -14.27489 -13.90045 -13.60770 -13.39452 -13.27159 -12.83878 -12.70032 -12.48921 -11.95746 -11.90393 -11.83216 -11.70490 -11.58121 -11.43376 -11.26575 -11.22832 -11.18075 -11.04192 -10.45300 -10.17465 -9.76418 -9.44177 -9.35952 -9.15000 -8.94775 -8.76180 -8.66800 -6.17073 -4.18007 0.59624 1.01074 1.07519 2.26501 2.99925 3.25455 3.33018 3.37585 3.49520 4.08512 4.17580 4.35233 4.46580 4.51913 4.57642 4.77257 4.88730 4.97586 5.11052 5.14638 5.16845 5.19434 5.38297 5.52179 5.53870 5.55295 5.70854 5.76796 5.82614 5.94077 5.97321 6.03191 6.22635 6.28668 6.30850 6.53665 6.63305 6.75512 6.81294 6.82665 6.93743 7.54330 8.36657 8.84428 9.42829 10.95331 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005231 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.145015 B = 5351.755940 C = 7010.808061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C 0.132 3.868 4 N -0.993 5.993 5 C 0.157 3.843 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.122 4.122 9 C -0.087 4.087 10 C -0.155 4.155 11 C 0.110 3.890 12 F -0.133 7.133 13 S 2.582 3.418 14 O -0.956 6.956 15 O -0.965 6.965 16 C -0.582 4.582 17 C -0.005 4.005 18 C -0.517 4.517 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.867 3.133 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.031 0.969 40 H 0.027 0.973 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 -14.693 -12.709 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.007 3.993 4 N -0.827 5.827 5 C 0.031 3.969 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.140 4.140 9 C -0.106 4.106 10 C -0.174 4.174 11 C 0.090 3.910 12 F -0.112 7.112 13 S 2.681 3.319 14 O -0.947 6.947 15 O -0.955 6.955 16 C -0.715 4.715 17 C -0.045 4.045 18 C -0.556 4.556 19 H 0.096 0.904 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.693 3.307 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.769 -15.038 -11.940 19.785 hybrid contribution -0.248 0.339 0.240 0.484 sum 4.521 -14.699 -11.700 19.323 Atomic orbital electron populations 1.23871 0.95908 1.02025 0.98964 1.23189 0.96199 0.98752 1.01296 1.20758 0.91687 0.95991 0.90850 1.57782 1.21510 1.72503 1.30880 1.20172 0.80085 0.93617 1.02987 1.20460 0.99924 1.02007 0.92530 1.21190 0.93663 0.94944 1.00367 1.21294 0.99649 0.97831 0.95197 1.21075 0.97348 0.98348 0.93808 1.21135 0.97000 0.98012 1.01231 1.17493 0.89793 0.95259 0.88457 1.91343 1.63754 1.81014 1.75050 1.05949 0.74712 0.78282 0.72991 1.93555 1.28986 1.86810 1.85317 1.93514 1.71838 1.72992 1.57160 1.30361 1.11741 1.19797 1.09622 1.19400 0.97557 0.97809 0.89693 1.20833 1.40024 0.90580 1.04132 0.90423 1.24969 0.94911 0.94747 0.98382 1.69877 1.46865 1.03186 1.33444 0.86958 0.80677 0.79098 0.83944 1.19646 1.20720 1.18642 0.88097 0.88602 0.87456 0.89810 0.87891 0.87313 0.89040 0.84260 0.84865 0.84963 0.84819 0.85768 0.85821 0.95050 0.95501 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 14.32 29.01 0.42 -1.59 16 2 C -0.17 -2.11 9.84 -36.03 -0.35 -2.46 16 3 C 0.13 1.66 5.64 -5.19 -0.03 1.63 16 4 N -0.99 -13.77 2.68 -116.94 -0.31 -14.08 16 5 C 0.16 1.84 5.54 -5.19 -0.03 1.81 16 6 C -0.15 -1.70 5.47 -104.55 -0.57 -2.27 16 7 C -0.08 -0.94 8.97 -39.60 -0.36 -1.30 16 8 C -0.12 -1.27 10.04 -39.58 -0.40 -1.67 16 9 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 10 C -0.15 -1.56 10.03 -39.52 -0.40 -1.95 16 11 C 0.11 1.24 7.13 -39.42 -0.28 0.96 16 12 F -0.13 -1.49 13.61 2.25 0.03 -1.46 16 13 S 2.58 45.90 5.37 -107.50 -0.58 45.32 16 14 O -0.96 -19.24 16.99 -57.54 -0.98 -20.22 16 15 O -0.96 -18.75 16.53 -57.54 -0.95 -19.70 16 16 C -0.58 -11.05 6.12 37.16 0.23 -10.82 16 17 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 18 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 22 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 27 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.08 1.08 7.26 -51.93 -0.38 0.70 16 30 H 0.10 1.17 4.57 -51.93 -0.24 0.93 16 31 H 0.11 1.27 6.63 -51.93 -0.34 0.93 16 32 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.14 1.49 8.00 -52.48 -0.42 1.07 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.12 2.18 7.44 -51.92 -0.39 1.79 16 38 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 39 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 40 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -33.68 358.96 -9.47 -43.15 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.48 Total: 2.82 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -2.71 Total: -31.88 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.46 Total: -40.23 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.93 Total: -39.92 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 45.90 SS G_CDS: -0.58 Total: 45.32 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.68 -9.47 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171981441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.417 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds