Wall clock time and date at job start Tue Mar 31 2020 14:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99682 * 2 1 4 4 N 1.46502 * 109.46865 * 125.00365 * 3 2 1 5 5 C 1.46506 * 119.99937 * 85.00033 * 4 3 2 6 6 C 1.50703 * 109.47289 * 84.99851 * 5 4 3 7 7 C 1.38218 * 120.01072 * 105.00098 * 6 5 4 8 8 C 1.38214 * 120.02377 * 179.97438 * 7 6 5 9 9 C 1.38265 * 120.05476 * 0.02562 * 8 7 6 10 10 C 1.38180 * 120.02127 * 0.02562 * 9 8 7 11 11 C 1.38437 * 120.01312 * 284.72220 * 6 5 4 12 12 F 1.35097 * 120.02358 * 0.02562 * 11 6 5 13 13 S 1.65596 * 120.00234 * 264.99761 * 4 3 2 14 14 O 1.42102 * 104.27522 * 26.07202 * 13 4 3 15 15 O 1.42092 * 104.27862 * 153.92714 * 13 4 3 16 16 C 1.81398 * 104.44985 * 270.00061 * 13 4 3 17 17 C 1.53003 * 109.47231 * 179.97438 * 16 13 4 18 18 C 1.50705 * 109.47086 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00035 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99615 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99785 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00262 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46685 * 89.99987 * 22 20 18 24 24 H 1.48502 * 109.46843 * 210.00058 * 22 20 18 25 25 H 1.48497 * 109.46936 * 330.00136 * 22 20 18 26 26 H 1.08001 * 120.00146 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00285 * 180.02562 * 1 2 3 28 28 H 1.07992 * 119.99842 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47887 * 5.00340 * 3 2 1 30 30 H 1.09003 * 109.47459 * 244.99867 * 3 2 1 31 31 H 1.09001 * 109.47060 * 205.00301 * 5 4 3 32 32 H 1.09004 * 109.47073 * 324.99790 * 5 4 3 33 33 H 1.08006 * 119.98901 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.97625 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.99394 * 179.97438 * 9 8 7 36 36 H 1.08004 * 120.00951 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47438 * 300.00115 * 16 13 4 38 38 H 1.09003 * 109.47484 * 60.00009 * 16 13 4 39 39 H 1.08998 * 109.47050 * 300.00298 * 17 16 13 40 40 H 1.09002 * 109.46692 * 60.00394 * 17 16 13 41 41 H 0.96998 * 120.00197 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3218 0.7268 1.0023 6 6 5.2698 1.7227 0.3855 7 6 6.2124 2.3584 1.1716 8 6 7.0823 3.2715 0.6062 9 6 7.0106 3.5505 -0.7461 10 6 6.0684 2.9170 -1.5338 11 6 5.2008 1.9970 -0.9697 12 9 4.2833 1.3725 -1.7399 13 16 2.5444 2.0461 2.5562 14 8 1.1266 1.9508 2.5640 15 8 3.3283 1.3870 3.5412 16 6 3.0653 3.7747 2.3801 17 6 2.7002 4.5492 3.6481 18 6 3.1335 5.9851 3.5020 19 1 3.6202 6.3127 2.5953 20 6 2.9086 6.8806 4.5260 21 7 3.2872 8.1336 4.3987 22 14 2.0661 6.3141 6.0941 23 1 3.0884 5.8439 7.0631 24 1 1.3074 7.4458 6.6849 25 1 1.1328 5.2024 5.7807 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4027 -0.9314 31 1 4.6874 0.4393 1.9880 32 1 4.2584 -0.1564 0.3665 33 1 6.2691 2.1415 2.2282 34 1 7.8182 3.7680 1.2212 35 1 7.6906 4.2645 -1.1869 36 1 6.0123 3.1355 -2.5900 37 1 4.1437 3.8155 2.2269 38 1 2.5596 4.2212 1.5239 39 1 1.6217 4.5084 3.8009 40 1 3.2056 4.1029 4.5046 41 1 3.1286 8.7637 5.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171981441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:40 Heat of formation + Delta-G solvation = -88.385244 kcal Electronic energy + Delta-G solvation = -26547.624440 eV Core-core repulsion = 22662.107938 eV Total energy + Delta-G solvation = -3885.516502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.00481 -40.11889 -38.31649 -37.93593 -37.02813 -35.91140 -34.50750 -33.48943 -32.16576 -31.36661 -27.97449 -27.82367 -25.91851 -23.71579 -23.21456 -22.47911 -20.88486 -19.94095 -19.40317 -18.78106 -18.40611 -17.72318 -17.25330 -17.24630 -16.79866 -16.60247 -16.38949 -16.04009 -15.52504 -15.25712 -15.19847 -14.84305 -14.75180 -14.27742 -14.18222 -13.83109 -13.69210 -13.42543 -13.28955 -13.23635 -13.08592 -12.99938 -12.83176 -12.56436 -12.40509 -12.27932 -12.20550 -11.97927 -11.90550 -11.72082 -11.32158 -10.84614 -10.29479 -10.13766 -9.95456 -9.60761 -8.36684 -6.42164 -0.80877 0.15797 0.25983 1.27947 1.30833 1.33111 1.42936 1.80927 2.28903 2.65559 2.74243 2.97065 3.10891 3.26816 3.63962 3.67459 3.80706 3.93191 3.97814 4.08314 4.10503 4.23816 4.35009 4.40859 4.52823 4.54716 4.65392 4.81059 4.81579 4.95899 5.02979 5.05878 5.08820 5.12408 5.22225 5.40377 5.46078 5.48741 5.50974 5.72168 5.90524 5.95988 6.16926 6.63114 7.22008 8.78851 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.005231 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.145015 B = 5351.755940 C = 7010.808061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.184 4.184 3 C 0.125 3.875 4 N -0.983 5.983 5 C 0.153 3.847 6 C -0.156 4.156 7 C -0.099 4.099 8 C -0.132 4.132 9 C -0.088 4.088 10 C -0.158 4.158 11 C 0.099 3.901 12 F -0.134 7.134 13 S 2.606 3.394 14 O -0.979 6.979 15 O -0.981 6.981 16 C -0.588 4.588 17 C -0.013 4.013 18 C -0.524 4.524 19 H 0.048 0.952 20 C 0.017 3.983 21 N -0.938 5.938 22 Si 0.921 3.079 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.252 1.252 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.029 0.971 40 H 0.031 0.969 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -16.214 -13.228 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.203 4.203 3 C 0.002 3.998 4 N -0.819 5.819 5 C 0.028 3.972 6 C -0.158 4.158 7 C -0.118 4.118 8 C -0.150 4.150 9 C -0.106 4.106 10 C -0.176 4.176 11 C 0.080 3.920 12 F -0.112 7.112 13 S 2.703 3.297 14 O -0.970 6.970 15 O -0.971 6.971 16 C -0.719 4.719 17 C -0.052 4.052 18 C -0.563 4.563 19 H 0.067 0.933 20 C -0.182 4.182 21 N -0.578 5.578 22 Si 0.743 3.257 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.176 1.176 26 H 0.112 0.888 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.891 -16.549 -12.458 21.284 hybrid contribution -0.212 0.811 0.258 0.877 sum 4.679 -15.738 -12.200 20.456 Atomic orbital electron populations 1.24067 0.96091 1.02673 0.98428 1.23305 0.96397 0.98940 1.01699 1.20954 0.91710 0.96446 0.90731 1.57489 1.22747 1.71606 1.30034 1.20389 0.78831 0.94356 1.03627 1.20435 1.00195 1.02371 0.92830 1.21345 0.94244 0.95544 1.00619 1.21563 0.99771 0.97683 0.95980 1.21413 0.97385 0.98297 0.93479 1.21435 0.96485 0.97357 1.02366 1.17642 0.90207 0.95775 0.88426 1.91329 1.63826 1.81094 1.74995 1.05027 0.73810 0.77294 0.73535 1.93521 1.30500 1.86824 1.86108 1.93488 1.72088 1.72847 1.58659 1.30362 1.12689 1.21234 1.07578 1.19344 0.97326 0.96159 0.92342 1.21105 1.39311 0.92830 1.03011 0.93328 1.25815 0.95712 0.94787 1.01840 1.69999 1.48525 1.04459 1.34807 0.86089 0.80199 0.79215 0.80157 1.18267 1.19822 1.17582 0.88826 0.86751 0.85886 0.90399 0.86402 0.87363 0.86715 0.84216 0.83683 0.82533 0.82858 0.84730 0.85042 0.95249 0.95042 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 14.32 67.78 0.97 -2.86 16 2 C -0.18 -4.08 9.84 25.64 0.25 -3.82 16 3 C 0.13 2.97 5.64 85.63 0.48 3.46 16 4 N -0.98 -25.79 2.68 -523.88 -1.41 -27.20 16 5 C 0.15 3.33 5.54 85.63 0.47 3.80 16 6 C -0.16 -3.40 5.47 -19.82 -0.11 -3.51 16 7 C -0.10 -2.16 8.97 22.26 0.20 -1.96 16 8 C -0.13 -2.60 10.04 22.27 0.22 -2.37 16 9 C -0.09 -1.52 10.04 22.26 0.22 -1.29 16 10 C -0.16 -2.85 10.03 22.31 0.22 -2.63 16 11 C 0.10 2.07 7.13 22.37 0.16 2.23 16 12 F -0.13 -2.73 13.61 44.97 0.61 -2.12 16 13 S 2.61 90.08 5.37 -56.49 -0.30 89.78 16 14 O -0.98 -38.50 16.99 -127.65 -2.17 -40.67 16 15 O -0.98 -37.04 16.53 -127.65 -2.11 -39.15 16 16 C -0.59 -22.10 6.12 71.98 0.44 -21.66 16 17 C -0.01 -0.60 4.05 29.85 0.12 -0.48 16 18 C -0.52 -29.60 9.66 25.60 0.25 -29.35 16 19 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 20 C 0.02 0.99 5.47 84.65 0.46 1.46 16 21 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 22 Si 0.92 43.72 27.47 68.60 1.88 45.60 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 26 H 0.09 2.16 7.84 -2.91 -0.02 2.14 16 27 H 0.11 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.08 1.93 7.26 -2.39 -0.02 1.92 16 30 H 0.12 2.45 4.57 -2.39 -0.01 2.44 16 31 H 0.11 2.39 6.63 -2.39 -0.02 2.37 16 32 H 0.11 1.98 8.04 -2.38 -0.02 1.96 16 33 H 0.14 2.94 8.00 -2.91 -0.02 2.91 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.13 4.70 7.44 -2.39 -0.02 4.68 16 38 H 0.13 4.65 8.14 -2.39 -0.02 4.63 16 39 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 40 H 0.03 1.45 7.57 -2.39 -0.02 1.44 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.53 358.96 2.15 -69.38 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.97 Total: 20.39 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 4.37 Total: -59.00 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.11 Total: -84.21 kcal Atomic # 8 Polarization: -75.53 SS G_CDS: -4.28 Total: -79.81 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.61 Total: -2.12 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 16 Polarization: 90.08 SS G_CDS: -0.30 Total: 89.78 kcal Total: -71.53 2.15 -69.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171981441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.006 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds