Wall clock time and date at job start Tue Mar 31 2020 14:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46881 * 2 1 4 4 H 1.09002 * 109.47163 * 54.99920 * 3 2 1 5 5 C 1.53005 * 109.47254 * 175.00031 * 3 2 1 6 6 N 1.46502 * 109.47146 * 185.00109 * 5 3 2 7 7 C 1.34778 * 119.99720 * 179.97438 * 6 5 3 8 8 O 1.21289 * 120.00003 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.99899 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.76200 * 99.99848 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99773 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00113 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99997 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46979 * 59.99762 * 15 13 11 17 17 H 1.48502 * 109.47040 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47245 * 299.99786 * 15 13 11 19 19 O 1.42898 * 109.47402 * 295.00204 * 3 2 1 20 20 C 1.35955 * 117.00350 * 99.42843 * 19 3 2 21 21 C 1.38661 * 120.06003 * 354.33669 * 20 19 3 22 22 C 1.38185 * 119.96754 * 180.27417 * 21 20 19 23 23 C 1.38264 * 120.09486 * 0.02562 * 22 21 20 24 24 C 1.38255 * 120.12711 * 359.97438 * 23 22 21 25 25 C 1.38337 * 120.02841 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.04370 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47097 * 299.99512 * 1 2 3 28 28 H 1.08996 * 109.47267 * 60.00410 * 1 2 3 29 29 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47301 * 240.00007 * 2 1 3 31 31 H 1.08995 * 109.46998 * 120.00067 * 2 1 3 32 32 H 1.09004 * 109.47026 * 305.00147 * 5 3 2 33 33 H 1.09002 * 109.46902 * 64.99912 * 5 3 2 34 34 H 0.96998 * 119.99783 * 359.97438 * 6 5 3 35 35 H 1.09004 * 109.47091 * 300.00099 * 9 7 6 36 36 H 1.08999 * 109.47555 * 59.99696 * 9 7 6 37 37 H 0.97008 * 120.00198 * 180.02562 * 14 13 11 38 38 H 1.08002 * 120.01360 * 0.30132 * 21 20 19 39 39 H 1.07997 * 119.95112 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.93185 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.98500 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0432 2.8239 0.2458 7 6 5.3623 3.0713 0.3695 8 8 6.1533 2.1519 0.3808 9 6 5.8543 4.4902 0.4936 10 16 7.6583 4.4925 0.6422 11 6 7.9527 6.2251 0.7677 12 1 7.1241 6.9171 0.7396 13 6 9.2498 6.7007 0.9017 14 7 10.2598 5.8572 0.9355 15 14 9.5621 8.5376 1.0342 16 1 8.8581 9.0748 2.2263 17 1 11.0205 8.7833 1.1687 18 1 9.0561 9.2151 -0.1865 19 8 1.6619 2.0814 -1.2210 20 6 0.5662 2.8854 -1.1834 21 6 -0.1982 2.9643 -0.0292 22 6 -1.3147 3.7778 0.0050 23 6 -1.6712 4.5130 -1.1103 24 6 -0.9119 4.4373 -2.2632 25 6 0.2069 3.6246 -2.3032 26 9 0.9494 3.5508 -3.4295 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8571 0.8800 1.0113 33 1 4.0029 0.9836 -0.7597 34 1 3.4105 3.5591 0.2363 35 1 5.5623 5.0548 -0.3919 36 1 5.4159 4.9508 1.3789 37 1 11.1663 6.1896 1.0296 38 1 0.0792 2.3905 0.8427 39 1 -1.9101 3.8387 0.9039 40 1 -2.5442 5.1483 -1.0806 41 1 -1.1927 5.0123 -3.1332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177174365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:55 Heat of formation + Delta-G solvation = -98.309646 kcal Electronic energy + Delta-G solvation = -24867.374147 eV Core-core repulsion = 20981.427290 eV Total energy + Delta-G solvation = -3885.946856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.97754 -40.82839 -39.12174 -38.02984 -34.99923 -33.64658 -32.41384 -31.13155 -30.54572 -29.78744 -27.90188 -25.47900 -24.12944 -23.54352 -22.85288 -21.13811 -20.24009 -19.09719 -17.92095 -17.34174 -16.95922 -16.51168 -16.11764 -15.98291 -15.73517 -15.21323 -15.05455 -14.92820 -14.78984 -14.21752 -14.07756 -13.84638 -13.45954 -13.29877 -13.16999 -12.95820 -12.63615 -12.50591 -12.40571 -12.09686 -11.87186 -11.73646 -11.55662 -11.18403 -11.03112 -11.02501 -10.87037 -10.74944 -9.81316 -9.42647 -9.30619 -9.05235 -8.93293 -8.52764 -8.22888 -6.48506 -6.20048 -3.90649 0.73749 0.87490 2.64597 3.00250 3.09772 3.19391 3.24844 3.28294 3.31549 3.67664 3.89458 4.21153 4.22354 4.26962 4.44478 4.47476 4.51846 4.74660 4.84209 4.88057 5.00764 5.08294 5.14966 5.18881 5.25099 5.43512 5.49737 5.55321 5.58701 5.65500 5.68400 5.77119 5.78546 5.85657 5.90602 5.99334 6.15726 6.28569 6.54031 6.96218 7.60717 7.65724 8.36607 8.59005 9.25075 10.87347 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002691 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.812241 B =10403.712094 C =11568.537000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C 0.069 3.931 4 H 0.087 0.913 5 C 0.122 3.878 6 N -0.737 5.737 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 O -0.293 6.293 20 C 0.102 3.898 21 C -0.188 4.188 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.117 4.117 25 C 0.068 3.932 26 F -0.131 7.131 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.375 -7.437 -1.626 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.179 4.179 3 C 0.013 3.987 4 H 0.105 0.895 5 C -0.002 4.002 6 N -0.392 5.392 7 C 0.320 3.680 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 O -0.207 6.207 20 C 0.055 3.945 21 C -0.206 4.206 22 C -0.108 4.108 23 C -0.150 4.150 24 C -0.136 4.136 25 C 0.048 3.952 26 F -0.109 7.109 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.667 -9.075 -1.799 28.226 hybrid contribution -0.986 2.571 0.015 2.754 sum -27.652 -6.504 -1.784 28.463 Atomic orbital electron populations 1.21925 0.94996 1.02424 1.02065 1.21952 0.96866 0.94827 1.04217 1.22984 0.95274 0.94262 0.86201 0.89539 1.21467 0.90328 0.84991 1.03444 1.45915 1.08035 1.07934 1.77334 1.20302 0.81251 0.91348 0.75106 1.90705 1.54297 1.46140 1.47941 1.23529 1.06956 0.95018 1.04892 1.85376 0.92149 1.10056 1.95652 1.22832 0.95486 0.91762 1.58366 0.90976 1.24989 0.94998 0.99003 0.94564 1.70009 0.99285 1.34514 1.46516 0.86223 0.77342 0.83117 0.78816 1.19944 1.20803 1.19920 1.86278 1.41540 1.57979 1.34903 1.19040 0.88988 0.92570 0.93866 1.21328 0.97632 1.03900 0.97743 1.21023 0.95950 0.95123 0.98675 1.20941 1.00612 1.00941 0.92470 1.21065 0.93662 0.98615 1.00225 1.17057 0.94058 1.01570 0.82546 1.91533 1.75580 1.95237 1.48568 0.92450 0.92262 0.92011 0.90101 0.89610 0.89399 0.90269 0.76902 0.89175 0.89237 0.92128 0.83988 0.85079 0.84901 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.48 37.16 0.32 -0.65 16 2 C -0.14 -0.98 5.64 -26.73 -0.15 -1.13 16 3 C 0.07 0.60 2.16 -26.73 -0.06 0.54 16 4 H 0.09 0.62 5.42 -51.93 -0.28 0.33 16 5 C 0.12 1.42 5.34 -4.04 -0.02 1.39 16 6 N -0.74 -10.31 5.50 -60.29 -0.33 -10.64 16 7 C 0.53 10.22 7.85 -10.99 -0.09 10.14 16 8 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 9 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.48 9.50 30.94 0.29 -15.19 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 15 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 O -0.29 -3.24 9.39 -19.60 -0.18 -3.42 16 20 C 0.10 1.02 5.66 -39.18 -0.22 0.80 16 21 C -0.19 -1.39 7.36 -39.44 -0.29 -1.69 16 22 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 23 C -0.13 -0.84 10.04 -39.57 -0.40 -1.24 16 24 C -0.12 -0.94 10.02 -39.54 -0.40 -1.34 16 25 C 0.07 0.73 7.31 -39.30 -0.29 0.44 16 26 F -0.13 -1.71 17.11 2.25 0.04 -1.67 16 27 H 0.06 0.29 6.74 -51.93 -0.35 -0.06 16 28 H 0.06 0.45 6.53 -51.93 -0.34 0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.71 8.47 -40.82 -0.35 4.36 16 35 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 36 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.14 0.83 4.29 -52.49 -0.22 0.60 16 39 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -35.59 362.32 -8.32 -43.91 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.31 Total: 0.90 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.57 Total: -9.81 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.40 Total: -36.33 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.10 Total: -15.21 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.59 -8.32 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177174365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.404 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds