Wall clock time and date at job start Tue Mar 31 2020 14:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46881 * 2 1 4 4 H 1.09002 * 109.47163 * 54.99920 * 3 2 1 5 5 C 1.53005 * 109.47254 * 175.00031 * 3 2 1 6 6 N 1.46502 * 109.47146 * 185.00109 * 5 3 2 7 7 C 1.34778 * 119.99720 * 179.97438 * 6 5 3 8 8 O 1.21289 * 120.00003 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.99899 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.76200 * 99.99848 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99773 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00113 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99997 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46979 * 59.99762 * 15 13 11 17 17 H 1.48502 * 109.47040 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47245 * 299.99786 * 15 13 11 19 19 O 1.42898 * 109.47402 * 295.00204 * 3 2 1 20 20 C 1.35955 * 117.00350 * 99.42843 * 19 3 2 21 21 C 1.38661 * 120.06003 * 354.33669 * 20 19 3 22 22 C 1.38185 * 119.96754 * 180.27417 * 21 20 19 23 23 C 1.38264 * 120.09486 * 0.02562 * 22 21 20 24 24 C 1.38255 * 120.12711 * 359.97438 * 23 22 21 25 25 C 1.38337 * 120.02841 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.04370 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47097 * 299.99512 * 1 2 3 28 28 H 1.08996 * 109.47267 * 60.00410 * 1 2 3 29 29 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47301 * 240.00007 * 2 1 3 31 31 H 1.08995 * 109.46998 * 120.00067 * 2 1 3 32 32 H 1.09004 * 109.47026 * 305.00147 * 5 3 2 33 33 H 1.09002 * 109.46902 * 64.99912 * 5 3 2 34 34 H 0.96998 * 119.99783 * 359.97438 * 6 5 3 35 35 H 1.09004 * 109.47091 * 300.00099 * 9 7 6 36 36 H 1.08999 * 109.47555 * 59.99696 * 9 7 6 37 37 H 0.97008 * 120.00198 * 180.02562 * 14 13 11 38 38 H 1.08002 * 120.01360 * 0.30132 * 21 20 19 39 39 H 1.07997 * 119.95112 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.93185 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.98500 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0432 2.8239 0.2458 7 6 5.3623 3.0713 0.3695 8 8 6.1533 2.1519 0.3808 9 6 5.8543 4.4902 0.4936 10 16 7.6583 4.4925 0.6422 11 6 7.9527 6.2251 0.7677 12 1 7.1241 6.9171 0.7396 13 6 9.2498 6.7007 0.9017 14 7 10.2598 5.8572 0.9355 15 14 9.5621 8.5376 1.0342 16 1 8.8581 9.0748 2.2263 17 1 11.0205 8.7833 1.1687 18 1 9.0561 9.2151 -0.1865 19 8 1.6619 2.0814 -1.2210 20 6 0.5662 2.8854 -1.1834 21 6 -0.1982 2.9643 -0.0292 22 6 -1.3147 3.7778 0.0050 23 6 -1.6712 4.5130 -1.1103 24 6 -0.9119 4.4373 -2.2632 25 6 0.2069 3.6246 -2.3032 26 9 0.9494 3.5508 -3.4295 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8571 0.8800 1.0113 33 1 4.0029 0.9836 -0.7597 34 1 3.4105 3.5591 0.2363 35 1 5.5623 5.0548 -0.3919 36 1 5.4159 4.9508 1.3789 37 1 11.1663 6.1896 1.0296 38 1 0.0792 2.3905 0.8427 39 1 -1.9101 3.8387 0.9039 40 1 -2.5442 5.1483 -1.0806 41 1 -1.1927 5.0123 -3.1332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177174365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:54 Heat of formation + Delta-G solvation = -121.980716 kcal Electronic energy + Delta-G solvation = -24868.400601 eV Core-core repulsion = 20981.427290 eV Total energy + Delta-G solvation = -3886.973311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81446 -41.56092 -40.50232 -38.72732 -36.05486 -34.60424 -34.51584 -31.83963 -31.47204 -30.76594 -28.95528 -27.65852 -24.88947 -24.23245 -23.46237 -22.03770 -21.45521 -19.87815 -19.75775 -18.19367 -17.85465 -17.67607 -17.18883 -17.03756 -16.88799 -16.67020 -16.18759 -16.00022 -15.80739 -15.50321 -15.02830 -14.75507 -14.58959 -14.53209 -14.37304 -13.87752 -13.75633 -13.46627 -13.18674 -13.08318 -12.98902 -12.87148 -12.66220 -12.61284 -12.34922 -12.20128 -11.86777 -11.72182 -11.46370 -11.14032 -11.00569 -10.31168 -10.22661 -9.89370 -9.18173 -8.68722 -8.35636 -6.14339 0.15222 0.28766 1.24317 1.43461 1.44893 1.54338 1.55750 1.97705 2.19379 2.26692 2.63060 2.98326 3.26191 3.29185 3.46977 3.66076 3.79534 3.87735 3.94981 3.98706 4.21289 4.24899 4.31696 4.35243 4.42373 4.46316 4.49204 4.65130 4.67789 4.80942 4.96895 5.06851 5.12516 5.15252 5.28482 5.30958 5.35242 5.40245 5.46455 5.73079 6.18398 6.31247 6.36877 7.05272 7.14598 8.73437 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002691 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.812241 B =10403.712094 C =11568.537000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.076 3.924 4 H 0.110 0.890 5 C 0.118 3.882 6 N -0.713 5.713 7 C 0.535 3.465 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.549 4.549 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.263 1.263 19 O -0.319 6.319 20 C 0.085 3.915 21 C -0.186 4.186 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.121 4.121 25 C 0.026 3.974 26 F -0.156 7.156 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.272 0.728 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.536 -5.963 -0.102 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.020 3.980 4 H 0.127 0.873 5 C -0.005 4.005 6 N -0.367 5.367 7 C 0.321 3.679 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.080 5.920 11 C -0.697 4.697 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.821 3.179 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.188 1.188 19 O -0.234 6.234 20 C 0.039 3.961 21 C -0.204 4.204 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.139 4.139 25 C 0.006 3.994 26 F -0.135 7.135 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.247 0.753 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.898 -7.601 -0.281 30.851 hybrid contribution -0.180 2.059 -0.468 2.119 sum -30.078 -5.542 -0.749 30.594 Atomic orbital electron populations 1.21896 0.94014 1.03011 1.02077 1.21960 0.97627 0.93520 1.04494 1.23004 0.92898 0.95634 0.86434 0.87278 1.21667 0.92571 0.83190 1.03092 1.45684 1.06329 1.09749 1.74935 1.20034 0.82599 0.90087 0.75155 1.90693 1.55834 1.46968 1.50489 1.23370 1.01448 0.96826 1.06527 1.85537 0.99277 1.11174 1.96015 1.23176 0.96275 0.91790 1.58472 0.89979 1.26140 0.94558 1.04688 0.93716 1.70176 0.99848 1.37159 1.47549 0.84996 0.77456 0.76019 0.79478 1.18473 1.20270 1.18803 1.86240 1.42474 1.58612 1.36043 1.19231 0.89339 0.92857 0.94651 1.21562 0.97561 1.04065 0.97211 1.21466 0.95308 0.93604 0.99658 1.21344 1.00844 1.00695 0.91642 1.21326 0.92978 0.98092 1.01553 1.17585 0.95496 1.03837 0.82462 1.91456 1.76443 1.95637 1.49953 0.90708 0.93865 0.91199 0.91415 0.87804 0.88329 0.92199 0.75297 0.87852 0.86937 0.91924 0.82213 0.81874 0.82013 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.48 71.98 0.61 -0.93 16 2 C -0.14 -1.70 5.64 30.59 0.17 -1.52 16 3 C 0.08 1.21 2.16 30.59 0.07 1.27 16 4 H 0.11 1.22 5.42 -2.39 -0.01 1.20 16 5 C 0.12 2.67 5.34 86.38 0.46 3.13 16 6 N -0.71 -19.26 5.50 -463.04 -2.55 -21.81 16 7 C 0.54 20.50 7.85 87.65 0.69 21.19 16 8 O -0.56 -26.50 15.86 -3.06 -0.05 -26.55 16 9 C -0.13 -5.37 6.16 71.23 0.44 -4.94 16 10 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 11 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.80 5.49 84.86 0.47 1.26 16 14 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 15 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 O -0.32 -6.94 9.39 -93.04 -0.87 -7.81 16 20 C 0.09 1.62 5.66 22.53 0.13 1.75 16 21 C -0.19 -2.23 7.36 22.36 0.16 -2.07 16 22 C -0.08 -0.71 10.04 22.26 0.22 -0.49 16 23 C -0.13 -1.23 10.04 22.28 0.22 -1.00 16 24 C -0.12 -1.80 10.02 22.30 0.22 -1.58 16 25 C 0.03 0.56 7.31 22.45 0.16 0.72 16 26 F -0.16 -4.31 17.11 44.97 0.77 -3.54 16 27 H 0.07 0.48 6.74 -2.39 -0.02 0.47 16 28 H 0.04 0.59 6.53 -2.39 -0.02 0.57 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.41 9.00 8.47 -92.71 -0.79 8.22 16 35 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 37 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 38 H 0.16 1.23 4.29 -2.91 -0.01 1.22 16 39 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -81.15 362.32 3.40 -77.74 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.28 Total: 16.16 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.68 Total: -14.45 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.26 Total: -78.08 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.92 Total: -34.36 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.77 Total: -3.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -81.15 3.40 -77.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177174365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.238 kcal (2) G-P(sol) polarization free energy of solvation -81.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds