Wall clock time and date at job start Tue Mar 31 2020 14:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47157 * 2 1 4 4 H 1.09011 * 109.47056 * 304.99756 * 3 2 1 5 5 C 1.53002 * 109.47367 * 185.00363 * 3 2 1 6 6 N 1.46500 * 109.47140 * 179.97438 * 5 3 2 7 7 C 1.34773 * 119.99497 * 179.97438 * 6 5 3 8 8 O 1.21277 * 120.00569 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99924 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47159 * 180.02562 * 9 7 6 11 11 C 1.76200 * 99.99854 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99831 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00113 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00041 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46710 * 60.00650 * 15 13 11 17 17 H 1.48499 * 109.46953 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47028 * 300.00416 * 15 13 11 19 19 O 1.42893 * 109.47239 * 65.00011 * 3 2 1 20 20 C 1.35958 * 116.99969 * 265.90574 * 19 3 2 21 21 C 1.38666 * 120.06484 * 357.64686 * 20 19 3 22 22 C 1.38178 * 119.96843 * 179.97438 * 21 20 19 23 23 C 1.38261 * 120.09810 * 359.72869 * 22 21 20 24 24 C 1.38257 * 120.12645 * 0.54669 * 23 22 21 25 25 C 1.38332 * 120.02660 * 359.45561 * 24 23 22 26 26 F 1.35100 * 120.04760 * 180.25140 * 25 24 23 27 27 H 1.09000 * 109.47689 * 60.00286 * 1 2 3 28 28 H 1.09003 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47323 * 299.99969 * 1 2 3 30 30 H 1.09008 * 109.46634 * 239.99810 * 2 1 3 31 31 H 1.08998 * 109.47050 * 120.00089 * 2 1 3 32 32 H 1.08999 * 109.46525 * 300.00187 * 5 3 2 33 33 H 1.08999 * 109.47056 * 59.99801 * 5 3 2 34 34 H 0.96997 * 120.00176 * 359.97438 * 6 5 3 35 35 H 1.09006 * 109.46551 * 300.00077 * 9 7 6 36 36 H 1.08998 * 109.47026 * 59.99780 * 9 7 6 37 37 H 0.97003 * 120.00244 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.01057 * 359.96152 * 21 20 19 39 39 H 1.08001 * 119.95071 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.93923 * 180.29910 * 23 22 21 41 41 H 1.07994 * 119.98837 * 179.72423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 4.0531 2.8256 -0.1264 7 6 5.3740 3.0732 -0.2278 8 8 6.1584 2.1528 -0.3190 9 6 5.8763 4.4941 -0.2290 10 16 7.6801 4.4962 -0.3777 11 6 7.9870 6.2311 -0.3547 12 1 7.1632 6.9241 -0.2671 13 6 9.2874 6.7072 -0.4482 14 7 10.2914 5.8627 -0.5545 15 14 9.6126 8.5466 -0.4245 16 1 9.1108 9.1216 0.8495 17 1 11.0727 8.7926 -0.5379 18 1 8.9128 9.1878 -1.5666 19 8 1.6620 2.0813 1.2210 20 6 0.5049 2.7951 1.2116 21 6 -0.2253 2.9192 0.0393 22 6 -1.4012 3.6447 0.0322 23 6 -1.8541 4.2426 1.1936 24 6 -1.1264 4.1262 2.3634 25 6 0.0516 3.4012 2.3765 26 9 0.7605 3.2829 3.5205 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.9994 0.9052 0.7160 33 1 3.8531 0.9570 -1.0572 34 1 3.4257 3.5618 -0.0539 35 1 5.4419 5.0322 -1.0717 36 1 5.5875 4.9824 0.7017 37 1 11.2002 6.1954 -0.6201 38 1 0.1252 2.4493 -0.8676 39 1 -1.9695 3.7416 -0.8811 40 1 -2.7761 4.8051 1.1863 41 1 -1.4799 4.5979 3.2683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177174379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:58 Heat of formation + Delta-G solvation = -97.692501 kcal Electronic energy + Delta-G solvation = -24856.463060 eV Core-core repulsion = 20970.542965 eV Total energy + Delta-G solvation = -3885.920095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.98536 -40.85577 -39.12305 -38.02998 -34.98465 -33.63542 -32.41263 -31.13893 -30.57054 -29.77717 -27.90331 -25.47692 -24.13695 -23.54185 -22.85613 -21.11801 -20.23674 -19.10733 -17.91946 -17.34474 -16.96322 -16.56077 -16.12842 -15.98658 -15.73049 -15.20935 -15.05816 -14.90719 -14.78791 -14.22467 -14.07175 -13.83674 -13.45707 -13.29245 -13.19780 -12.95164 -12.62518 -12.50551 -12.43256 -12.09505 -11.87145 -11.74011 -11.55907 -11.21887 -11.02881 -11.02327 -10.84204 -10.74800 -9.81108 -9.42353 -9.30543 -9.05025 -8.92551 -8.52260 -8.22652 -6.48289 -6.19865 -3.90441 0.73326 0.87158 2.63381 3.01035 3.10163 3.18584 3.25020 3.28482 3.31791 3.68181 3.88738 4.21339 4.22490 4.25499 4.43725 4.46907 4.51882 4.74165 4.83638 4.89276 5.00590 5.08002 5.15160 5.19078 5.25453 5.42569 5.50411 5.54698 5.58542 5.65229 5.68185 5.76930 5.78023 5.85631 5.91097 5.98880 6.16263 6.27749 6.54669 6.95401 7.60939 7.66872 8.36810 8.59519 9.25280 10.87550 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.002642 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.020229 B =10594.864516 C =11724.814096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.143 4.143 3 C 0.069 3.931 4 H 0.086 0.914 5 C 0.124 3.876 6 N -0.737 5.737 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 O -0.293 6.293 20 C 0.103 3.897 21 C -0.187 4.187 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.067 3.933 26 F -0.131 7.131 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.618 -7.720 0.860 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C 0.013 3.987 4 H 0.104 0.896 5 C 0.000 4.000 6 N -0.391 5.391 7 C 0.320 3.680 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 O -0.207 6.207 20 C 0.057 3.943 21 C -0.205 4.205 22 C -0.108 4.108 23 C -0.150 4.150 24 C -0.136 4.136 25 C 0.047 3.953 26 F -0.109 7.109 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.913 -9.347 0.892 28.504 hybrid contribution -0.976 2.559 0.207 2.746 sum -27.890 -6.788 1.100 28.725 Atomic orbital electron populations 1.21941 0.94993 1.02412 1.02096 1.21986 0.96882 0.94971 1.04219 1.22979 0.95375 0.94131 0.86239 0.89586 1.21433 0.89970 0.85072 1.03510 1.45890 1.07983 1.07746 1.77520 1.20302 0.81244 0.91393 0.75075 1.90702 1.54829 1.46143 1.47460 1.23530 1.06866 0.94988 1.05004 1.85372 0.92093 1.09841 1.95945 1.22833 0.95468 0.91578 1.58553 0.90977 1.24988 0.95023 0.99013 0.94530 1.70006 0.99395 1.34481 1.46449 0.86225 0.77345 0.83130 0.78805 1.19918 1.20806 1.19943 1.86282 1.35916 1.62498 1.35988 1.19026 0.87907 0.94038 0.93375 1.21295 0.97484 1.04445 0.97273 1.21016 0.95331 0.95826 0.98587 1.20937 1.00658 1.01449 0.91966 1.21060 0.93219 0.98968 1.00322 1.17047 0.93432 1.03780 0.81052 1.91531 1.77615 1.94628 1.47165 0.92394 0.92044 0.92309 0.89618 0.90128 0.90328 0.89396 0.76796 0.89241 0.89164 0.92131 0.84027 0.85082 0.84915 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.45 37.16 0.31 -0.67 16 2 C -0.14 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.07 0.60 2.25 -26.73 -0.06 0.54 16 4 H 0.09 0.60 5.38 -51.92 -0.28 0.32 16 5 C 0.12 1.44 5.37 -4.04 -0.02 1.41 16 6 N -0.74 -10.30 5.45 -60.29 -0.33 -10.63 16 7 C 0.53 10.22 7.85 -10.98 -0.09 10.13 16 8 O -0.52 -11.87 15.86 5.56 0.09 -11.78 16 9 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 15 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 O -0.29 -3.23 9.28 -19.61 -0.18 -3.41 16 20 C 0.10 1.02 5.33 -39.17 -0.21 0.81 16 21 C -0.19 -1.37 7.16 -39.45 -0.28 -1.66 16 22 C -0.09 -0.55 10.04 -39.60 -0.40 -0.95 16 23 C -0.13 -0.83 10.04 -39.57 -0.40 -1.23 16 24 C -0.12 -0.93 10.02 -39.54 -0.40 -1.32 16 25 C 0.07 0.71 7.31 -39.30 -0.29 0.42 16 26 F -0.13 -1.69 17.11 2.25 0.04 -1.65 16 27 H 0.06 0.30 6.80 -51.93 -0.35 -0.06 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.45 6.27 -51.93 -0.33 0.13 16 30 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 4.75 8.35 -40.82 -0.34 4.41 16 35 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 36 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.14 0.82 4.54 -52.49 -0.24 0.58 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -35.56 361.60 -8.30 -43.86 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.31 Total: 0.87 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.55 Total: -9.78 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.41 Total: -36.32 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.09 Total: -15.18 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.56 -8.30 -43.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177174379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.829 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds