Wall clock time and date at job start Tue Mar 31 2020 14:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47157 * 2 1 4 4 H 1.09011 * 109.47056 * 304.99756 * 3 2 1 5 5 C 1.53002 * 109.47367 * 185.00363 * 3 2 1 6 6 N 1.46500 * 109.47140 * 179.97438 * 5 3 2 7 7 C 1.34773 * 119.99497 * 179.97438 * 6 5 3 8 8 O 1.21277 * 120.00569 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99924 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47159 * 180.02562 * 9 7 6 11 11 C 1.76200 * 99.99854 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99831 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00113 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00041 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46710 * 60.00650 * 15 13 11 17 17 H 1.48499 * 109.46953 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47028 * 300.00416 * 15 13 11 19 19 O 1.42893 * 109.47239 * 65.00011 * 3 2 1 20 20 C 1.35958 * 116.99969 * 265.90574 * 19 3 2 21 21 C 1.38666 * 120.06484 * 357.64686 * 20 19 3 22 22 C 1.38178 * 119.96843 * 179.97438 * 21 20 19 23 23 C 1.38261 * 120.09810 * 359.72869 * 22 21 20 24 24 C 1.38257 * 120.12645 * 0.54669 * 23 22 21 25 25 C 1.38332 * 120.02660 * 359.45561 * 24 23 22 26 26 F 1.35100 * 120.04760 * 180.25140 * 25 24 23 27 27 H 1.09000 * 109.47689 * 60.00286 * 1 2 3 28 28 H 1.09003 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47323 * 299.99969 * 1 2 3 30 30 H 1.09008 * 109.46634 * 239.99810 * 2 1 3 31 31 H 1.08998 * 109.47050 * 120.00089 * 2 1 3 32 32 H 1.08999 * 109.46525 * 300.00187 * 5 3 2 33 33 H 1.08999 * 109.47056 * 59.99801 * 5 3 2 34 34 H 0.96997 * 120.00176 * 359.97438 * 6 5 3 35 35 H 1.09006 * 109.46551 * 300.00077 * 9 7 6 36 36 H 1.08998 * 109.47026 * 59.99780 * 9 7 6 37 37 H 0.97003 * 120.00244 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.01057 * 359.96152 * 21 20 19 39 39 H 1.08001 * 119.95071 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.93923 * 180.29910 * 23 22 21 41 41 H 1.07994 * 119.98837 * 179.72423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 4.0531 2.8256 -0.1264 7 6 5.3740 3.0732 -0.2278 8 8 6.1584 2.1528 -0.3190 9 6 5.8763 4.4941 -0.2290 10 16 7.6801 4.4962 -0.3777 11 6 7.9870 6.2311 -0.3547 12 1 7.1632 6.9241 -0.2671 13 6 9.2874 6.7072 -0.4482 14 7 10.2914 5.8627 -0.5545 15 14 9.6126 8.5466 -0.4245 16 1 9.1108 9.1216 0.8495 17 1 11.0727 8.7926 -0.5379 18 1 8.9128 9.1878 -1.5666 19 8 1.6620 2.0813 1.2210 20 6 0.5049 2.7951 1.2116 21 6 -0.2253 2.9192 0.0393 22 6 -1.4012 3.6447 0.0322 23 6 -1.8541 4.2426 1.1936 24 6 -1.1264 4.1262 2.3634 25 6 0.0516 3.4012 2.3765 26 9 0.7605 3.2829 3.5205 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.9994 0.9052 0.7160 33 1 3.8531 0.9570 -1.0572 34 1 3.4257 3.5618 -0.0539 35 1 5.4419 5.0322 -1.0717 36 1 5.5875 4.9824 0.7017 37 1 11.2002 6.1954 -0.6201 38 1 0.1252 2.4493 -0.8676 39 1 -1.9695 3.7416 -0.8811 40 1 -2.7761 4.8051 1.1863 41 1 -1.4799 4.5979 3.2683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177174379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:57 Heat of formation + Delta-G solvation = -121.299067 kcal Electronic energy + Delta-G solvation = -24857.486717 eV Core-core repulsion = 20970.542965 eV Total energy + Delta-G solvation = -3886.943753 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.81084 -41.57910 -40.50319 -38.72127 -36.04074 -34.60328 -34.50221 -31.84764 -31.47304 -30.76541 -28.95389 -27.65783 -24.88767 -24.23541 -23.45764 -22.00484 -21.45842 -19.87292 -19.76377 -18.18542 -17.86533 -17.67336 -17.17861 -17.07789 -16.88749 -16.66230 -16.21573 -15.97465 -15.79413 -15.48625 -15.02315 -14.74183 -14.60584 -14.52701 -14.36297 -13.85091 -13.77744 -13.47566 -13.18568 -13.06346 -13.01246 -12.87147 -12.66187 -12.60971 -12.34591 -12.21174 -11.88639 -11.72834 -11.43943 -11.14015 -11.00463 -10.31053 -10.21500 -9.88348 -9.16582 -8.68570 -8.35588 -6.14237 0.15737 0.29403 1.24458 1.43454 1.44936 1.54610 1.56067 1.96521 2.20775 2.26836 2.63213 2.98364 3.26320 3.29469 3.47608 3.64849 3.79250 3.88681 3.95261 3.98926 4.21698 4.24754 4.32379 4.35423 4.43373 4.46716 4.49178 4.65344 4.66608 4.80822 4.97980 5.05861 5.12758 5.14742 5.28659 5.31541 5.34670 5.40278 5.46784 5.73234 6.18455 6.31151 6.37950 7.05340 7.15269 8.73499 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.002642 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.020229 B =10594.864516 C =11724.814096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.076 3.924 4 H 0.110 0.890 5 C 0.121 3.879 6 N -0.713 5.713 7 C 0.535 3.465 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.549 4.549 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.260 1.260 19 O -0.320 6.320 20 C 0.087 3.913 21 C -0.185 4.185 22 C -0.083 4.083 23 C -0.128 4.128 24 C -0.121 4.121 25 C 0.026 3.974 26 F -0.156 7.156 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.412 0.588 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.747 -6.227 -0.549 32.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.020 3.980 4 H 0.127 0.873 5 C -0.003 4.003 6 N -0.366 5.366 7 C 0.321 3.679 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.080 5.920 11 C -0.697 4.697 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.185 1.185 19 O -0.234 6.234 20 C 0.041 3.959 21 C -0.203 4.203 22 C -0.100 4.100 23 C -0.146 4.146 24 C -0.139 4.139 25 C 0.006 3.994 26 F -0.135 7.135 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.248 0.752 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -30.112 -7.853 -0.511 31.124 hybrid contribution -0.183 2.037 0.648 2.145 sum -30.295 -5.816 0.137 30.849 Atomic orbital electron populations 1.21910 0.94057 1.02956 1.02093 1.21991 0.97604 0.93751 1.04456 1.22994 0.93028 0.95455 0.86497 0.87256 1.21635 0.92167 0.83121 1.03354 1.45660 1.06261 1.09584 1.75122 1.20026 0.82599 0.90116 0.75135 1.90689 1.56345 1.46947 1.50018 1.23372 1.01373 0.96867 1.06570 1.85528 0.99194 1.10950 1.96310 1.23177 0.96253 0.91611 1.58669 0.89998 1.26137 0.94599 1.04713 0.93649 1.70172 0.99949 1.37126 1.47480 0.84999 0.77444 0.76031 0.79487 1.18807 1.20261 1.18485 1.86239 1.36910 1.63138 1.37113 1.19209 0.88078 0.94508 0.94115 1.21526 0.97599 1.04402 0.96798 1.21455 0.94696 0.94184 0.99706 1.21338 1.01162 1.00849 0.91211 1.21320 0.92445 0.98433 1.01740 1.17570 0.94855 1.06144 0.80837 1.91454 1.78409 1.95069 1.48555 0.90653 0.91288 0.93936 0.87802 0.91530 0.92148 0.88296 0.75243 0.86978 0.87852 0.91923 0.82273 0.81914 0.82033 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.45 71.98 0.61 -0.97 16 2 C -0.14 -1.74 5.64 30.59 0.17 -1.57 16 3 C 0.08 1.20 2.25 30.59 0.07 1.27 16 4 H 0.11 1.19 5.38 -2.38 -0.01 1.18 16 5 C 0.12 2.70 5.37 86.38 0.46 3.16 16 6 N -0.71 -19.24 5.45 -463.06 -2.52 -21.77 16 7 C 0.54 20.49 7.85 87.66 0.69 21.18 16 8 O -0.56 -26.45 15.86 -3.02 -0.05 -26.49 16 9 C -0.13 -5.38 6.16 71.24 0.44 -4.95 16 10 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 11 C -0.55 -31.92 9.50 67.95 0.65 -31.28 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.80 5.49 84.86 0.47 1.27 16 14 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 15 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 19 O -0.32 -6.90 9.28 -93.07 -0.86 -7.77 16 20 C 0.09 1.64 5.33 22.53 0.12 1.76 16 21 C -0.19 -2.20 7.16 22.36 0.16 -2.04 16 22 C -0.08 -0.70 10.04 22.26 0.22 -0.48 16 23 C -0.13 -1.20 10.04 22.28 0.22 -0.98 16 24 C -0.12 -1.77 10.02 22.30 0.22 -1.55 16 25 C 0.03 0.54 7.31 22.45 0.16 0.71 16 26 F -0.16 -4.26 17.11 44.97 0.77 -3.49 16 27 H 0.07 0.51 6.80 -2.39 -0.02 0.49 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.04 0.60 6.27 -2.39 -0.01 0.58 16 30 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 9.10 8.35 -92.71 -0.77 8.32 16 35 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 36 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.16 1.21 4.54 -2.91 -0.01 1.20 16 39 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -81.00 361.60 3.44 -77.56 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.29 Total: 16.12 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 4.67 Total: -14.47 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.24 Total: -78.05 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.91 Total: -34.26 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.77 Total: -3.49 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -81.00 3.44 -77.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177174379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.740 kcal (2) G-P(sol) polarization free energy of solvation -81.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds