Wall clock time and date at job start Tue Mar 31 2020 14:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 H 1.09005 * 109.46752 * 55.00028 * 3 2 1 5 5 C 1.53005 * 109.47244 * 175.00064 * 3 2 1 6 6 N 1.46499 * 109.47048 * 185.00140 * 5 3 2 7 7 C 1.34776 * 120.00010 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00006 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.46959 * 180.02562 * 9 7 6 11 11 C 1.76200 * 99.99860 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00533 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00113 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00037 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46815 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47266 * 120.00104 * 15 13 11 18 18 H 1.48508 * 109.46962 * 240.00322 * 15 13 11 19 19 O 1.42901 * 109.47220 * 295.00693 * 3 2 1 20 20 C 1.35895 * 117.00092 * 99.34772 * 19 3 2 21 21 C 1.38764 * 120.04301 * 354.40165 * 20 19 3 22 22 C 1.38137 * 119.99301 * 179.97438 * 21 20 19 23 23 C 1.38251 * 120.08162 * 0.27406 * 22 21 20 24 24 C 1.38481 * 120.08356 * 359.44765 * 23 22 21 25 25 F 1.35097 * 119.99772 * 180.29649 * 24 23 22 26 26 C 1.38384 * 120.00058 * 0.55602 * 24 23 22 27 27 H 1.08993 * 109.47875 * 59.99753 * 1 2 3 28 28 H 1.09009 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47066 * 299.99131 * 1 2 3 30 30 H 1.09009 * 109.46692 * 240.00582 * 2 1 3 31 31 H 1.08992 * 109.47154 * 120.00433 * 2 1 3 32 32 H 1.08991 * 109.46864 * 305.00687 * 5 3 2 33 33 H 1.09001 * 109.46782 * 65.00244 * 5 3 2 34 34 H 0.97006 * 120.00118 * 0.02562 * 6 5 3 35 35 H 1.09001 * 109.46848 * 299.99445 * 9 7 6 36 36 H 1.09001 * 109.47614 * 59.99764 * 9 7 6 37 37 H 0.97001 * 119.99569 * 179.97438 * 14 13 11 38 38 H 1.07993 * 120.00432 * 359.95594 * 21 20 19 39 39 H 1.08001 * 119.95886 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.95663 * 179.72903 * 23 22 21 41 41 H 1.08002 * 120.03561 * 179.74379 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0432 2.8238 0.2458 7 6 5.3624 3.0713 0.3684 8 8 6.1533 2.1520 0.3798 9 6 5.8544 4.4903 0.4925 10 16 7.6584 4.4925 0.6396 11 6 7.9529 6.2252 0.7654 12 1 7.1242 6.9172 0.7390 13 6 9.2500 6.7007 0.8996 14 7 10.2602 5.8573 0.9322 15 14 9.5623 8.5376 1.0337 16 1 8.2694 9.2653 0.9704 17 1 10.2343 8.8325 2.3247 18 1 10.4314 8.9751 -0.0882 19 8 1.6618 2.0814 -1.2210 20 6 0.5656 2.8838 -1.1837 21 6 -0.1990 2.9621 -0.0283 22 6 -1.3127 3.7785 0.0086 23 6 -1.6703 4.5137 -1.1062 24 6 -0.9063 4.4425 -2.2590 25 9 -1.2539 5.1664 -3.3455 26 6 0.2101 3.6258 -2.2999 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8570 0.8800 1.0112 33 1 4.0029 0.9836 -0.7597 34 1 3.4105 3.5591 0.2371 35 1 5.5617 5.0550 -0.3926 36 1 5.4167 4.9505 1.3784 37 1 11.1667 6.1897 1.0256 38 1 0.0764 2.3847 0.8417 39 1 -1.9072 3.8393 0.9082 40 1 -2.5439 5.1480 -1.0765 41 1 0.8039 3.5666 -3.2001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177357463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:00 Heat of formation + Delta-G solvation = -100.101820 kcal Electronic energy + Delta-G solvation = -24585.251958 eV Core-core repulsion = 20699.227387 eV Total energy + Delta-G solvation = -3886.024571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.24432 -40.93732 -39.14808 -37.91009 -35.01877 -33.68837 -32.42691 -31.10802 -30.62093 -29.82026 -27.93857 -25.49482 -23.92372 -23.53245 -23.16721 -21.11355 -20.26551 -19.17205 -17.92220 -17.01904 -16.69673 -16.64061 -16.39455 -16.04329 -15.94070 -15.58158 -15.17590 -14.80474 -14.75299 -14.22269 -14.09202 -13.90990 -13.57344 -13.36974 -13.19386 -12.96685 -12.66967 -12.50752 -12.35389 -12.30675 -11.85379 -11.71311 -11.56173 -11.11562 -11.06828 -11.01932 -10.87580 -10.74722 -9.80796 -9.45034 -9.28470 -9.08071 -8.96042 -8.65345 -8.23720 -6.50117 -6.21841 -3.92290 0.72506 0.88865 2.60077 2.98287 3.07260 3.18454 3.21846 3.27895 3.32518 3.65824 3.96740 4.18643 4.20494 4.29774 4.41294 4.44376 4.60665 4.65504 4.76440 4.94305 4.98334 5.00458 5.13498 5.16699 5.24034 5.41654 5.51066 5.53110 5.56503 5.62399 5.68883 5.74813 5.77756 5.87983 5.89008 5.90928 6.13883 6.31725 6.51515 6.95951 7.59952 7.63313 8.35612 8.56631 9.23755 10.85652 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.002632 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.659460 B =10633.972296 C =12245.204078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C 0.069 3.931 4 H 0.088 0.912 5 C 0.122 3.878 6 N -0.738 5.738 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 O -0.297 6.297 20 C 0.165 3.835 21 C -0.224 4.224 22 C -0.050 4.050 23 C -0.195 4.195 24 C 0.140 3.860 25 F -0.134 7.134 26 C -0.192 4.192 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.221 -8.313 -1.587 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.179 4.179 3 C 0.013 3.987 4 H 0.106 0.894 5 C -0.002 4.002 6 N -0.393 5.393 7 C 0.320 3.680 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 O -0.210 6.210 20 C 0.118 3.882 21 C -0.243 4.243 22 C -0.068 4.068 23 C -0.214 4.214 24 C 0.120 3.880 25 F -0.113 7.113 26 C -0.211 4.211 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.566 -9.916 -1.761 27.478 hybrid contribution -1.156 2.713 0.003 2.949 sum -26.722 -7.202 -1.757 27.732 Atomic orbital electron populations 1.21930 0.94964 1.02412 1.02142 1.21952 0.96884 0.94809 1.04216 1.22991 0.95232 0.94280 0.86216 0.89427 1.21466 0.90326 0.84992 1.03461 1.45923 1.08024 1.07941 1.77378 1.20304 0.81262 0.91346 0.75108 1.90705 1.54320 1.46139 1.47898 1.23528 1.06956 0.95006 1.04908 1.85384 0.92138 1.10151 1.95662 1.22910 0.95507 0.91741 1.58140 0.90869 1.24999 0.95022 0.99021 0.94572 1.70031 0.99228 1.34349 1.46689 0.86113 0.78407 0.83030 0.77924 1.19605 1.20563 1.20554 1.86215 1.41693 1.57985 1.35077 1.18617 0.86717 0.89581 0.93249 1.21475 0.98753 1.05286 0.98760 1.20778 0.95196 0.93234 0.97568 1.21059 1.02541 1.04928 0.92863 1.17306 0.94495 0.92353 0.83824 1.91526 1.91500 1.75411 1.52850 1.20302 0.99689 1.00963 1.00150 0.92197 0.92048 0.92426 0.90108 0.89630 0.89420 0.90269 0.76853 0.89171 0.89223 0.92237 0.84223 0.84698 0.84664 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.48 37.16 0.32 -0.58 16 2 C -0.14 -0.89 5.64 -26.73 -0.15 -1.04 16 3 C 0.07 0.55 2.16 -26.73 -0.06 0.49 16 4 H 0.09 0.57 5.42 -51.93 -0.28 0.29 16 5 C 0.12 1.32 5.34 -4.04 -0.02 1.30 16 6 N -0.74 -9.78 5.50 -60.30 -0.33 -10.11 16 7 C 0.53 9.91 7.85 -10.99 -0.09 9.83 16 8 O -0.52 -11.60 15.86 5.56 0.09 -11.51 16 9 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 12 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 15 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 O -0.30 -2.86 9.53 -19.41 -0.18 -3.05 16 20 C 0.16 1.48 5.65 -39.23 -0.22 1.26 16 21 C -0.22 -1.60 7.36 -39.42 -0.29 -1.89 16 22 C -0.05 -0.32 10.04 -39.61 -0.40 -0.72 16 23 C -0.19 -1.48 10.02 -39.49 -0.40 -1.87 16 24 C 0.14 1.31 7.30 -39.44 -0.29 1.02 16 25 F -0.13 -1.39 17.27 2.25 0.04 -1.36 16 26 C -0.19 -1.85 9.97 -39.37 -0.39 -2.24 16 27 H 0.06 0.42 6.53 -51.93 -0.34 0.08 16 28 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.27 6.72 -51.93 -0.35 -0.08 16 30 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 4.40 8.47 -40.82 -0.35 4.06 16 35 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.14 0.77 4.27 -52.49 -0.22 0.55 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -34.62 362.48 -8.31 -42.93 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.31 Total: 0.84 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.57 Total: -10.34 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.40 Total: -35.60 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.10 Total: -14.56 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.62 -8.31 -42.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177357463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.174 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds