Wall clock time and date at job start Tue Mar 31 2020 14:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 H 1.09005 * 109.46752 * 55.00028 * 3 2 1 5 5 C 1.53005 * 109.47244 * 175.00064 * 3 2 1 6 6 N 1.46499 * 109.47048 * 185.00140 * 5 3 2 7 7 C 1.34776 * 120.00010 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00006 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.46959 * 180.02562 * 9 7 6 11 11 C 1.76200 * 99.99860 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00533 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00113 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00037 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46815 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47266 * 120.00104 * 15 13 11 18 18 H 1.48508 * 109.46962 * 240.00322 * 15 13 11 19 19 O 1.42901 * 109.47220 * 295.00693 * 3 2 1 20 20 C 1.35895 * 117.00092 * 99.34772 * 19 3 2 21 21 C 1.38764 * 120.04301 * 354.40165 * 20 19 3 22 22 C 1.38137 * 119.99301 * 179.97438 * 21 20 19 23 23 C 1.38251 * 120.08162 * 0.27406 * 22 21 20 24 24 C 1.38481 * 120.08356 * 359.44765 * 23 22 21 25 25 F 1.35097 * 119.99772 * 180.29649 * 24 23 22 26 26 C 1.38384 * 120.00058 * 0.55602 * 24 23 22 27 27 H 1.08993 * 109.47875 * 59.99753 * 1 2 3 28 28 H 1.09009 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47066 * 299.99131 * 1 2 3 30 30 H 1.09009 * 109.46692 * 240.00582 * 2 1 3 31 31 H 1.08992 * 109.47154 * 120.00433 * 2 1 3 32 32 H 1.08991 * 109.46864 * 305.00687 * 5 3 2 33 33 H 1.09001 * 109.46782 * 65.00244 * 5 3 2 34 34 H 0.97006 * 120.00118 * 0.02562 * 6 5 3 35 35 H 1.09001 * 109.46848 * 299.99445 * 9 7 6 36 36 H 1.09001 * 109.47614 * 59.99764 * 9 7 6 37 37 H 0.97001 * 119.99569 * 179.97438 * 14 13 11 38 38 H 1.07993 * 120.00432 * 359.95594 * 21 20 19 39 39 H 1.08001 * 119.95886 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.95663 * 179.72903 * 23 22 21 41 41 H 1.08002 * 120.03561 * 179.74379 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0432 2.8238 0.2458 7 6 5.3624 3.0713 0.3684 8 8 6.1533 2.1520 0.3798 9 6 5.8544 4.4903 0.4925 10 16 7.6584 4.4925 0.6396 11 6 7.9529 6.2252 0.7654 12 1 7.1242 6.9172 0.7390 13 6 9.2500 6.7007 0.8996 14 7 10.2602 5.8573 0.9322 15 14 9.5623 8.5376 1.0337 16 1 8.2694 9.2653 0.9704 17 1 10.2343 8.8325 2.3247 18 1 10.4314 8.9751 -0.0882 19 8 1.6618 2.0814 -1.2210 20 6 0.5656 2.8838 -1.1837 21 6 -0.1990 2.9621 -0.0283 22 6 -1.3127 3.7785 0.0086 23 6 -1.6703 4.5137 -1.1062 24 6 -0.9063 4.4425 -2.2590 25 9 -1.2539 5.1664 -3.3455 26 6 0.2101 3.6258 -2.2999 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8570 0.8800 1.0112 33 1 4.0029 0.9836 -0.7597 34 1 3.4105 3.5591 0.2371 35 1 5.5617 5.0550 -0.3926 36 1 5.4167 4.9505 1.3784 37 1 11.1667 6.1897 1.0256 38 1 0.0764 2.3847 0.8417 39 1 -1.9072 3.8393 0.9082 40 1 -2.5439 5.1480 -1.0765 41 1 0.8039 3.5666 -3.2001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177357463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:00 Heat of formation + Delta-G solvation = -122.619374 kcal Electronic energy + Delta-G solvation = -24586.228392 eV Core-core repulsion = 20699.227387 eV Total energy + Delta-G solvation = -3887.001005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97290 -41.62801 -40.49971 -38.60986 -36.01244 -34.59883 -34.51576 -31.71601 -31.63909 -30.78194 -28.95522 -27.65448 -24.72007 -24.14851 -23.76191 -21.99075 -21.42557 -19.91144 -19.76010 -18.02326 -17.66906 -17.41009 -17.28491 -16.92287 -16.87820 -16.83847 -16.51797 -16.32242 -15.85644 -15.40085 -14.91395 -14.74520 -14.55528 -14.53933 -14.42477 -13.95774 -13.71861 -13.44327 -13.16862 -13.15568 -12.92146 -12.88632 -12.83462 -12.61545 -12.32882 -12.11283 -11.79047 -11.66536 -11.43790 -11.16447 -10.97732 -10.28994 -10.19488 -9.91423 -9.27363 -8.67485 -8.35613 -6.13580 0.10970 0.28896 1.25792 1.41038 1.46022 1.57126 1.58222 1.95333 2.21516 2.27088 2.58912 2.98647 3.30176 3.33958 3.51520 3.70300 3.80964 3.83461 3.99268 4.03852 4.08966 4.19654 4.26653 4.37652 4.42793 4.48859 4.52113 4.60431 4.71259 4.84012 5.00404 5.07544 5.11324 5.15924 5.23750 5.34069 5.35247 5.39992 5.41560 5.71958 6.19379 6.33616 6.40312 7.05934 7.17855 8.73865 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.002632 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.659460 B =10633.972296 C =12245.204078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C 0.076 3.924 4 H 0.110 0.890 5 C 0.118 3.882 6 N -0.713 5.713 7 C 0.536 3.464 8 O -0.562 6.562 9 C -0.131 4.131 10 S -0.148 6.148 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.274 1.274 19 O -0.315 6.315 20 C 0.153 3.847 21 C -0.218 4.218 22 C -0.043 4.043 23 C -0.194 4.194 24 C 0.119 3.881 25 F -0.147 7.147 26 C -0.212 4.212 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.875 -7.340 -0.050 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.020 3.980 4 H 0.127 0.873 5 C -0.005 4.005 6 N -0.367 5.367 7 C 0.322 3.678 8 O -0.440 6.440 9 C -0.282 4.282 10 S 0.079 5.921 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.821 3.179 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.200 1.200 19 O -0.229 6.229 20 C 0.107 3.893 21 C -0.236 4.236 22 C -0.061 4.061 23 C -0.213 4.213 24 C 0.099 3.901 25 F -0.125 7.125 26 C -0.231 4.231 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.248 0.752 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.178 0.822 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.287 -8.941 -0.232 29.668 hybrid contribution -0.465 2.329 -0.495 2.426 sum -28.753 -6.612 -0.727 29.512 Atomic orbital electron populations 1.21910 0.94130 1.02955 1.02164 1.21958 0.97495 0.93561 1.04576 1.23005 0.92887 0.95603 0.86462 0.87274 1.21666 0.92512 0.83150 1.03194 1.45681 1.06254 1.09795 1.74941 1.20007 0.82663 0.90000 0.75174 1.90694 1.55891 1.46957 1.50473 1.23374 1.01325 0.96951 1.06561 1.85539 0.99413 1.11127 1.96020 1.23234 0.96211 0.91824 1.58155 0.90011 1.26129 0.94628 1.04586 0.93798 1.70188 0.99828 1.36971 1.47741 0.84903 0.78769 0.76140 0.78115 1.18105 1.19766 1.19989 1.86190 1.42296 1.58396 1.36022 1.18699 0.87044 0.89724 0.93792 1.21725 0.98357 1.05043 0.98463 1.21184 0.94875 0.91841 0.98180 1.21356 1.02608 1.04965 0.92364 1.17563 0.95201 0.92959 0.84349 1.91489 1.91642 1.75787 1.53623 1.20354 1.00254 1.02059 1.00446 0.93618 0.91353 0.90842 0.91140 0.87981 0.88516 0.91892 0.75187 0.87721 0.87030 0.91960 0.82167 0.81361 0.82961 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.48 71.98 0.61 -0.73 16 2 C -0.14 -1.43 5.64 30.59 0.17 -1.26 16 3 C 0.08 1.03 2.16 30.60 0.07 1.10 16 4 H 0.11 1.01 5.42 -2.38 -0.01 1.00 16 5 C 0.12 2.41 5.34 86.38 0.46 2.87 16 6 N -0.71 -17.78 5.50 -463.07 -2.55 -20.33 16 7 C 0.54 19.66 7.85 87.66 0.69 20.34 16 8 O -0.56 -25.70 15.86 -3.03 -0.05 -25.75 16 9 C -0.13 -5.23 6.16 71.23 0.44 -4.79 16 10 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 11 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 15 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 O -0.32 -5.72 9.53 -92.37 -0.88 -6.60 16 20 C 0.15 2.54 5.65 22.50 0.13 2.67 16 21 C -0.22 -2.41 7.36 22.37 0.16 -2.24 16 22 C -0.04 -0.40 10.04 22.25 0.22 -0.18 16 23 C -0.19 -2.51 10.02 22.33 0.22 -2.28 16 24 C 0.12 2.17 7.30 22.36 0.16 2.33 16 25 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 26 C -0.21 -4.09 9.97 22.41 0.22 -3.87 16 27 H 0.04 0.54 6.53 -2.39 -0.02 0.53 16 28 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.40 6.72 -2.38 -0.02 0.39 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.41 8.11 8.47 -92.70 -0.79 7.32 16 35 H 0.10 3.87 8.14 -2.40 -0.02 3.85 16 36 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.16 1.05 4.27 -2.91 -0.01 1.03 16 39 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 40 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -78.01 362.48 3.40 -74.60 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.28 Total: 15.32 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.67 Total: -15.54 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -2.26 Total: -76.12 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.93 Total: -32.35 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -78.01 3.40 -74.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177357463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.019 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds