Wall clock time and date at job start Tue Mar 31 2020 15:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99424 * 2 1 4 4 C 1.52997 * 109.47497 * 293.95608 * 3 2 1 5 5 C 1.53003 * 109.47436 * 180.02562 * 4 3 2 6 6 S 1.80997 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.76204 * 99.99698 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00172 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99718 * 180.02562 * 7 6 5 10 10 N 1.31630 * 120.00120 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99702 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47146 * 90.00063 * 11 9 7 13 13 H 1.48507 * 109.46893 * 210.00091 * 11 9 7 14 14 H 1.48499 * 109.47250 * 330.00056 * 11 9 7 15 15 C 1.46901 * 111.00164 * 123.95382 * 2 1 3 16 16 C 1.50693 * 109.47201 * 66.05032 * 15 2 1 17 17 C 1.38233 * 120.00207 * 89.99355 * 16 15 2 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 S 1.76203 * 120.00235 * 179.97438 * 19 18 17 21 21 C 1.81397 * 102.99972 * 90.00017 * 20 19 18 22 22 O 1.42102 * 103.00006 * 203.85082 * 20 19 18 23 23 C 1.38238 * 119.99693 * 0.02562 * 19 18 17 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 19 18 25 25 H 1.09002 * 109.47230 * 296.03785 * 1 2 3 26 26 H 1.08995 * 109.47474 * 56.04760 * 1 2 3 27 27 H 1.09004 * 109.46478 * 176.04551 * 1 2 3 28 28 H 1.09001 * 109.47370 * 53.96001 * 3 2 1 29 29 H 1.09009 * 109.47154 * 173.95232 * 3 2 1 30 30 H 1.09002 * 109.46747 * 299.99866 * 4 3 2 31 31 H 1.08995 * 109.47109 * 59.99847 * 4 3 2 32 32 H 1.09005 * 109.46638 * 300.00001 * 5 4 3 33 33 H 1.09003 * 109.46830 * 59.99425 * 5 4 3 34 34 H 0.96996 * 119.99847 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47084 * 306.05037 * 15 2 1 36 36 H 1.09001 * 109.46701 * 186.04772 * 15 2 1 37 37 H 1.08002 * 120.00157 * 0.02562 * 17 16 15 38 38 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 39 39 H 1.09002 * 109.47402 * 59.99896 * 21 20 19 40 40 H 1.08995 * 109.47434 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47284 * 300.00456 * 21 20 19 42 42 H 1.08001 * 119.99658 * 179.97438 * 23 19 18 43 43 H 1.07999 * 119.99990 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1800 3.4858 -1.3184 6 16 1.7499 4.2971 -2.8782 7 6 2.4825 5.8775 -2.6131 8 1 3.0008 6.0842 -1.6884 9 6 2.3924 6.8572 -3.5922 10 7 1.7602 6.6054 -4.7190 11 14 3.1683 8.5330 -3.3109 12 1 4.5688 8.5191 -3.8044 13 1 2.3948 9.5662 -4.0453 14 1 3.1582 8.8457 -1.8592 15 6 1.9955 -0.7660 1.1376 16 6 1.6371 -2.2204 0.9728 17 6 2.4941 -3.0715 0.3005 18 6 2.1680 -4.4069 0.1543 19 6 0.9824 -4.8900 0.6758 20 16 0.5664 -6.5920 0.4889 21 6 1.2893 -7.3535 1.9680 22 8 -0.8501 -6.5891 0.6019 23 6 0.1226 -4.0375 1.3429 24 6 0.4489 -2.7022 1.4894 25 1 -0.3634 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3632 -1.0253 -0.0709 28 1 1.5610 1.9273 0.8310 29 1 3.0797 1.3445 0.1083 30 1 2.0657 1.5017 -2.1491 31 1 0.5471 2.0845 -1.4264 32 1 1.7460 4.0418 -0.4874 33 1 3.2643 3.4584 -1.2103 34 1 1.6969 7.2902 -5.4030 35 1 1.5611 -0.3873 2.0628 36 1 3.0798 -0.6610 1.1755 37 1 3.4207 -2.6943 -0.1064 38 1 2.8396 -5.0729 -0.3670 39 1 0.8459 -6.9093 2.8592 40 1 1.0910 -8.4252 1.9588 41 1 2.3660 -7.1837 1.9749 42 1 -0.8039 -4.4149 1.7500 43 1 -0.2226 -2.0363 2.0110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178417207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:52 Heat of formation + Delta-G solvation = -18.978819 kcal Electronic energy + Delta-G solvation = -21807.882514 eV Core-core repulsion = 18491.588877 eV Total energy + Delta-G solvation = -3316.293638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80833 -37.58751 -36.08045 -33.48531 -32.42436 -31.39822 -31.23684 -29.23284 -27.51480 -26.56106 -25.49728 -23.28888 -23.01652 -21.26691 -20.59562 -18.46587 -17.47166 -16.97273 -16.06623 -15.89378 -15.74991 -15.25122 -15.12416 -14.80120 -14.61739 -14.22753 -14.18196 -13.98068 -13.68012 -13.63356 -13.09127 -12.90191 -12.82657 -12.44023 -12.17783 -12.01969 -11.95486 -11.77435 -11.41327 -11.34273 -11.25316 -11.06268 -10.78796 -10.64345 -10.54982 -10.29170 -9.57295 -9.36350 -9.21953 -9.05400 -8.75272 -8.40692 -8.28939 -6.51916 -6.22225 -3.92383 0.55682 1.10331 1.51537 2.31577 3.20091 3.21897 3.25727 3.29330 3.53193 3.59790 4.03829 4.23214 4.44988 4.53104 4.68179 4.74131 4.81501 4.95385 5.06939 5.12748 5.14171 5.20189 5.30984 5.33225 5.42053 5.50293 5.52050 5.55592 5.63281 5.73182 5.74785 5.85147 5.94902 5.95771 5.97304 6.06569 6.27711 6.35338 6.58481 6.63075 6.74211 6.95622 7.00628 7.60890 8.37043 9.23954 10.85947 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.039420 B = 0.001671 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.124509 B =16751.061817 C =16894.648193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.060 3.940 4 C -0.093 4.093 5 C -0.113 4.113 6 S -0.132 6.132 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.869 5.869 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.085 3.915 16 C -0.035 4.035 17 C -0.115 4.115 18 C -0.045 4.045 19 C -0.464 4.464 20 S 1.332 4.668 21 C -0.499 4.499 22 O -0.859 6.859 23 C -0.055 4.055 24 C -0.129 4.129 25 H 0.024 0.976 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.267 0.733 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -27.843 12.805 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.257 5.257 3 C -0.069 4.069 4 C -0.132 4.132 5 C -0.262 4.262 6 S 0.097 5.903 7 C -0.665 4.665 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C -0.042 4.042 16 C -0.036 4.036 17 C -0.135 4.135 18 C -0.064 4.064 19 C -0.562 4.562 20 S 1.529 4.471 21 C -0.655 4.655 22 O -0.854 6.854 23 C -0.074 4.074 24 C -0.149 4.149 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.856 -28.808 10.589 30.749 hybrid contribution 0.091 3.084 3.958 5.018 sum 1.947 -25.724 14.547 29.617 Atomic orbital electron populations 1.22555 0.87313 1.02288 1.01078 1.62007 1.08237 1.14236 1.41260 1.22231 0.99941 0.86690 0.98031 1.21282 1.01345 0.94040 0.96544 1.23235 1.02268 0.97499 1.03200 1.84646 1.74386 1.13288 1.18013 1.22696 1.40578 0.97536 1.05700 0.91001 1.25015 0.95219 0.99017 0.94550 1.70022 1.39975 1.34383 1.06112 0.86170 0.79097 0.81864 0.78417 1.20257 1.20754 1.19741 1.21157 1.00901 0.89576 0.92579 1.19999 0.93762 0.95233 0.94606 1.21176 1.00261 0.93333 0.98698 1.20838 0.94084 0.95686 0.95806 1.27578 1.01892 1.17845 1.08841 1.69485 0.91268 0.84655 1.01707 1.27777 1.10368 1.09612 1.17779 1.93113 1.26385 1.83321 1.82610 1.21041 0.97890 0.93515 0.94936 1.21162 0.96797 0.95602 1.01299 0.95759 0.90334 0.91376 0.94868 0.90738 0.90698 0.91611 0.92406 0.92131 0.92310 0.93877 0.89517 0.85084 0.84570 0.90118 0.87720 0.87079 0.85810 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.93 60.07 0.54 0.72 16 2 N -0.53 -6.46 4.75 -244.37 -1.16 -7.62 16 3 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 4 C -0.09 -1.53 5.15 -26.73 -0.14 -1.67 16 5 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 6 S -0.13 -3.47 21.44 -107.50 -2.30 -5.77 16 7 C -0.52 -14.91 9.50 30.94 0.29 -14.61 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 10 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 11 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.09 0.85 5.12 -4.98 -0.03 0.82 16 16 C -0.04 -0.35 4.89 -104.63 -0.51 -0.86 16 17 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 18 C -0.04 -0.30 9.75 -39.58 -0.39 -0.69 16 19 C -0.46 -3.78 5.61 -39.58 -0.22 -4.00 16 20 S 1.33 7.68 14.19 -107.50 -1.53 6.15 16 21 C -0.50 -2.29 10.70 101.05 1.08 -1.21 16 22 O -0.86 -10.88 16.90 -35.23 -0.60 -11.48 16 23 C -0.05 -0.57 9.44 -39.58 -0.37 -0.94 16 24 C -0.13 -1.30 7.95 -39.58 -0.31 -1.62 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 1.00 6.30 -51.93 -0.33 0.67 16 27 H 0.07 0.78 6.15 -51.93 -0.32 0.46 16 28 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.07 0.93 7.93 -51.92 -0.41 0.52 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.10 6.47 -51.93 -0.34 0.76 16 32 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 33 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.04 0.41 8.07 -51.93 -0.42 0.00 16 36 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.27 8.14 -51.92 -0.42 -0.15 16 42 H 0.12 1.39 7.45 -52.49 -0.39 1.00 16 43 H 0.12 1.12 8.02 -52.49 -0.42 0.70 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -37.44 379.86 -11.31 -48.74 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.80 Total: -2.19 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.35 Total: -24.76 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: -0.43 Total: -32.98 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.60 Total: -11.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -3.83 Total: 0.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.44 -11.31 -48.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178417207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.766 kcal (2) G-P(sol) polarization free energy of solvation -37.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds