Wall clock time and date at job start Tue Mar 31 2020 15:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99424 * 2 1 4 4 C 1.52997 * 109.47497 * 293.95608 * 3 2 1 5 5 C 1.53003 * 109.47436 * 180.02562 * 4 3 2 6 6 S 1.80997 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.76204 * 99.99698 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00172 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99718 * 180.02562 * 7 6 5 10 10 N 1.31630 * 120.00120 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99702 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47146 * 90.00063 * 11 9 7 13 13 H 1.48507 * 109.46893 * 210.00091 * 11 9 7 14 14 H 1.48499 * 109.47250 * 330.00056 * 11 9 7 15 15 C 1.46901 * 111.00164 * 123.95382 * 2 1 3 16 16 C 1.50693 * 109.47201 * 66.05032 * 15 2 1 17 17 C 1.38233 * 120.00207 * 89.99355 * 16 15 2 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 S 1.76203 * 120.00235 * 179.97438 * 19 18 17 21 21 C 1.81397 * 102.99972 * 90.00017 * 20 19 18 22 22 O 1.42102 * 103.00006 * 203.85082 * 20 19 18 23 23 C 1.38238 * 119.99693 * 0.02562 * 19 18 17 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 19 18 25 25 H 1.09002 * 109.47230 * 296.03785 * 1 2 3 26 26 H 1.08995 * 109.47474 * 56.04760 * 1 2 3 27 27 H 1.09004 * 109.46478 * 176.04551 * 1 2 3 28 28 H 1.09001 * 109.47370 * 53.96001 * 3 2 1 29 29 H 1.09009 * 109.47154 * 173.95232 * 3 2 1 30 30 H 1.09002 * 109.46747 * 299.99866 * 4 3 2 31 31 H 1.08995 * 109.47109 * 59.99847 * 4 3 2 32 32 H 1.09005 * 109.46638 * 300.00001 * 5 4 3 33 33 H 1.09003 * 109.46830 * 59.99425 * 5 4 3 34 34 H 0.96996 * 119.99847 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47084 * 306.05037 * 15 2 1 36 36 H 1.09001 * 109.46701 * 186.04772 * 15 2 1 37 37 H 1.08002 * 120.00157 * 0.02562 * 17 16 15 38 38 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 39 39 H 1.09002 * 109.47402 * 59.99896 * 21 20 19 40 40 H 1.08995 * 109.47434 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47284 * 300.00456 * 21 20 19 42 42 H 1.08001 * 119.99658 * 179.97438 * 23 19 18 43 43 H 1.07999 * 119.99990 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1800 3.4858 -1.3184 6 16 1.7499 4.2971 -2.8782 7 6 2.4825 5.8775 -2.6131 8 1 3.0008 6.0842 -1.6884 9 6 2.3924 6.8572 -3.5922 10 7 1.7602 6.6054 -4.7190 11 14 3.1683 8.5330 -3.3109 12 1 4.5688 8.5191 -3.8044 13 1 2.3948 9.5662 -4.0453 14 1 3.1582 8.8457 -1.8592 15 6 1.9955 -0.7660 1.1376 16 6 1.6371 -2.2204 0.9728 17 6 2.4941 -3.0715 0.3005 18 6 2.1680 -4.4069 0.1543 19 6 0.9824 -4.8900 0.6758 20 16 0.5664 -6.5920 0.4889 21 6 1.2893 -7.3535 1.9680 22 8 -0.8501 -6.5891 0.6019 23 6 0.1226 -4.0375 1.3429 24 6 0.4489 -2.7022 1.4894 25 1 -0.3634 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3632 -1.0253 -0.0709 28 1 1.5610 1.9273 0.8310 29 1 3.0797 1.3445 0.1083 30 1 2.0657 1.5017 -2.1491 31 1 0.5471 2.0845 -1.4264 32 1 1.7460 4.0418 -0.4874 33 1 3.2643 3.4584 -1.2103 34 1 1.6969 7.2902 -5.4030 35 1 1.5611 -0.3873 2.0628 36 1 3.0798 -0.6610 1.1755 37 1 3.4207 -2.6943 -0.1064 38 1 2.8396 -5.0729 -0.3670 39 1 0.8459 -6.9093 2.8592 40 1 1.0910 -8.4252 1.9588 41 1 2.3660 -7.1837 1.9749 42 1 -0.8039 -4.4149 1.7500 43 1 -0.2226 -2.0363 2.0110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178417207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:51 Heat of formation + Delta-G solvation = -44.492719 kcal Electronic energy + Delta-G solvation = -21808.988880 eV Core-core repulsion = 18491.588877 eV Total energy + Delta-G solvation = -3317.400003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51740 -38.52413 -36.87001 -34.70209 -34.53399 -32.29142 -31.92032 -29.64377 -28.41093 -28.00983 -27.33085 -24.36755 -23.68362 -22.16377 -21.70954 -19.55933 -19.05400 -17.60084 -16.97758 -16.92044 -16.89517 -16.50964 -16.22901 -15.89884 -15.74798 -15.35454 -15.23993 -14.84107 -14.57720 -14.42279 -14.25255 -13.74868 -13.60984 -13.46948 -13.31968 -13.21920 -13.00745 -12.90726 -12.79602 -12.71577 -12.53972 -12.36294 -12.22394 -11.96984 -11.63603 -11.39349 -11.23365 -11.13928 -10.31369 -10.08523 -9.88236 -9.40699 -9.27611 -8.66529 -8.37147 -6.13569 -0.07870 0.43532 0.98936 1.31419 1.39500 1.48758 1.74261 1.81685 2.28469 2.56585 2.97001 2.97776 3.12701 3.33733 3.75705 3.80614 3.96959 4.05745 4.13610 4.21959 4.30941 4.33691 4.41440 4.47178 4.48409 4.51684 4.58776 4.66184 4.71107 4.74297 4.81757 4.89486 4.99337 5.08995 5.17683 5.17838 5.28171 5.31460 5.32556 5.39729 5.60351 5.97379 6.00305 6.05118 6.18184 7.04928 8.72265 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.039420 B = 0.001671 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.124509 B =16751.061817 C =16894.648193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.071 3.929 4 C -0.082 4.082 5 C -0.087 4.087 6 S -0.200 6.200 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.014 3.986 10 N -0.907 5.907 11 Si 0.995 3.005 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.263 1.263 15 C 0.088 3.912 16 C -0.050 4.050 17 C -0.122 4.122 18 C -0.035 4.035 19 C -0.472 4.472 20 S 1.395 4.605 21 C -0.496 4.496 22 O -0.931 6.931 23 C -0.083 4.083 24 C -0.140 4.140 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.271 0.729 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.187 0.813 39 H 0.058 0.942 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 -28.700 13.642 32.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.058 4.058 4 C -0.121 4.121 5 C -0.236 4.236 6 S 0.029 5.971 7 C -0.686 4.686 8 H 0.091 0.909 9 C -0.190 4.190 10 N -0.544 5.544 11 Si 0.817 3.183 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.188 1.188 15 C -0.039 4.039 16 C -0.050 4.050 17 C -0.142 4.142 18 C -0.054 4.054 19 C -0.568 4.568 20 S 1.593 4.407 21 C -0.654 4.654 22 O -0.927 6.927 23 C -0.102 4.102 24 C -0.160 4.160 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.424 -29.667 11.426 32.098 hybrid contribution -0.673 3.190 3.761 4.977 sum 3.751 -26.477 15.186 30.753 Atomic orbital electron populations 1.22495 0.87546 1.02148 1.00752 1.61950 1.08131 1.13570 1.42752 1.22040 1.00830 0.87194 0.95772 1.21157 1.00638 0.91868 0.98416 1.23153 1.02691 0.98762 0.99033 1.84681 1.75125 1.13997 1.23322 1.23051 1.40954 0.98590 1.06055 0.90860 1.26083 0.95504 1.03409 0.94046 1.70159 1.41178 1.35942 1.07112 0.85007 0.78326 0.76248 0.78763 1.19147 1.19980 1.18759 1.21189 1.01643 0.89367 0.91673 1.20060 0.94008 0.95396 0.95556 1.21536 1.00593 0.93967 0.98056 1.21398 0.93745 0.95833 0.94394 1.27869 1.02102 1.18634 1.08211 1.68581 0.88143 0.82420 1.01538 1.27749 1.12022 1.10158 1.15422 1.92986 1.30902 1.84194 1.84644 1.21049 0.98119 0.94347 0.96709 1.21179 0.97334 0.95558 1.01940 0.95228 0.91612 0.91311 0.94479 0.89307 0.91446 0.92290 0.92191 0.91503 0.91976 0.93681 0.87999 0.83332 0.79579 0.92212 0.86161 0.83892 0.87942 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.93 127.69 1.14 1.58 16 2 N -0.54 -12.31 4.75 -927.04 -4.41 -16.72 16 3 C 0.07 1.74 4.96 86.30 0.43 2.17 16 4 C -0.08 -2.63 5.15 30.59 0.16 -2.48 16 5 C -0.09 -3.47 5.67 71.98 0.41 -3.06 16 6 S -0.20 -10.74 21.44 -56.49 -1.21 -11.95 16 7 C -0.54 -31.28 9.50 67.95 0.65 -30.64 16 8 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 9 C 0.01 0.83 5.49 84.86 0.47 1.29 16 10 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 11 Si 0.99 43.98 29.55 68.60 2.03 46.00 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 C 0.09 1.60 5.12 85.55 0.44 2.04 16 16 C -0.05 -0.91 4.89 -19.87 -0.10 -1.00 16 17 C -0.12 -1.72 9.70 22.27 0.22 -1.51 16 18 C -0.04 -0.36 9.75 22.27 0.22 -0.14 16 19 C -0.47 -7.07 5.61 22.27 0.12 -6.95 16 20 S 1.39 14.30 14.19 -56.49 -0.80 13.50 16 21 C -0.50 -3.38 10.70 113.37 1.21 -2.16 16 22 O -0.93 -24.27 16.90 -148.98 -2.52 -26.79 16 23 C -0.08 -1.78 9.44 22.27 0.21 -1.57 16 24 C -0.14 -2.87 7.95 22.27 0.18 -2.70 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.69 6.30 -2.39 -0.02 1.67 16 27 H 0.07 1.60 6.15 -2.38 -0.01 1.58 16 28 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.09 1.96 7.93 -2.38 -0.02 1.94 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 1.98 6.47 -2.39 -0.02 1.96 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.04 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.10 1.53 7.87 -2.39 -0.02 1.51 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.19 -0.08 8.06 -2.91 -0.02 -0.11 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.10 2.55 7.45 -2.91 -0.02 2.53 16 43 H 0.12 2.31 8.02 -2.91 -0.02 2.29 16 Total: -1.00 -83.82 379.86 0.10 -83.72 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.98 Total: 12.22 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 5.75 Total: -45.13 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -4.12 Total: -71.57 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -2.52 Total: -26.79 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.01 Total: 1.55 kcal Total: -83.82 0.10 -83.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178417207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.227 kcal (2) G-P(sol) polarization free energy of solvation -83.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds