Wall clock time and date at job start Tue Mar 31 2020 15:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21321 * 119.99718 * 2 1 4 4 C 1.46600 * 120.00297 * 180.02562 * 2 1 3 5 5 C 1.40088 * 120.20622 * 4.74931 * 4 2 1 6 6 C 1.37545 * 119.92285 * 179.97438 * 5 4 2 7 7 C 1.38970 * 120.34435 * 359.97438 * 6 5 4 8 8 F 1.35101 * 119.78841 * 180.02562 * 7 6 5 9 9 C 1.38310 * 120.42191 * 359.79165 * 7 6 5 10 10 C 1.38725 * 120.06623 * 0.46030 * 9 7 6 11 11 N 1.39057 * 120.17067 * 179.78882 * 10 9 7 12 12 C 1.34771 * 120.00460 * 324.39841 * 11 10 9 13 13 O 1.21548 * 120.00025 * 3.86093 * 12 11 10 14 14 C 1.47843 * 120.00312 * 183.86235 * 12 11 10 15 15 C 1.39937 * 120.02441 * 359.73041 * 14 12 11 16 16 C 1.38324 * 120.35594 * 179.69578 * 15 14 12 17 17 C 1.37761 * 120.40890 * 0.59889 * 16 15 14 18 18 C 1.40756 * 120.04610 * 359.67751 * 17 16 15 19 19 C 1.41442 * 120.17534 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00103 * 325.29638 * 19 18 17 21 21 C 1.39937 * 119.99788 * 145.29480 * 19 18 17 22 22 N 1.30830 * 119.99803 * 4.28916 * 21 19 18 23 23 Si 1.86799 * 119.99767 * 184.29109 * 21 19 18 24 24 H 1.48505 * 109.47230 * 60.00050 * 23 21 19 25 25 H 1.48501 * 109.47045 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47251 * 300.00003 * 23 21 19 27 27 C 1.39013 * 120.02625 * 179.97438 * 14 12 11 28 28 H 1.09001 * 109.47451 * 269.99513 * 1 2 3 29 29 H 1.09004 * 109.47471 * 30.00021 * 1 2 3 30 30 H 1.09009 * 109.46964 * 149.99638 * 1 2 3 31 31 H 1.07997 * 120.03827 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.82714 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.97239 * 180.23229 * 9 7 6 34 34 H 0.97006 * 119.99398 * 144.11861 * 11 10 9 35 35 H 1.07999 * 119.82424 * 359.97438 * 15 14 12 36 36 H 1.07996 * 119.79481 * 180.29969 * 16 15 14 37 37 H 1.08002 * 119.97369 * 179.70343 * 17 16 15 38 38 H 0.97004 * 119.99592 * 180.02562 * 22 21 19 39 39 H 1.08004 * 120.20590 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2400 -1.2696 -0.0006 5 6 1.5476 -2.4832 -0.1013 6 6 2.2413 -3.6709 -0.1018 7 6 3.6275 -3.6744 -0.0033 8 9 4.2976 -4.8475 -0.0054 9 6 4.3258 -2.4843 0.0920 10 6 3.6433 -1.2766 0.0994 11 7 4.3429 -0.0790 0.1995 12 6 5.4539 -0.0091 0.9592 13 8 5.8842 -1.0089 1.5003 14 6 6.1495 1.2837 1.1345 15 6 5.6578 2.4340 0.5072 16 6 6.2996 3.6483 0.6716 17 6 7.4366 3.7371 1.4443 18 6 7.9492 2.5898 2.0784 19 6 9.1161 2.6780 2.8728 20 1 9.9059 3.3616 2.5983 21 6 9.2473 1.8794 4.0144 22 7 8.3298 0.9918 4.3008 23 14 10.7325 2.0808 5.1294 24 1 10.7716 3.4688 5.6560 25 1 10.6346 1.1249 6.2616 26 1 11.9715 1.8092 4.3574 27 6 7.2952 1.3565 1.9183 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4705 -2.4862 -0.1794 32 1 1.7060 -4.6056 -0.1800 33 1 5.4033 -2.4953 0.1644 34 1 4.0335 0.7050 -0.2807 35 1 4.7701 2.3742 -0.1048 36 1 5.9095 4.5312 0.1873 37 1 7.9347 4.6879 1.5640 38 1 8.4206 0.4386 5.0924 39 1 7.6802 0.4706 2.4015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184839624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:39 Heat of formation + Delta-G solvation = -66.662296 kcal Electronic energy + Delta-G solvation = -26553.084705 eV Core-core repulsion = 22533.066229 eV Total energy + Delta-G solvation = -4020.018476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.03465 -40.83406 -39.16918 -37.98043 -37.04513 -34.58415 -33.65798 -31.98466 -30.81322 -29.60533 -29.44066 -28.96265 -25.36887 -23.92142 -23.85926 -21.91635 -20.95849 -20.38357 -19.64914 -18.25816 -17.76577 -16.88010 -16.61122 -16.04920 -15.82184 -15.63594 -15.19798 -15.02662 -14.88877 -14.67033 -14.54388 -14.00982 -13.92147 -13.27262 -13.24610 -13.12044 -12.73647 -12.59389 -12.57299 -12.44265 -12.15586 -11.73497 -11.61829 -11.16301 -11.09996 -10.76158 -10.52729 -10.38555 -10.10195 -9.83282 -9.76590 -9.33980 -9.18788 -8.92129 -8.27666 -7.70834 -7.44247 -6.66715 -4.48091 0.37388 1.06612 2.06198 2.18648 2.80288 3.08238 3.10179 3.13189 3.26583 3.40451 3.75843 3.86217 3.94881 4.12080 4.47498 4.66045 4.77547 4.84538 5.04575 5.13656 5.16524 5.25536 5.49519 5.56371 5.67320 5.70750 5.88028 5.94267 6.03658 6.15064 6.23893 6.43332 6.63918 6.83712 6.92810 6.96979 7.22841 7.32897 7.36400 7.61724 7.64466 7.82950 7.96731 8.15126 8.47736 8.60446 8.79990 8.83474 10.24341 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.003466 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.152510 B = 8077.133202 C = 9478.412397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.398 3.602 3 O -0.459 6.459 4 C -0.231 4.231 5 C -0.024 4.024 6 C -0.196 4.196 7 C 0.155 3.845 8 F -0.132 7.132 9 C -0.181 4.181 10 C 0.257 3.743 11 N -0.666 5.666 12 C 0.564 3.436 13 O -0.520 6.520 14 C -0.139 4.139 15 C -0.197 4.197 16 C -0.106 4.106 17 C -0.192 4.192 18 C 0.092 3.908 19 C -0.465 4.465 20 H 0.079 0.921 21 C 0.069 3.931 22 N -0.804 5.804 23 Si 0.918 3.082 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.265 1.265 27 C -0.076 4.076 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.425 0.575 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.282 0.718 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 -6.492 -8.270 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.278 3.722 3 O -0.335 6.335 4 C -0.235 4.235 5 C -0.043 4.043 6 C -0.216 4.216 7 C 0.134 3.866 8 F -0.110 7.110 9 C -0.202 4.202 10 C 0.156 3.844 11 N -0.315 5.315 12 C 0.358 3.642 13 O -0.396 6.396 14 C -0.142 4.142 15 C -0.217 4.217 16 C -0.125 4.125 17 C -0.212 4.212 18 C 0.090 3.910 19 C -0.495 4.495 20 H 0.097 0.903 21 C -0.147 4.147 22 N -0.430 5.430 23 Si 0.743 3.257 24 H -0.190 1.190 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.096 4.096 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.178 0.822 34 H 0.270 0.730 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.169 -6.758 -7.667 17.470 hybrid contribution 0.427 0.093 0.449 0.627 sum -13.741 -6.664 -7.218 16.892 Atomic orbital electron populations 1.22199 0.93429 1.04815 1.04892 1.22213 0.91813 0.87136 0.71083 1.90463 1.71484 1.34314 1.37266 1.20371 0.92136 0.95967 1.15005 1.21052 0.99882 0.89900 0.93432 1.20967 0.92089 0.99817 1.08713 1.17785 0.90041 0.80981 0.97748 1.91526 1.80789 1.45492 1.93219 1.21351 1.02973 0.89796 1.06108 1.17673 0.89281 0.86735 0.90687 1.44020 1.27138 1.11967 1.48410 1.19172 0.78529 0.90207 0.76340 1.90712 1.64641 1.37107 1.47144 1.19381 0.99395 0.90556 1.04909 1.20525 1.01855 0.93129 1.06186 1.20478 0.96515 0.95887 0.99584 1.21311 0.97829 0.97566 1.04513 1.17639 0.92946 0.89960 0.90466 1.19492 1.02774 1.20107 1.07146 0.90268 1.25926 0.97088 0.93245 0.98487 1.69707 1.32128 1.16477 1.24732 0.86202 0.81245 0.79022 0.79239 1.19045 1.20318 1.18950 1.21968 0.93144 0.99653 0.94809 0.88374 0.89276 0.89568 0.83776 0.84205 0.82248 0.73016 0.88644 0.88526 0.88269 0.90636 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 9.84 36.00 0.35 -1.01 16 2 C 0.40 4.71 7.20 -30.94 -0.22 4.49 16 3 O -0.46 -7.09 14.65 5.52 0.08 -7.01 16 4 C -0.23 -2.88 5.88 -104.91 -0.62 -3.49 16 5 C -0.02 -0.22 9.38 -39.14 -0.37 -0.59 16 6 C -0.20 -1.96 10.00 -39.56 -0.40 -2.36 16 7 C 0.15 2.07 7.30 -39.28 -0.29 1.78 16 8 F -0.13 -1.82 17.26 2.25 0.04 -1.78 16 9 C -0.18 -2.91 8.64 -39.37 -0.34 -3.25 16 10 C 0.26 4.12 6.29 -83.48 -0.53 3.60 16 11 N -0.67 -12.18 4.61 -10.51 -0.05 -12.23 16 12 C 0.56 12.53 7.60 -12.33 -0.09 12.44 16 13 O -0.52 -12.65 13.81 5.32 0.07 -12.58 16 14 C -0.14 -3.32 5.87 -105.04 -0.62 -3.94 16 15 C -0.20 -4.27 9.55 -38.91 -0.37 -4.64 16 16 C -0.11 -2.29 10.01 -39.72 -0.40 -2.68 16 17 C -0.19 -4.54 9.78 -38.81 -0.38 -4.92 16 18 C 0.09 2.43 5.55 -106.87 -0.59 1.84 16 19 C -0.46 -12.23 9.04 -37.73 -0.34 -12.57 16 20 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 21 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 22 N -0.80 -21.52 10.60 55.55 0.59 -20.93 16 23 Si 0.92 19.05 29.56 -169.99 -5.03 14.03 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 27 C -0.08 -2.01 8.21 -38.44 -0.32 -2.33 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.36 6.29 -51.92 -0.33 0.03 16 31 H 0.14 0.71 6.26 -52.49 -0.33 0.38 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.16 2.91 6.27 -52.49 -0.33 2.58 16 34 H 0.43 7.36 4.38 -40.82 -0.18 7.18 16 35 H 0.10 1.82 6.39 -52.49 -0.34 1.49 16 36 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.28 7.01 8.30 -40.82 -0.34 6.68 16 39 H 0.15 4.18 5.72 -52.48 -0.30 3.88 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.64 339.28 -8.24 -38.88 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -3.46 Total: 12.47 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -5.60 Total: -15.97 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.54 Total: -33.16 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.15 Total: -19.59 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.64 -8.24 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184839624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.781 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds