Wall clock time and date at job start Tue Mar 31 2020 15:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21321 * 119.99718 * 2 1 4 4 C 1.46600 * 120.00297 * 180.02562 * 2 1 3 5 5 C 1.40088 * 120.20622 * 4.74931 * 4 2 1 6 6 C 1.37545 * 119.92285 * 179.97438 * 5 4 2 7 7 C 1.38970 * 120.34435 * 359.97438 * 6 5 4 8 8 F 1.35101 * 119.78841 * 180.02562 * 7 6 5 9 9 C 1.38310 * 120.42191 * 359.79165 * 7 6 5 10 10 C 1.38725 * 120.06623 * 0.46030 * 9 7 6 11 11 N 1.39057 * 120.17067 * 179.78882 * 10 9 7 12 12 C 1.34771 * 120.00460 * 324.39841 * 11 10 9 13 13 O 1.21548 * 120.00025 * 3.86093 * 12 11 10 14 14 C 1.47843 * 120.00312 * 183.86235 * 12 11 10 15 15 C 1.39937 * 120.02441 * 359.73041 * 14 12 11 16 16 C 1.38324 * 120.35594 * 179.69578 * 15 14 12 17 17 C 1.37761 * 120.40890 * 0.59889 * 16 15 14 18 18 C 1.40756 * 120.04610 * 359.67751 * 17 16 15 19 19 C 1.41442 * 120.17534 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00103 * 325.29638 * 19 18 17 21 21 C 1.39937 * 119.99788 * 145.29480 * 19 18 17 22 22 N 1.30830 * 119.99803 * 4.28916 * 21 19 18 23 23 Si 1.86799 * 119.99767 * 184.29109 * 21 19 18 24 24 H 1.48505 * 109.47230 * 60.00050 * 23 21 19 25 25 H 1.48501 * 109.47045 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47251 * 300.00003 * 23 21 19 27 27 C 1.39013 * 120.02625 * 179.97438 * 14 12 11 28 28 H 1.09001 * 109.47451 * 269.99513 * 1 2 3 29 29 H 1.09004 * 109.47471 * 30.00021 * 1 2 3 30 30 H 1.09009 * 109.46964 * 149.99638 * 1 2 3 31 31 H 1.07997 * 120.03827 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.82714 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.97239 * 180.23229 * 9 7 6 34 34 H 0.97006 * 119.99398 * 144.11861 * 11 10 9 35 35 H 1.07999 * 119.82424 * 359.97438 * 15 14 12 36 36 H 1.07996 * 119.79481 * 180.29969 * 16 15 14 37 37 H 1.08002 * 119.97369 * 179.70343 * 17 16 15 38 38 H 0.97004 * 119.99592 * 180.02562 * 22 21 19 39 39 H 1.08004 * 120.20590 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2400 -1.2696 -0.0006 5 6 1.5476 -2.4832 -0.1013 6 6 2.2413 -3.6709 -0.1018 7 6 3.6275 -3.6744 -0.0033 8 9 4.2976 -4.8475 -0.0054 9 6 4.3258 -2.4843 0.0920 10 6 3.6433 -1.2766 0.0994 11 7 4.3429 -0.0790 0.1995 12 6 5.4539 -0.0091 0.9592 13 8 5.8842 -1.0089 1.5003 14 6 6.1495 1.2837 1.1345 15 6 5.6578 2.4340 0.5072 16 6 6.2996 3.6483 0.6716 17 6 7.4366 3.7371 1.4443 18 6 7.9492 2.5898 2.0784 19 6 9.1161 2.6780 2.8728 20 1 9.9059 3.3616 2.5983 21 6 9.2473 1.8794 4.0144 22 7 8.3298 0.9918 4.3008 23 14 10.7325 2.0808 5.1294 24 1 10.7716 3.4688 5.6560 25 1 10.6346 1.1249 6.2616 26 1 11.9715 1.8092 4.3574 27 6 7.2952 1.3565 1.9183 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4705 -2.4862 -0.1794 32 1 1.7060 -4.6056 -0.1800 33 1 5.4033 -2.4953 0.1644 34 1 4.0335 0.7050 -0.2807 35 1 4.7701 2.3742 -0.1048 36 1 5.9095 4.5312 0.1873 37 1 7.9347 4.6879 1.5640 38 1 8.4206 0.4386 5.0924 39 1 7.6802 0.4706 2.4015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184839624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:38 Heat of formation + Delta-G solvation = -84.246725 kcal Electronic energy + Delta-G solvation = -26553.847223 eV Core-core repulsion = 22533.066229 eV Total energy + Delta-G solvation = -4020.780994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.10496 -42.11216 -40.52983 -39.25441 -38.66017 -36.06673 -35.50874 -32.94406 -32.42153 -31.38263 -30.71975 -29.90624 -27.27934 -25.34807 -24.88260 -23.33736 -22.77896 -21.59033 -21.05299 -19.71122 -19.27422 -18.04440 -17.84595 -17.46737 -17.17890 -16.83639 -16.72153 -16.47347 -16.11987 -15.91027 -15.77110 -15.57545 -15.21147 -15.02101 -14.50889 -14.38824 -14.28849 -14.04481 -13.64470 -13.49225 -13.05878 -12.93333 -12.92852 -12.81325 -12.65331 -12.52095 -12.24082 -11.95637 -11.64682 -11.60415 -11.17413 -11.00413 -10.70792 -10.01468 -9.68537 -9.36820 -9.36000 -8.55917 -6.48545 -0.64572 -0.05528 0.35341 0.95361 1.25488 1.35948 1.45130 1.49528 1.83368 1.92977 2.19969 2.52784 2.76873 2.97322 3.14054 3.54882 3.57074 3.76256 3.93532 4.07618 4.10867 4.30385 4.34156 4.48791 4.58141 4.71035 4.78437 4.87571 4.90665 4.99714 5.00592 5.05041 5.08707 5.24220 5.29416 5.31612 5.44328 5.72355 5.77013 5.81394 6.01649 6.19530 6.27912 6.50789 6.54643 6.85576 6.88951 6.97910 8.36262 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.003466 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.152510 B = 8077.133202 C = 9478.412397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.394 3.606 3 O -0.503 6.503 4 C -0.228 4.228 5 C 0.002 3.998 6 C -0.172 4.172 7 C 0.141 3.859 8 F -0.139 7.139 9 C -0.209 4.209 10 C 0.213 3.787 11 N -0.654 5.654 12 C 0.560 3.440 13 O -0.557 6.557 14 C -0.150 4.150 15 C -0.183 4.183 16 C -0.102 4.102 17 C -0.194 4.194 18 C 0.062 3.938 19 C -0.499 4.499 20 H 0.085 0.915 21 C 0.022 3.978 22 N -0.845 5.845 23 Si 0.992 3.008 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.258 1.258 27 C -0.112 4.112 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.206 0.794 32 H 0.184 0.816 33 H 0.120 0.880 34 H 0.428 0.572 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.283 0.717 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.860 -6.420 -9.407 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.277 3.723 3 O -0.383 6.383 4 C -0.232 4.232 5 C -0.016 4.016 6 C -0.191 4.191 7 C 0.121 3.879 8 F -0.118 7.118 9 C -0.230 4.230 10 C 0.115 3.885 11 N -0.304 5.304 12 C 0.353 3.647 13 O -0.436 6.436 14 C -0.153 4.153 15 C -0.203 4.203 16 C -0.120 4.120 17 C -0.214 4.214 18 C 0.059 3.941 19 C -0.530 4.530 20 H 0.103 0.897 21 C -0.190 4.190 22 N -0.473 5.473 23 Si 0.813 3.187 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.182 1.182 27 C -0.133 4.133 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.223 0.777 32 H 0.201 0.799 33 H 0.138 0.862 34 H 0.274 0.726 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.256 -6.697 -8.852 21.365 hybrid contribution 1.443 -0.006 0.629 1.574 sum -16.813 -6.703 -8.223 19.880 Atomic orbital electron populations 1.22264 0.88645 1.07088 1.06422 1.23024 0.94214 0.85853 0.69207 1.90441 1.72827 1.35625 1.39359 1.20806 0.90405 0.98372 1.13624 1.21724 1.02413 0.87607 0.89810 1.21496 0.90052 1.02179 1.05344 1.18043 0.91625 0.79726 0.98487 1.91506 1.81349 1.45538 1.93368 1.21156 1.01557 0.91698 1.08617 1.18014 0.91070 0.85447 0.93939 1.43677 1.25941 1.13208 1.47557 1.19020 0.79591 0.89249 0.76852 1.90686 1.65980 1.37934 1.48986 1.19668 0.98863 0.92415 1.04372 1.20901 1.02132 0.92359 1.04865 1.20940 0.95325 0.97252 0.98485 1.21606 0.98497 0.97374 1.03882 1.17994 0.93786 0.90781 0.91489 1.19815 1.03498 1.21397 1.08248 0.89652 1.26898 0.99965 0.92388 0.99713 1.69871 1.34376 1.17679 1.25357 0.85096 0.77278 0.79342 0.77025 1.17873 1.19917 1.18196 1.21739 0.95327 0.98976 0.97217 0.86817 0.88753 0.85666 0.77738 0.79872 0.86206 0.72612 0.85666 0.84058 0.86442 0.90667 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 9.84 71.23 0.70 -0.88 16 2 C 0.39 8.19 7.20 27.87 0.20 8.39 16 3 O -0.50 -14.91 14.65 -3.16 -0.05 -14.96 16 4 C -0.23 -5.13 5.88 -20.05 -0.12 -5.25 16 5 C 0.00 0.03 9.38 22.56 0.21 0.24 16 6 C -0.17 -2.69 10.00 22.28 0.22 -2.46 16 7 C 0.14 3.71 7.30 22.46 0.16 3.88 16 8 F -0.14 -3.87 17.26 44.97 0.78 -3.09 16 9 C -0.21 -7.16 8.64 22.40 0.19 -6.97 16 10 C 0.21 7.02 6.29 38.71 0.24 7.27 16 11 N -0.65 -25.09 4.61 -305.46 -1.41 -26.50 16 12 C 0.56 26.85 7.60 86.79 0.66 27.51 16 13 O -0.56 -29.99 13.81 -3.87 -0.05 -30.04 16 14 C -0.15 -7.59 5.87 -20.14 -0.12 -7.70 16 15 C -0.18 -7.93 9.55 22.70 0.22 -7.71 16 16 C -0.10 -4.26 10.01 22.18 0.22 -4.04 16 17 C -0.19 -9.22 9.78 22.77 0.22 -9.00 16 18 C 0.06 3.42 5.55 -21.32 -0.12 3.30 16 19 C -0.50 -27.62 9.04 23.47 0.21 -27.40 16 20 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 21 C 0.02 1.19 5.42 85.25 0.46 1.65 16 22 N -0.85 -48.57 10.60 21.82 0.23 -48.34 16 23 Si 0.99 40.55 29.56 68.60 2.03 42.58 16 24 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 27 C -0.11 -6.44 8.21 23.01 0.19 -6.25 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.13 0.06 6.29 -2.38 -0.01 0.05 16 31 H 0.21 0.19 6.26 -2.91 -0.02 0.17 16 32 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.12 4.99 6.27 -2.91 -0.02 4.97 16 34 H 0.43 15.17 4.38 -92.70 -0.41 14.76 16 35 H 0.13 4.64 6.39 -2.91 -0.02 4.62 16 36 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 38 H 0.28 15.10 8.30 -92.71 -0.77 14.33 16 39 H 0.11 7.11 5.72 -2.91 -0.02 7.09 16 Total: -1.00 -77.68 339.28 6.02 -71.65 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.73 Total: 34.12 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.77 Total: -25.43 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.18 Total: -74.84 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.10 Total: -45.00 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -77.68 6.02 -71.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184839624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.594 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds