Wall clock time and date at job start Tue Mar 31 2020 15:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99742 * 2 1 4 4 C 1.38728 * 120.05380 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94521 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05272 * 0.02615 * 5 4 3 7 7 C 1.50697 * 119.94406 * 179.97438 * 6 5 4 8 8 F 1.39899 * 109.47482 * 330.00373 * 7 6 5 9 9 F 1.39904 * 109.47410 * 209.99918 * 7 6 5 10 10 C 1.50707 * 109.46913 * 90.00077 * 7 6 5 11 11 O 1.21279 * 119.99658 * 25.00415 * 10 7 6 12 12 N 1.34771 * 120.00011 * 204.99715 * 10 7 6 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 7 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 7 25 25 C 1.38264 * 120.11235 * 0.25241 * 6 5 4 26 26 C 1.38150 * 120.05811 * 359.44676 * 25 6 5 27 27 H 1.09006 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46851 * 299.99500 * 1 2 3 29 29 H 1.08999 * 109.47278 * 59.99947 * 1 2 3 30 30 H 1.07995 * 120.03282 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.97399 * 180.02562 * 5 4 3 32 32 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 33 33 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 34 34 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 35 35 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 36 36 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 37 37 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 38 38 H 1.07998 * 119.97366 * 179.70579 * 25 6 5 39 39 H 1.08001 * 120.03130 * 180.24759 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 9 5.2152 4.9152 0.6625 9 9 3.1796 5.9523 0.6626 10 6 4.2144 5.4672 -1.4177 11 8 3.5034 5.0497 -2.3072 12 7 5.2087 6.3322 -1.6996 13 6 5.7080 6.9675 -2.9346 14 6 6.2512 8.0792 -2.0186 15 8 5.3333 9.1548 -1.8128 16 6 7.6339 8.5496 -2.3899 17 1 8.1143 8.1664 -3.2780 18 6 8.2856 9.4692 -1.5959 19 7 7.8348 9.7323 -0.3887 20 14 9.8089 10.3415 -2.2347 21 1 10.3179 11.2731 -1.1962 22 1 10.8560 9.3384 -2.5551 23 1 9.4642 11.1060 -3.4602 24 6 6.2361 7.0241 -0.8972 25 6 1.9210 3.6048 0.0069 26 6 1.2914 2.3751 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 4.0209 0.3801 0.0005 31 1 5.1344 2.5751 0.0011 32 1 4.9179 7.2999 -3.6079 33 1 6.4859 6.3962 -3.4410 34 1 5.6149 9.7887 -1.1390 35 1 7.0964 9.2195 -0.0244 36 1 7.1691 6.4683 -0.8043 37 1 5.8678 7.4020 0.0567 38 1 1.3341 4.5114 0.0121 39 1 0.2128 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188680911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:01 Heat of formation + Delta-G solvation = -144.869152 kcal Electronic energy + Delta-G solvation = -28215.196307 eV Core-core repulsion = 23761.017303 eV Total energy + Delta-G solvation = -4454.179004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.11443 -47.12491 -40.39915 -39.76348 -38.13755 -37.37244 -34.42512 -32.43305 -31.61317 -31.26136 -29.27492 -27.94024 -26.29043 -25.66083 -24.68686 -22.95360 -21.99810 -20.53975 -19.23242 -18.58358 -18.26361 -17.60715 -17.58290 -17.05046 -16.20903 -16.04477 -15.85538 -15.06846 -15.00921 -14.73094 -14.21452 -14.05398 -13.95160 -13.87278 -13.69961 -13.56913 -13.51008 -13.27198 -12.97420 -12.80728 -12.50061 -12.31404 -12.24821 -11.81121 -11.55438 -11.40391 -11.19179 -11.11846 -10.96062 -10.62608 -10.23955 -9.79999 -9.41779 -9.24051 -8.88883 -8.57324 -8.52307 -8.08023 -6.72404 -4.52826 0.98552 1.12757 2.48264 2.76778 2.93561 3.29279 3.33556 3.41553 3.51389 3.76037 3.97127 4.29725 4.42828 4.56831 4.60573 4.70177 4.78233 4.81769 4.88303 5.08062 5.13273 5.20987 5.25412 5.39708 5.58139 5.76750 5.83016 5.87142 6.04379 6.04860 6.19527 6.23492 6.27036 6.30752 6.40755 6.68326 7.05531 7.58180 7.94593 8.04321 8.13905 8.40497 8.77116 9.17829 10.59068 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.002854 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.397085 B = 9807.041401 C = 9853.707835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.144 3.856 4 C -0.153 4.153 5 C -0.041 4.041 6 C -0.173 4.173 7 C 0.341 3.659 8 F -0.181 7.181 9 F -0.178 7.178 10 C 0.501 3.499 11 O -0.520 6.520 12 N -0.615 5.615 13 C 0.125 3.875 14 C 0.217 3.783 15 O -0.565 6.565 16 C -0.618 4.618 17 H 0.067 0.933 18 C 0.037 3.963 19 N -0.895 5.895 20 Si 1.068 2.932 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.070 3.930 25 C -0.028 4.028 26 C -0.210 4.210 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.377 0.623 35 H 0.269 0.731 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 -14.901 3.194 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.098 3.902 4 C -0.171 4.171 5 C -0.060 4.060 6 C -0.175 4.175 7 C 0.301 3.699 8 F -0.161 7.161 9 F -0.159 7.159 10 C 0.284 3.716 11 O -0.397 6.397 12 N -0.347 5.347 13 C 0.004 3.996 14 C 0.176 3.824 15 O -0.373 6.373 16 C -0.656 4.656 17 H 0.085 0.915 18 C -0.169 4.169 19 N -0.531 5.531 20 Si 0.894 3.106 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.053 4.053 25 C -0.046 4.046 26 C -0.228 4.228 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.639 -14.565 2.713 17.675 hybrid contribution -1.044 -0.735 0.347 1.323 sum -10.683 -15.300 3.060 18.910 Atomic orbital electron populations 1.23106 0.78143 1.04075 1.01659 1.86075 1.21643 1.26788 1.88357 1.19123 0.92410 0.84181 0.94459 1.20322 0.91364 0.98282 1.07162 1.20733 1.00369 0.90437 0.94418 1.19694 0.94913 0.92359 1.10499 1.19589 0.76385 0.86853 0.87029 1.93058 1.43940 1.96468 1.82667 1.93063 1.73219 1.67363 1.82213 1.20141 0.82637 0.79630 0.89202 1.90716 1.47109 1.55709 1.46194 1.50302 1.29032 1.41006 1.14386 1.23456 0.96876 0.90791 0.88458 1.20141 0.89010 0.83697 0.89560 1.86246 1.48970 1.38837 1.63204 1.22176 0.99541 1.30394 1.13472 0.91480 1.26011 1.02343 0.94859 0.93688 1.70946 1.26691 1.40604 1.14823 0.83564 0.74621 0.76527 0.75856 1.20523 1.21068 1.20973 1.24712 0.88868 0.93562 0.98110 1.20672 0.92869 0.98055 0.92998 1.21156 1.00278 0.91712 1.09678 0.88100 0.92443 0.92360 0.84379 0.84373 0.90464 0.88598 0.77388 0.91940 0.88690 0.91177 0.84802 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.32 10.50 -19.43 -0.20 -3.53 16 3 C 0.14 1.72 6.69 -39.22 -0.26 1.46 16 4 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 5 C -0.04 -0.57 9.39 -39.60 -0.37 -0.94 16 6 C -0.17 -2.70 4.39 -104.60 -0.46 -3.16 16 7 C 0.34 6.09 2.14 -29.03 -0.06 6.03 16 8 F -0.18 -3.17 14.77 2.25 0.03 -3.13 16 9 F -0.18 -3.22 16.18 2.25 0.04 -3.18 16 10 C 0.50 10.25 7.45 -10.98 -0.08 10.17 16 11 O -0.52 -11.50 16.97 5.56 0.09 -11.40 16 12 N -0.61 -12.94 3.59 -178.25 -0.64 -13.58 16 13 C 0.13 2.65 8.22 -2.97 -0.02 2.63 16 14 C 0.22 5.07 1.08 -90.83 -0.10 4.97 16 15 O -0.57 -13.83 13.45 -35.23 -0.47 -14.31 16 16 C -0.62 -15.39 8.56 -34.44 -0.29 -15.68 16 17 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 18 C 0.04 0.94 5.26 -17.82 -0.09 0.84 16 19 N -0.89 -23.42 12.80 55.43 0.71 -22.71 16 20 Si 1.07 22.47 29.93 -169.99 -5.09 17.39 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 C 0.07 1.50 5.87 -2.95 -0.02 1.48 16 25 C -0.03 -0.39 9.36 -39.60 -0.37 -0.76 16 26 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 1.72 7.60 -52.49 -0.40 1.32 16 32 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 33 H 0.10 1.86 8.09 -51.93 -0.42 1.44 16 34 H 0.38 9.03 6.95 45.56 0.32 9.35 16 35 H 0.27 6.88 5.53 -40.82 -0.23 6.66 16 36 H 0.10 1.99 8.09 -51.93 -0.42 1.57 16 37 H 0.07 1.51 7.80 -51.92 -0.40 1.10 16 38 H 0.13 1.77 7.59 -52.49 -0.40 1.37 16 39 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -29.74 342.24 -5.82 -35.56 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -3.55 Total: 10.60 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.90 Total: 3.14 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.07 Total: -36.29 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.58 Total: -29.24 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.07 Total: -6.32 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.09 Total: 17.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.74 -5.82 -35.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188680911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.308 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds