Wall clock time and date at job start Tue Mar 31 2020 15:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99742 * 2 1 4 4 C 1.38728 * 120.05380 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94521 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05272 * 0.02615 * 5 4 3 7 7 C 1.50697 * 119.94406 * 179.97438 * 6 5 4 8 8 F 1.39899 * 109.47482 * 330.00373 * 7 6 5 9 9 F 1.39904 * 109.47410 * 209.99918 * 7 6 5 10 10 C 1.50707 * 109.46913 * 90.00077 * 7 6 5 11 11 O 1.21279 * 119.99658 * 25.00415 * 10 7 6 12 12 N 1.34771 * 120.00011 * 204.99715 * 10 7 6 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 7 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 7 25 25 C 1.38264 * 120.11235 * 0.25241 * 6 5 4 26 26 C 1.38150 * 120.05811 * 359.44676 * 25 6 5 27 27 H 1.09006 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46851 * 299.99500 * 1 2 3 29 29 H 1.08999 * 109.47278 * 59.99947 * 1 2 3 30 30 H 1.07995 * 120.03282 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.97399 * 180.02562 * 5 4 3 32 32 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 33 33 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 34 34 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 35 35 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 36 36 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 37 37 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 38 38 H 1.07998 * 119.97366 * 179.70579 * 25 6 5 39 39 H 1.08001 * 120.03130 * 180.24759 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 9 5.2152 4.9152 0.6625 9 9 3.1796 5.9523 0.6626 10 6 4.2144 5.4672 -1.4177 11 8 3.5034 5.0497 -2.3072 12 7 5.2087 6.3322 -1.6996 13 6 5.7080 6.9675 -2.9346 14 6 6.2512 8.0792 -2.0186 15 8 5.3333 9.1548 -1.8128 16 6 7.6339 8.5496 -2.3899 17 1 8.1143 8.1664 -3.2780 18 6 8.2856 9.4692 -1.5959 19 7 7.8348 9.7323 -0.3887 20 14 9.8089 10.3415 -2.2347 21 1 10.3179 11.2731 -1.1962 22 1 10.8560 9.3384 -2.5551 23 1 9.4642 11.1060 -3.4602 24 6 6.2361 7.0241 -0.8972 25 6 1.9210 3.6048 0.0069 26 6 1.2914 2.3751 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 4.0209 0.3801 0.0005 31 1 5.1344 2.5751 0.0011 32 1 4.9179 7.2999 -3.6079 33 1 6.4859 6.3962 -3.4410 34 1 5.6149 9.7887 -1.1390 35 1 7.0964 9.2195 -0.0244 36 1 7.1691 6.4683 -0.8043 37 1 5.8678 7.4020 0.0567 38 1 1.3341 4.5114 0.0121 39 1 0.2128 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188680911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:00 Heat of formation + Delta-G solvation = -164.432047 kcal Electronic energy + Delta-G solvation = -28216.044618 eV Core-core repulsion = 23761.017303 eV Total energy + Delta-G solvation = -4455.027315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.53013 -48.54420 -41.55484 -41.20507 -39.62699 -38.49228 -36.27065 -34.36604 -32.68328 -32.25767 -30.89245 -28.75916 -27.64017 -27.40898 -26.32179 -23.92061 -23.20752 -22.09892 -20.87234 -20.10168 -19.53203 -18.97616 -18.85295 -18.62224 -17.59610 -17.05223 -16.79536 -16.73637 -16.55015 -15.96475 -15.92601 -15.56684 -15.37787 -15.18886 -14.97810 -14.83567 -14.65121 -14.59732 -14.37094 -14.19869 -14.04131 -13.73990 -13.53889 -13.04792 -12.96298 -12.86778 -12.64637 -12.42338 -12.16964 -11.96777 -11.90100 -11.43075 -11.24011 -10.75986 -10.36424 -10.20580 -9.87526 -9.46688 -8.69490 -6.51002 -0.04427 0.16257 0.86512 1.23689 1.62522 1.65920 1.87405 2.18289 2.26846 2.40225 2.56225 2.65209 2.87914 3.16523 3.25520 3.39873 3.67431 3.77473 3.79349 4.08804 4.14568 4.25308 4.29738 4.37809 4.38771 4.43622 4.45762 4.53789 4.58310 4.71501 4.82634 4.88206 4.92492 5.10213 5.21633 5.46779 5.68374 6.07499 6.25325 6.27435 6.41073 6.49711 6.85928 7.25822 8.62930 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.002854 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.397085 B = 9807.041401 C = 9853.707835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.146 3.854 4 C -0.155 4.155 5 C -0.050 4.050 6 C -0.199 4.199 7 C 0.346 3.654 8 F -0.181 7.181 9 F -0.182 7.182 10 C 0.497 3.503 11 O -0.537 6.537 12 N -0.618 5.618 13 C 0.127 3.873 14 C 0.200 3.800 15 O -0.575 6.575 16 C -0.629 4.629 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.915 5.915 20 Si 1.112 2.888 21 H -0.286 1.286 22 H -0.268 1.268 23 H -0.276 1.276 24 C 0.084 3.916 25 C -0.041 4.041 26 C -0.205 4.205 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.375 0.625 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.380 -16.547 3.039 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.100 3.900 4 C -0.173 4.173 5 C -0.068 4.068 6 C -0.201 4.201 7 C 0.306 3.694 8 F -0.162 7.162 9 F -0.163 7.163 10 C 0.281 3.719 11 O -0.416 6.416 12 N -0.351 5.351 13 C 0.006 3.994 14 C 0.159 3.841 15 O -0.383 6.383 16 C -0.667 4.667 17 H 0.087 0.913 18 C -0.204 4.204 19 N -0.552 5.552 20 Si 0.934 3.066 21 H -0.211 1.211 22 H -0.193 1.193 23 H -0.201 1.201 24 C -0.039 4.039 25 C -0.060 4.060 26 C -0.223 4.223 27 H 0.143 0.857 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.224 0.776 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.078 -16.238 2.557 19.281 hybrid contribution -1.031 -0.316 0.380 1.143 sum -11.109 -16.553 2.937 20.151 Atomic orbital electron populations 1.23461 0.75958 1.06082 1.02598 1.86082 1.23893 1.25886 1.87835 1.19272 0.92575 0.84870 0.93267 1.20574 0.92009 0.98384 1.06369 1.20860 1.00737 0.90520 0.94654 1.19676 0.95712 0.91328 1.13376 1.19512 0.76599 0.88007 0.85241 1.93051 1.44132 1.96517 1.82466 1.93047 1.73322 1.67846 1.82088 1.20636 0.81846 0.78986 0.90413 1.90690 1.47487 1.56222 1.47183 1.50313 1.29298 1.41363 1.14126 1.23478 0.97238 0.90329 0.88369 1.20349 0.88647 0.83954 0.91167 1.86231 1.49441 1.39336 1.63271 1.22415 1.00196 1.30661 1.13430 0.91343 1.27162 1.04416 0.95425 0.93413 1.71021 1.27207 1.41279 1.15684 0.82976 0.72305 0.75954 0.75362 1.21150 1.19309 1.20140 1.24472 0.89152 0.92952 0.97292 1.20815 0.92397 0.99159 0.93580 1.21424 1.01794 0.90695 1.08385 0.85739 0.91206 0.91652 0.82292 0.83839 0.90795 0.86731 0.77551 0.92559 0.88233 0.91671 0.84791 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.93 10.50 -92.43 -0.97 -6.90 16 3 C 0.15 3.18 6.69 22.51 0.15 3.33 16 4 C -0.16 -3.50 9.99 22.37 0.22 -3.28 16 5 C -0.05 -1.32 9.39 22.26 0.21 -1.11 16 6 C -0.20 -6.14 4.39 -19.85 -0.09 -6.23 16 7 C 0.35 12.39 2.14 29.10 0.06 12.45 16 8 F -0.18 -6.36 14.77 44.97 0.66 -5.69 16 9 F -0.18 -6.67 16.18 44.97 0.73 -5.94 16 10 C 0.50 20.38 7.45 87.66 0.65 21.04 16 11 O -0.54 -23.77 16.97 -3.03 -0.05 -23.83 16 12 N -0.62 -26.06 3.59 -840.07 -3.02 -29.07 16 13 C 0.13 5.35 8.22 86.48 0.71 6.06 16 14 C 0.20 9.35 1.08 -10.87 -0.01 9.34 16 15 O -0.58 -28.55 13.45 -148.98 -2.00 -30.55 16 16 C -0.63 -31.13 8.56 25.60 0.22 -30.91 16 17 H 0.07 3.30 7.85 -2.91 -0.02 3.27 16 18 C 0.00 -0.12 5.26 84.65 0.45 0.33 16 19 N -0.92 -48.09 12.80 21.45 0.27 -47.81 16 20 Si 1.11 44.60 29.93 68.60 2.05 46.66 16 21 H -0.29 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 24 C 0.08 3.61 5.87 86.49 0.51 4.12 16 25 C -0.04 -1.12 9.36 22.25 0.21 -0.91 16 26 C -0.20 -4.38 9.04 22.37 0.20 -4.17 16 27 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.06 0.57 7.66 -2.39 -0.02 0.56 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.14 3.50 7.60 -2.91 -0.02 3.48 16 32 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.11 4.35 8.09 -2.39 -0.02 4.33 16 34 H 0.38 18.42 6.95 -74.06 -0.52 17.91 16 35 H 0.26 13.68 5.53 -92.70 -0.51 13.17 16 36 H 0.10 4.17 8.09 -2.39 -0.02 4.15 16 37 H 0.06 2.85 7.80 -2.38 -0.02 2.83 16 38 H 0.13 3.50 7.59 -2.91 -0.02 3.48 16 39 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16 Total: -1.00 -62.55 342.24 3.14 -59.42 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.85 Total: 32.43 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 4.61 Total: 11.30 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.74 Total: -76.88 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -3.03 Total: -61.28 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 1.39 Total: -11.64 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.05 Total: 46.66 kcal Total: -62.55 3.14 -59.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188680911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.017 kcal (2) G-P(sol) polarization free energy of solvation -62.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds