Wall clock time and date at job start Tue Mar 31 2020 15:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46806 * 2 1 4 4 O 1.42904 * 109.46872 * 119.99890 * 2 1 3 5 5 C 1.35943 * 117.00195 * 276.99333 * 4 2 1 6 6 C 1.38728 * 120.01644 * 356.32953 * 5 4 2 7 7 C 1.38169 * 120.00830 * 180.02562 * 6 5 4 8 8 C 1.38407 * 120.05720 * 359.97252 * 7 6 5 9 9 F 1.35096 * 119.97652 * 180.02562 * 8 7 6 10 10 C 1.38647 * 120.03878 * 359.97438 * 8 7 6 11 11 F 1.35097 * 120.00731 * 179.97438 * 10 8 7 12 12 C 1.38362 * 119.98831 * 0.27597 * 10 8 7 13 13 C 1.50700 * 109.47334 * 240.00013 * 2 1 3 14 14 O 1.21273 * 119.99810 * 245.00370 * 13 2 1 15 15 N 1.34777 * 119.99729 * 64.99851 * 13 2 1 16 16 C 1.47060 * 136.05930 * 359.63177 * 15 13 2 17 17 C 1.53242 * 88.08576 * 207.20203 * 16 15 13 18 18 O 1.42900 * 114.19602 * 87.72962 * 17 16 15 19 19 C 1.50695 * 114.32765 * 220.47125 * 17 16 15 20 20 H 1.08004 * 120.00292 * 99.14111 * 19 17 16 21 21 C 1.37880 * 120.00180 * 279.13958 * 19 17 16 22 22 N 1.31512 * 119.99729 * 5.80699 * 21 19 17 23 23 Si 1.86801 * 120.00159 * 185.80439 * 21 19 17 24 24 H 1.48493 * 109.46875 * 94.99894 * 23 21 19 25 25 H 1.48498 * 109.46825 * 214.99710 * 23 21 19 26 26 H 1.48500 * 109.47235 * 334.99863 * 23 21 19 27 27 C 1.47073 * 136.05437 * 180.02562 * 15 13 2 28 28 H 1.08997 * 109.46900 * 60.00086 * 1 2 3 29 29 H 1.08999 * 109.46806 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46883 * 300.00000 * 1 2 3 31 31 H 1.07994 * 119.99844 * 359.97438 * 6 5 4 32 32 H 1.08007 * 119.96869 * 179.97438 * 7 6 5 33 33 H 1.07991 * 120.02969 * 179.72541 * 12 10 8 34 34 H 1.08999 * 113.47369 * 321.93682 * 16 15 13 35 35 H 1.09006 * 113.47155 * 92.37602 * 16 15 13 36 36 H 0.96700 * 114.00331 * 81.05894 * 18 17 16 37 37 H 0.97005 * 120.00388 * 179.97438 * 22 21 19 38 38 H 1.09000 * 113.46477 * 267.62519 * 27 15 13 39 39 H 1.08998 * 113.46612 * 38.00985 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0730 0.0520 2.3145 6 6 1.7606 1.4036 2.3001 7 6 1.8289 2.1410 3.4665 8 6 2.2084 1.5325 4.6502 9 9 2.2742 2.2550 5.7898 10 6 2.5201 0.1816 4.6673 11 9 2.8910 -0.4117 5.8230 12 6 2.4573 -0.5575 3.4993 13 6 2.0324 -0.7104 -1.2304 14 8 2.6530 -1.7466 -1.1214 15 7 1.7920 -0.1941 -2.4520 16 6 1.0995 0.9892 -2.9839 17 6 0.8429 0.1971 -4.2704 18 8 -0.3545 -0.5825 -4.2492 19 6 1.0101 0.9977 -5.5361 20 1 1.9272 0.9277 -6.1022 21 6 -0.0077 1.8196 -5.9716 22 7 -1.0769 1.9935 -5.2259 23 14 0.1321 2.6860 -7.6206 24 1 -0.5517 1.8793 -8.6630 25 1 -0.5060 4.0240 -7.5323 26 1 1.5650 2.8434 -7.9772 27 6 2.1007 -0.5700 -3.8400 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.4647 1.8796 1.3770 32 1 1.5859 3.1934 3.4545 33 1 2.7042 -1.6087 3.5109 34 1 0.1882 1.2395 -2.4409 35 1 1.7552 1.8483 -3.1265 36 1 -1.1561 -0.0776 -4.4431 37 1 -1.7929 2.5720 -5.5320 38 1 3.0259 -0.1308 -4.2130 39 1 2.0396 -1.6428 -4.0229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193973598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:05 Heat of formation + Delta-G solvation = -137.172621 kcal Electronic energy + Delta-G solvation = -27450.485705 eV Core-core repulsion = 22996.640447 eV Total energy + Delta-G solvation = -4453.845258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.67862 -48.74172 -40.78227 -39.63554 -37.93459 -36.88198 -34.16668 -32.44470 -32.39070 -31.00365 -29.61864 -28.60875 -25.72825 -25.27050 -24.45956 -23.69425 -22.39900 -20.37192 -18.97177 -18.69850 -17.70779 -17.67100 -17.36718 -16.81464 -16.57895 -16.03463 -15.84694 -15.48596 -15.19789 -15.16111 -14.71765 -14.66979 -14.36400 -14.28328 -14.13348 -13.35611 -13.13796 -13.07528 -12.80932 -12.77641 -12.29853 -12.26527 -12.06820 -11.82831 -11.73082 -11.35160 -11.13219 -11.02414 -10.94009 -10.57419 -10.40274 -9.67798 -9.40000 -9.29849 -8.92747 -8.56155 -8.46871 -8.03156 -6.50200 -4.59332 0.59588 0.74186 2.41661 2.89860 3.04821 3.08736 3.18011 3.20200 3.45054 3.68909 4.10047 4.11190 4.27310 4.39558 4.56859 4.72465 4.76917 4.79944 4.87087 4.89952 5.37888 5.44188 5.49167 5.52860 5.57294 5.63683 5.75964 5.80799 5.99997 6.04181 6.26032 6.29239 6.35805 6.43931 6.56252 6.92146 7.01943 7.52244 7.70541 8.26383 8.44445 8.51235 9.11547 9.18474 10.57141 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.002576 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.551563 B =10865.398766 C =11556.617746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 H 0.098 0.902 4 O -0.276 6.276 5 C 0.162 3.838 6 C -0.196 4.196 7 C -0.079 4.079 8 C 0.022 3.978 9 F -0.132 7.132 10 C 0.111 3.889 11 F -0.124 7.124 12 C -0.164 4.164 13 C 0.541 3.459 14 O -0.540 6.540 15 N -0.633 5.633 16 C 0.070 3.930 17 C 0.241 3.759 18 O -0.567 6.567 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.113 3.887 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.389 0.611 37 H 0.272 0.728 38 H 0.089 0.911 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 2.880 13.611 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.116 0.884 4 O -0.188 6.188 5 C 0.115 3.885 6 C -0.215 4.215 7 C -0.098 4.098 8 C 0.001 3.999 9 F -0.111 7.111 10 C 0.090 3.910 11 F -0.102 7.102 12 C -0.183 4.183 13 C 0.329 3.671 14 O -0.418 6.418 15 N -0.367 5.367 16 C -0.052 4.052 17 C 0.199 3.801 18 O -0.376 6.376 19 C -0.575 4.575 20 H 0.091 0.909 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.008 4.008 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.241 0.759 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.915 1.651 14.082 14.475 hybrid contribution -0.378 1.316 -0.501 1.458 sum 2.538 2.967 13.581 14.131 Atomic orbital electron populations 1.22371 0.92018 1.04775 1.04270 1.22266 0.96262 0.96850 0.83352 0.88434 1.86253 1.79761 1.37845 1.14930 1.18697 0.93469 0.89832 0.86544 1.21314 1.07094 0.93189 0.99860 1.20849 0.97861 1.01197 0.89883 1.17498 1.09913 0.88483 0.83981 1.91513 1.94606 1.77052 1.47913 1.17206 1.01623 0.89565 0.82577 1.91544 1.88801 1.83723 1.46156 1.20167 1.07328 1.02186 0.88616 1.19242 0.80110 0.85381 0.82405 1.90693 1.41619 1.23809 1.85688 1.49633 1.55016 1.27811 1.04270 1.24293 0.95403 0.89163 0.96380 1.19479 0.82725 0.86835 0.91038 1.86095 1.17953 1.39954 1.93621 1.21365 1.02702 1.25147 1.08276 0.90905 1.25055 0.94875 0.95356 0.97620 1.69607 1.08243 1.38400 1.37052 0.86346 0.78665 0.78640 0.83062 1.20263 1.20966 1.19528 1.23331 0.99433 1.01123 0.76958 0.88927 0.90573 0.91074 0.83299 0.83200 0.82640 0.91173 0.89700 0.75898 0.91781 0.89285 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.18 37.16 0.34 -1.94 16 2 C 0.07 1.04 2.50 -27.88 -0.07 0.97 16 3 H 0.10 1.17 5.99 -51.93 -0.31 0.86 16 4 O -0.28 -4.11 9.35 -39.42 -0.37 -4.48 16 5 C 0.16 1.96 6.54 -39.24 -0.26 1.70 16 6 C -0.20 -1.94 8.34 -39.43 -0.33 -2.27 16 7 C -0.08 -0.72 10.02 -39.54 -0.40 -1.12 16 8 C 0.02 0.23 7.30 -39.37 -0.29 -0.05 16 9 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 10 C 0.11 1.26 7.30 -39.38 -0.29 0.97 16 11 F -0.12 -1.48 17.18 2.25 0.04 -1.44 16 12 C -0.16 -1.87 9.96 -39.38 -0.39 -2.26 16 13 C 0.54 10.28 7.43 -10.99 -0.08 10.19 16 14 O -0.54 -12.20 17.28 -14.30 -0.25 -12.45 16 15 N -0.63 -12.08 3.67 -185.38 -0.68 -12.76 16 16 C 0.07 1.32 7.51 -8.64 -0.06 1.26 16 17 C 0.24 5.24 1.42 -91.40 -0.13 5.11 16 18 O -0.57 -13.21 13.51 -35.23 -0.48 -13.68 16 19 C -0.54 -12.45 8.66 -34.44 -0.30 -12.75 16 20 H 0.07 1.66 7.82 -52.48 -0.41 1.25 16 21 C 0.07 1.72 5.35 -17.82 -0.10 1.63 16 22 N -0.89 -20.89 11.57 55.43 0.64 -20.25 16 23 Si 0.91 18.36 29.54 -169.99 -5.02 13.34 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 C 0.11 2.27 8.03 -8.51 -0.07 2.20 16 28 H 0.09 1.26 5.71 -51.93 -0.30 0.96 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.73 7.33 -51.93 -0.38 0.35 16 31 H 0.15 1.26 5.69 -52.49 -0.30 0.96 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.07 1.28 6.07 -51.93 -0.32 0.96 16 35 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 36 H 0.39 9.06 7.03 45.56 0.32 9.38 16 37 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 38 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -27.21 342.68 -6.69 -33.90 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -3.36 Total: 10.50 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.42 Total: 3.65 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.04 Total: -33.00 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.09 Total: -30.61 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.21 -6.69 -33.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.273 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds