Wall clock time and date at job start Tue Mar 31 2020 15:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46806 * 2 1 4 4 O 1.42904 * 109.46872 * 119.99890 * 2 1 3 5 5 C 1.35943 * 117.00195 * 276.99333 * 4 2 1 6 6 C 1.38728 * 120.01644 * 356.32953 * 5 4 2 7 7 C 1.38169 * 120.00830 * 180.02562 * 6 5 4 8 8 C 1.38407 * 120.05720 * 359.97252 * 7 6 5 9 9 F 1.35096 * 119.97652 * 180.02562 * 8 7 6 10 10 C 1.38647 * 120.03878 * 359.97438 * 8 7 6 11 11 F 1.35097 * 120.00731 * 179.97438 * 10 8 7 12 12 C 1.38362 * 119.98831 * 0.27597 * 10 8 7 13 13 C 1.50700 * 109.47334 * 240.00013 * 2 1 3 14 14 O 1.21273 * 119.99810 * 245.00370 * 13 2 1 15 15 N 1.34777 * 119.99729 * 64.99851 * 13 2 1 16 16 C 1.47060 * 136.05930 * 359.63177 * 15 13 2 17 17 C 1.53242 * 88.08576 * 207.20203 * 16 15 13 18 18 O 1.42900 * 114.19602 * 87.72962 * 17 16 15 19 19 C 1.50695 * 114.32765 * 220.47125 * 17 16 15 20 20 H 1.08004 * 120.00292 * 99.14111 * 19 17 16 21 21 C 1.37880 * 120.00180 * 279.13958 * 19 17 16 22 22 N 1.31512 * 119.99729 * 5.80699 * 21 19 17 23 23 Si 1.86801 * 120.00159 * 185.80439 * 21 19 17 24 24 H 1.48493 * 109.46875 * 94.99894 * 23 21 19 25 25 H 1.48498 * 109.46825 * 214.99710 * 23 21 19 26 26 H 1.48500 * 109.47235 * 334.99863 * 23 21 19 27 27 C 1.47073 * 136.05437 * 180.02562 * 15 13 2 28 28 H 1.08997 * 109.46900 * 60.00086 * 1 2 3 29 29 H 1.08999 * 109.46806 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46883 * 300.00000 * 1 2 3 31 31 H 1.07994 * 119.99844 * 359.97438 * 6 5 4 32 32 H 1.08007 * 119.96869 * 179.97438 * 7 6 5 33 33 H 1.07991 * 120.02969 * 179.72541 * 12 10 8 34 34 H 1.08999 * 113.47369 * 321.93682 * 16 15 13 35 35 H 1.09006 * 113.47155 * 92.37602 * 16 15 13 36 36 H 0.96700 * 114.00331 * 81.05894 * 18 17 16 37 37 H 0.97005 * 120.00388 * 179.97438 * 22 21 19 38 38 H 1.09000 * 113.46477 * 267.62519 * 27 15 13 39 39 H 1.08998 * 113.46612 * 38.00985 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0730 0.0520 2.3145 6 6 1.7606 1.4036 2.3001 7 6 1.8289 2.1410 3.4665 8 6 2.2084 1.5325 4.6502 9 9 2.2742 2.2550 5.7898 10 6 2.5201 0.1816 4.6673 11 9 2.8910 -0.4117 5.8230 12 6 2.4573 -0.5575 3.4993 13 6 2.0324 -0.7104 -1.2304 14 8 2.6530 -1.7466 -1.1214 15 7 1.7920 -0.1941 -2.4520 16 6 1.0995 0.9892 -2.9839 17 6 0.8429 0.1971 -4.2704 18 8 -0.3545 -0.5825 -4.2492 19 6 1.0101 0.9977 -5.5361 20 1 1.9272 0.9277 -6.1022 21 6 -0.0077 1.8196 -5.9716 22 7 -1.0769 1.9935 -5.2259 23 14 0.1321 2.6860 -7.6206 24 1 -0.5517 1.8793 -8.6630 25 1 -0.5060 4.0240 -7.5323 26 1 1.5650 2.8434 -7.9772 27 6 2.1007 -0.5700 -3.8400 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.4647 1.8796 1.3770 32 1 1.5859 3.1934 3.4545 33 1 2.7042 -1.6087 3.5109 34 1 0.1882 1.2395 -2.4409 35 1 1.7552 1.8483 -3.1265 36 1 -1.1561 -0.0776 -4.4431 37 1 -1.7929 2.5720 -5.5320 38 1 3.0259 -0.1308 -4.2130 39 1 2.0396 -1.6428 -4.0229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193973598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:04 Heat of formation + Delta-G solvation = -153.513937 kcal Electronic energy + Delta-G solvation = -27451.194317 eV Core-core repulsion = 22996.640447 eV Total energy + Delta-G solvation = -4454.553870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.55973 -49.62191 -41.92063 -41.00902 -39.27330 -38.08204 -35.88241 -34.16780 -33.54866 -31.89627 -30.53942 -30.10927 -27.34805 -26.82201 -25.58473 -24.54220 -23.42953 -21.87694 -20.13000 -19.91178 -19.28593 -18.62443 -18.45752 -17.99666 -17.48421 -17.33761 -17.17182 -16.81198 -16.65155 -16.11708 -16.04480 -15.95864 -15.56134 -15.28377 -15.06418 -14.86933 -14.51783 -14.34792 -13.96707 -13.79623 -13.76665 -13.45892 -13.42261 -13.24437 -12.87795 -12.75666 -12.61459 -12.27264 -12.21598 -12.08573 -11.91638 -11.26743 -10.91664 -10.65645 -10.22336 -10.20806 -9.63838 -9.35819 -8.24341 -6.38315 -0.23080 -0.08391 1.25420 1.44201 1.48540 1.55057 1.61561 2.19694 2.25748 2.44203 2.79173 2.98166 3.21434 3.26600 3.50997 3.52402 3.71226 3.77091 3.83364 3.91634 4.06872 4.13318 4.41661 4.49749 4.58251 4.64900 4.67819 4.75502 4.79189 4.84483 4.87458 4.93758 5.00164 5.18513 5.24860 5.45809 5.75643 5.97081 6.06575 6.66283 6.76960 7.00458 7.34114 7.39342 8.82048 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.002576 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.551563 B =10865.398766 C =11556.617746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 H 0.130 0.870 4 O -0.301 6.301 5 C 0.144 3.856 6 C -0.185 4.185 7 C -0.065 4.065 8 C 0.017 3.983 9 F -0.137 7.137 10 C 0.100 3.900 11 F -0.132 7.132 12 C -0.168 4.168 13 C 0.533 3.467 14 O -0.585 6.585 15 N -0.630 5.630 16 C 0.087 3.913 17 C 0.221 3.779 18 O -0.579 6.579 19 C -0.554 4.554 20 H 0.070 0.930 21 C 0.041 3.959 22 N -0.907 5.907 23 Si 0.960 3.040 24 H -0.283 1.283 25 H -0.281 1.281 26 H -0.269 1.269 27 C 0.109 3.891 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.386 0.614 37 H 0.274 0.726 38 H 0.106 0.894 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 5.142 14.064 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 H 0.147 0.853 4 O -0.213 6.213 5 C 0.098 3.902 6 C -0.204 4.204 7 C -0.083 4.083 8 C -0.004 4.004 9 F -0.116 7.116 10 C 0.079 3.921 11 F -0.110 7.110 12 C -0.188 4.188 13 C 0.323 3.677 14 O -0.466 6.466 15 N -0.364 5.364 16 C -0.035 4.035 17 C 0.180 3.820 18 O -0.389 6.389 19 C -0.592 4.592 20 H 0.088 0.912 21 C -0.161 4.161 22 N -0.546 5.546 23 Si 0.786 3.214 24 H -0.209 1.209 25 H -0.207 1.207 26 H -0.194 1.194 27 C -0.013 4.013 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.201 0.799 33 H 0.173 0.827 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.638 3.928 14.549 15.299 hybrid contribution -0.278 0.572 -0.620 0.888 sum 2.360 4.500 13.929 14.827 Atomic orbital electron populations 1.22332 0.90733 1.04122 1.05513 1.22202 0.96929 0.97267 0.81408 0.85285 1.86212 1.80472 1.38999 1.15662 1.18846 0.94861 0.90818 0.85652 1.21523 1.05858 0.92052 1.00954 1.21157 0.96076 1.02530 0.88538 1.17724 1.09932 0.88209 0.84486 1.91504 1.94651 1.77054 1.48368 1.17306 1.02382 0.90042 0.82321 1.91521 1.89004 1.83960 1.46526 1.20192 1.07439 1.02398 0.88728 1.20125 0.79214 0.84965 0.83440 1.90665 1.43655 1.25860 1.86389 1.49630 1.54844 1.27761 1.04176 1.24091 0.95956 0.88856 0.94608 1.19698 0.82532 0.87665 0.92137 1.86088 1.18412 1.40673 1.93746 1.21557 1.02890 1.25554 1.09167 0.91181 1.25602 0.94744 0.95921 0.99880 1.69653 1.08462 1.38610 1.37855 0.85514 0.78437 0.77625 0.79851 1.20925 1.20672 1.19355 1.23365 0.99647 1.00200 0.78096 0.89432 0.92268 0.87879 0.81188 0.79938 0.82709 0.90199 0.88386 0.76237 0.91620 0.87590 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.18 71.98 0.66 -3.34 16 2 C 0.08 2.18 2.50 29.85 0.07 2.25 16 3 H 0.13 2.62 5.99 -2.39 -0.01 2.61 16 4 O -0.30 -8.61 9.35 -73.91 -0.69 -9.30 16 5 C 0.14 3.23 6.54 22.49 0.15 3.38 16 6 C -0.19 -3.02 8.34 22.37 0.19 -2.83 16 7 C -0.06 -0.94 10.02 22.29 0.22 -0.71 16 8 C 0.02 0.32 7.30 22.41 0.16 0.49 16 9 F -0.14 -2.90 17.18 44.97 0.77 -2.13 16 10 C 0.10 2.17 7.30 22.40 0.16 2.33 16 11 F -0.13 -3.11 17.18 44.97 0.77 -2.33 16 12 C -0.17 -3.72 9.96 22.40 0.22 -3.49 16 13 C 0.53 19.92 7.43 87.66 0.65 20.57 16 14 O -0.58 -26.78 17.28 15.98 0.28 -26.50 16 15 N -0.63 -23.54 3.67 -859.28 -3.15 -26.69 16 16 C 0.09 3.13 7.51 83.10 0.62 3.76 16 17 C 0.22 9.50 1.42 -11.30 -0.02 9.49 16 18 O -0.58 -27.11 13.51 -148.98 -2.01 -29.13 16 19 C -0.55 -25.28 8.66 25.60 0.22 -25.06 16 20 H 0.07 3.16 7.82 -2.91 -0.02 3.13 16 21 C 0.04 1.83 5.35 84.66 0.45 2.29 16 22 N -0.91 -41.36 11.57 21.45 0.25 -41.12 16 23 Si 0.96 36.81 29.54 68.60 2.03 38.83 16 24 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 27 C 0.11 4.37 8.03 83.17 0.67 5.04 16 28 H 0.09 2.17 5.71 -2.39 -0.01 2.16 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.76 7.33 -2.39 -0.02 1.74 16 31 H 0.17 2.03 5.69 -2.91 -0.02 2.01 16 32 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.16 3.31 8.06 -2.92 -0.02 3.28 16 34 H 0.08 2.74 6.07 -2.39 -0.01 2.72 16 35 H 0.10 3.30 8.10 -2.38 -0.02 3.28 16 36 H 0.39 18.04 7.03 -74.06 -0.52 17.52 16 37 H 0.27 11.95 8.31 -92.70 -0.77 11.18 16 38 H 0.11 3.82 8.10 -2.39 -0.02 3.80 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -58.52 342.68 3.29 -55.23 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.61 Total: 28.98 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 4.44 Total: 14.16 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -2.90 Total: -67.81 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -2.43 Total: -64.93 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 1.55 Total: -4.46 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.83 kcal Total: -58.52 3.29 -55.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.288 kcal (2) G-P(sol) polarization free energy of solvation -58.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds