Wall clock time and date at job start Tue Mar 31 2020 15:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.50507 * 2 1 4 4 C 1.53095 * 109.50309 * 120.08590 * 2 1 3 5 5 N 1.47023 * 109.25658 * 176.82638 * 4 2 1 6 6 C 1.46894 * 111.00001 * 177.60982 * 5 4 2 7 7 C 1.52997 * 109.47515 * 66.04707 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 S 1.81005 * 109.46857 * 180.02562 * 8 7 6 10 10 C 1.76197 * 99.99772 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00667 * 359.97438 * 10 9 8 12 12 C 1.38806 * 119.99927 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00121 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99877 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47426 * 89.99668 * 14 12 10 16 16 H 1.48504 * 109.47097 * 210.00184 * 14 12 10 17 17 H 1.48508 * 109.47093 * 329.99589 * 14 12 10 18 18 C 1.47015 * 110.75153 * 301.38476 * 5 4 2 19 19 C 1.53105 * 109.25768 * 58.61524 * 18 5 4 20 20 H 1.08998 * 109.50918 * 63.08293 * 19 18 5 21 21 C 1.50701 * 109.54217 * 183.19581 * 19 18 5 22 22 C 1.38422 * 122.53438 * 264.54212 * 21 19 18 23 23 C 1.33396 * 114.92020 * 179.76030 * 22 21 19 24 24 S 1.75885 * 109.58940 * 0.47451 * 23 22 21 25 25 C 1.33385 * 122.53896 * 84.82388 * 21 19 18 26 26 O 1.43010 * 109.54050 * 239.88899 * 2 1 3 27 27 H 1.09002 * 109.47046 * 299.91050 * 1 2 3 28 28 H 1.08995 * 109.47235 * 59.91738 * 1 2 3 29 29 H 1.09004 * 109.47164 * 179.91371 * 1 2 3 30 30 H 1.08996 * 109.51084 * 56.89522 * 4 2 1 31 31 H 1.08998 * 109.54411 * 296.78283 * 4 2 1 32 32 H 1.09002 * 109.47104 * 306.04439 * 6 5 4 33 33 H 1.08998 * 109.46828 * 186.05271 * 6 5 4 34 34 H 1.09002 * 109.47153 * 59.99762 * 7 6 5 35 35 H 1.09001 * 109.46832 * 299.99953 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 38 38 H 0.96999 * 120.00138 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.50334 * 178.54614 * 18 5 4 40 40 H 1.09001 * 109.50713 * 298.68314 * 18 5 4 41 41 H 1.07999 * 122.54617 * 359.97438 * 22 21 19 42 42 H 1.07997 * 125.20638 * 180.20587 * 23 22 21 43 43 H 1.07996 * 125.20787 * 0.03265 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2487 5 7 3.5094 -0.7871 1.2053 6 6 4.0446 -1.4251 2.4154 7 6 3.6175 -2.8938 2.4492 8 6 4.1745 -3.5580 3.7099 9 16 3.6698 -5.2958 3.7495 10 6 4.4262 -5.7998 5.2589 11 1 4.9940 -5.0897 5.8419 12 6 4.2924 -7.1095 5.6989 13 7 4.8570 -7.4858 6.8268 14 14 3.3110 -8.3378 4.6903 15 1 4.2114 -9.0167 3.7240 16 1 2.7033 -9.3473 5.5942 17 1 2.2377 -7.6259 3.9508 18 6 3.9649 -1.4870 -0.0047 19 6 3.4344 -0.7558 -1.2408 20 1 3.8537 0.2496 -1.2769 21 6 3.8316 -1.5116 -2.4826 22 6 4.9608 -1.1946 -3.2178 23 6 5.1707 -1.9655 -4.2861 24 16 3.8867 -3.1608 -4.4122 25 6 3.1187 -2.5330 -2.9597 26 8 2.0084 -0.6761 -1.1659 27 1 -0.3633 0.5125 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3634 -1.0277 -0.0015 30 1 1.6338 -1.7340 1.2763 31 1 1.7266 -0.1798 2.1395 32 1 3.6579 -0.9138 3.2970 33 1 5.1328 -1.3631 2.4077 34 1 4.0042 -3.4050 1.5676 35 1 2.5293 -2.9556 2.4569 36 1 5.2627 -3.4962 3.7027 37 1 3.7875 -3.0467 4.5913 38 1 4.7638 -8.4011 7.1340 39 1 5.0545 -1.4998 -0.0292 40 1 3.5881 -2.5097 0.0028 41 1 5.6237 -0.3868 -2.9452 42 1 5.9997 -1.8676 -4.9713 43 1 2.2088 -2.9157 -2.5214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246517513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:05 Heat of formation + Delta-G solvation = -17.227023 kcal Electronic energy + Delta-G solvation = -23124.858060 eV Core-core repulsion = 19808.640386 eV Total energy + Delta-G solvation = -3316.217674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34606 -38.05729 -36.59375 -33.09813 -32.52991 -32.44170 -29.98687 -28.43299 -26.82789 -25.72721 -25.19087 -23.26909 -22.66056 -21.58539 -19.89396 -19.00420 -17.88400 -17.49673 -16.83990 -16.34990 -15.74598 -15.15937 -15.05428 -14.79630 -14.72070 -14.58399 -14.02350 -13.51453 -13.20167 -13.06316 -12.88757 -12.85064 -12.64536 -12.51448 -12.35495 -12.30375 -11.93164 -11.68937 -11.61371 -11.29046 -11.15104 -11.07913 -11.00523 -10.70041 -10.38065 -10.29425 -9.86480 -9.81049 -9.02681 -9.00235 -8.63606 -8.61233 -8.33630 -6.97371 -6.30381 -4.02955 0.80965 1.44972 1.77698 2.39375 2.99102 3.28190 3.43318 3.43936 3.55587 3.73605 4.29621 4.57487 4.69143 4.73712 4.77595 4.86154 4.93215 4.99113 5.04107 5.08290 5.13084 5.24034 5.26263 5.34093 5.35592 5.42129 5.49555 5.55105 5.67456 5.69775 5.73618 5.79818 5.82382 5.90897 5.98952 6.11616 6.18980 6.24899 6.34560 6.56046 6.83093 6.85770 7.04810 7.93483 8.42266 9.15575 10.79154 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.002967 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.545571 B = 9434.863690 C =10677.406651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.092 3.908 3 H 0.065 0.935 4 C 0.016 3.984 5 N -0.534 5.534 6 C 0.058 3.942 7 C -0.139 4.139 8 C -0.078 4.078 9 S -0.220 6.220 10 C -0.502 4.502 11 H 0.088 0.912 12 C 0.092 3.908 13 N -0.882 5.882 14 Si 0.861 3.139 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.239 1.239 18 C 0.025 3.975 19 C 0.160 3.840 20 H 0.074 0.926 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.215 4.215 24 S 0.093 5.907 25 C -0.176 4.176 26 O -0.376 6.376 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.142 0.858 42 H 0.165 0.835 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 16.662 -21.071 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.034 3.966 3 H 0.083 0.917 4 C -0.112 4.112 5 N -0.257 5.257 6 C -0.071 4.071 7 C -0.179 4.179 8 C -0.227 4.227 9 S 0.008 5.992 10 C -0.649 4.649 11 H 0.106 0.894 12 C -0.116 4.116 13 N -0.519 5.519 14 Si 0.686 3.314 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.163 1.163 18 C -0.104 4.104 19 C 0.099 3.901 20 H 0.092 0.908 21 C -0.118 4.118 22 C -0.154 4.154 23 C -0.350 4.350 24 S 0.357 5.643 25 C -0.312 4.312 26 O -0.296 6.296 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.183 0.817 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.998 15.140 -22.856 27.868 hybrid contribution 0.692 0.239 1.972 2.104 sum -4.306 15.379 -20.884 26.291 Atomic orbital electron populations 1.21748 0.92727 1.03145 1.02578 1.22141 0.94772 0.95484 0.84187 0.91657 1.22893 0.88373 1.00822 0.99101 1.62520 1.08774 1.52020 1.02406 1.22282 1.00571 0.92377 0.91858 1.22003 1.01474 0.96057 0.98318 1.22958 1.02586 0.97982 0.99148 1.84180 1.72196 1.07918 1.34899 1.22115 1.37602 0.99879 1.05318 0.89398 1.24798 0.94716 0.97531 0.94596 1.69936 1.42796 1.18680 1.20442 0.86674 0.82007 0.81887 0.80792 1.19364 1.20054 1.16262 1.22806 1.01313 0.96905 0.89361 1.20480 0.81598 0.97539 0.90456 0.90813 1.18586 0.96654 0.98136 0.98435 1.19954 0.98241 1.01818 0.95346 1.25543 1.04261 1.01374 1.03816 1.84354 1.19063 1.34904 1.25981 1.25519 1.04777 1.00980 0.99874 1.87980 1.20156 1.78555 1.42867 0.90817 0.91665 0.91728 0.93076 0.89578 0.90317 0.90267 0.91320 0.91498 0.91395 0.91378 0.91956 0.89474 0.92783 0.84049 0.81750 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.57 37.16 0.36 -0.82 16 2 C 0.09 0.91 3.42 -26.68 -0.09 0.81 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 4 C 0.02 0.18 4.61 -3.71 -0.02 0.16 16 5 N -0.53 -6.15 4.94 -234.31 -1.16 -7.31 16 6 C 0.06 0.72 5.38 -3.83 -0.02 0.70 16 7 C -0.14 -2.11 4.50 -26.73 -0.12 -2.23 16 8 C -0.08 -1.49 5.67 37.16 0.21 -1.28 16 9 S -0.22 -5.39 19.41 -107.50 -2.09 -7.48 16 10 C -0.50 -14.63 10.04 30.94 0.31 -14.32 16 11 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 12 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 13 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 14 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 18 C 0.02 0.28 4.40 -3.71 -0.02 0.27 16 19 C 0.16 1.71 3.11 -27.83 -0.09 1.62 16 20 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 21 C -0.11 -1.11 4.92 -106.25 -0.52 -1.63 16 22 C -0.12 -1.12 9.96 -41.21 -0.41 -1.53 16 23 C -0.21 -1.82 11.23 29.04 0.33 -1.49 16 24 S 0.09 0.86 23.34 -107.50 -2.51 -1.65 16 25 C -0.18 -1.87 10.52 29.04 0.31 -1.57 16 26 O -0.38 -4.33 9.58 -35.23 -0.34 -4.66 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.62 6.59 -51.93 -0.34 0.28 16 31 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.09 6.42 -51.93 -0.33 0.75 16 35 H 0.07 1.05 6.61 -51.93 -0.34 0.70 16 36 H 0.07 1.31 8.14 -51.91 -0.42 0.89 16 37 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 38 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.71 6.41 -51.93 -0.33 0.38 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.17 1.78 7.97 -52.49 -0.42 1.36 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -31.44 368.68 -11.18 -42.63 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.84 Total: 0.71 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 0.13 Total: -18.70 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: -0.38 Total: -33.40 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.34 Total: -4.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -4.60 Total: -9.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.44 -11.18 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246517513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.400 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds