Wall clock time and date at job start Tue Mar 31 2020 15:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.50507 * 2 1 4 4 C 1.53095 * 109.50309 * 120.08590 * 2 1 3 5 5 N 1.47023 * 109.25658 * 176.82638 * 4 2 1 6 6 C 1.46894 * 111.00001 * 177.60982 * 5 4 2 7 7 C 1.52997 * 109.47515 * 66.04707 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 S 1.81005 * 109.46857 * 180.02562 * 8 7 6 10 10 C 1.76197 * 99.99772 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00667 * 359.97438 * 10 9 8 12 12 C 1.38806 * 119.99927 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00121 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99877 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47426 * 89.99668 * 14 12 10 16 16 H 1.48504 * 109.47097 * 210.00184 * 14 12 10 17 17 H 1.48508 * 109.47093 * 329.99589 * 14 12 10 18 18 C 1.47015 * 110.75153 * 301.38476 * 5 4 2 19 19 C 1.53105 * 109.25768 * 58.61524 * 18 5 4 20 20 H 1.08998 * 109.50918 * 63.08293 * 19 18 5 21 21 C 1.50701 * 109.54217 * 183.19581 * 19 18 5 22 22 C 1.38422 * 122.53438 * 264.54212 * 21 19 18 23 23 C 1.33396 * 114.92020 * 179.76030 * 22 21 19 24 24 S 1.75885 * 109.58940 * 0.47451 * 23 22 21 25 25 C 1.33385 * 122.53896 * 84.82388 * 21 19 18 26 26 O 1.43010 * 109.54050 * 239.88899 * 2 1 3 27 27 H 1.09002 * 109.47046 * 299.91050 * 1 2 3 28 28 H 1.08995 * 109.47235 * 59.91738 * 1 2 3 29 29 H 1.09004 * 109.47164 * 179.91371 * 1 2 3 30 30 H 1.08996 * 109.51084 * 56.89522 * 4 2 1 31 31 H 1.08998 * 109.54411 * 296.78283 * 4 2 1 32 32 H 1.09002 * 109.47104 * 306.04439 * 6 5 4 33 33 H 1.08998 * 109.46828 * 186.05271 * 6 5 4 34 34 H 1.09002 * 109.47153 * 59.99762 * 7 6 5 35 35 H 1.09001 * 109.46832 * 299.99953 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 38 38 H 0.96999 * 120.00138 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.50334 * 178.54614 * 18 5 4 40 40 H 1.09001 * 109.50713 * 298.68314 * 18 5 4 41 41 H 1.07999 * 122.54617 * 359.97438 * 22 21 19 42 42 H 1.07997 * 125.20638 * 180.20587 * 23 22 21 43 43 H 1.07996 * 125.20787 * 0.03265 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2487 5 7 3.5094 -0.7871 1.2053 6 6 4.0446 -1.4251 2.4154 7 6 3.6175 -2.8938 2.4492 8 6 4.1745 -3.5580 3.7099 9 16 3.6698 -5.2958 3.7495 10 6 4.4262 -5.7998 5.2589 11 1 4.9940 -5.0897 5.8419 12 6 4.2924 -7.1095 5.6989 13 7 4.8570 -7.4858 6.8268 14 14 3.3110 -8.3378 4.6903 15 1 4.2114 -9.0167 3.7240 16 1 2.7033 -9.3473 5.5942 17 1 2.2377 -7.6259 3.9508 18 6 3.9649 -1.4870 -0.0047 19 6 3.4344 -0.7558 -1.2408 20 1 3.8537 0.2496 -1.2769 21 6 3.8316 -1.5116 -2.4826 22 6 4.9608 -1.1946 -3.2178 23 6 5.1707 -1.9655 -4.2861 24 16 3.8867 -3.1608 -4.4122 25 6 3.1187 -2.5330 -2.9597 26 8 2.0084 -0.6761 -1.1659 27 1 -0.3633 0.5125 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3634 -1.0277 -0.0015 30 1 1.6338 -1.7340 1.2763 31 1 1.7266 -0.1798 2.1395 32 1 3.6579 -0.9138 3.2970 33 1 5.1328 -1.3631 2.4077 34 1 4.0042 -3.4050 1.5676 35 1 2.5293 -2.9556 2.4569 36 1 5.2627 -3.4962 3.7027 37 1 3.7875 -3.0467 4.5913 38 1 4.7638 -8.4011 7.1340 39 1 5.0545 -1.4998 -0.0292 40 1 3.5881 -2.5097 0.0028 41 1 5.6237 -0.3868 -2.9452 42 1 5.9997 -1.8676 -4.9713 43 1 2.2088 -2.9157 -2.5214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246517513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:04 Heat of formation + Delta-G solvation = -36.279597 kcal Electronic energy + Delta-G solvation = -23125.684241 eV Core-core repulsion = 19808.640386 eV Total energy + Delta-G solvation = -3317.043856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19900 -38.83338 -37.54620 -34.71791 -33.90393 -33.70676 -30.75380 -29.29961 -28.08252 -27.65855 -26.10998 -24.41289 -23.41361 -22.56523 -20.86991 -19.75879 -19.62711 -18.60292 -17.67545 -17.28267 -17.12742 -16.65997 -16.26733 -15.95541 -15.83922 -15.73933 -15.14265 -14.92078 -14.48949 -14.03444 -13.87015 -13.81939 -13.54162 -13.49796 -13.42347 -13.32907 -13.05907 -13.03263 -12.84306 -12.73253 -12.47665 -12.30563 -12.11589 -11.86874 -11.79355 -11.52723 -11.37825 -11.19684 -10.64965 -10.63150 -9.72436 -9.40372 -9.31668 -9.03911 -8.55119 -6.26839 0.08367 0.73625 1.06976 1.09263 1.28306 1.43854 1.66561 1.71632 2.21281 2.65054 2.67800 2.80426 2.82913 3.75142 3.85312 3.87363 3.95435 4.06295 4.08032 4.14769 4.18464 4.29930 4.34976 4.42147 4.50670 4.52895 4.57615 4.68571 4.69389 4.78456 4.84756 4.85903 4.92900 5.00163 5.06630 5.10794 5.22478 5.28967 5.41301 5.51431 5.66913 5.87878 5.91381 6.07136 6.25420 6.89173 8.58047 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.002967 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.545571 B = 9434.863690 C =10677.406651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 H 0.074 0.926 4 C 0.015 3.985 5 N -0.528 5.528 6 C 0.067 3.933 7 C -0.124 4.124 8 C -0.064 4.064 9 S -0.230 6.230 10 C -0.520 4.520 11 H 0.052 0.948 12 C 0.039 3.961 13 N -0.921 5.921 14 Si 0.924 3.076 15 H -0.262 1.262 16 H -0.261 1.261 17 H -0.232 1.232 18 C 0.027 3.973 19 C 0.163 3.837 20 H 0.083 0.917 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.208 4.208 24 S 0.094 5.906 25 C -0.198 4.198 26 O -0.391 6.391 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.277 0.723 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.162 0.838 42 H 0.191 0.809 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 17.812 -22.748 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.033 3.967 3 H 0.092 0.908 4 C -0.113 4.113 5 N -0.251 5.251 6 C -0.063 4.063 7 C -0.164 4.164 8 C -0.213 4.213 9 S -0.003 6.003 10 C -0.668 4.668 11 H 0.070 0.930 12 C -0.166 4.166 13 N -0.559 5.559 14 Si 0.746 3.254 15 H -0.187 1.187 16 H -0.185 1.185 17 H -0.156 1.156 18 C -0.101 4.101 19 C 0.103 3.897 20 H 0.101 0.899 21 C -0.125 4.125 22 C -0.164 4.164 23 C -0.343 4.343 24 S 0.358 5.642 25 C -0.334 4.334 26 O -0.311 6.311 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.179 0.821 42 H 0.208 0.792 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.336 16.302 -24.535 29.937 hybrid contribution 0.848 -0.007 2.491 2.631 sum -4.488 16.295 -22.044 27.778 Atomic orbital electron populations 1.21755 0.91530 1.02829 1.03713 1.22271 0.95731 0.95486 0.83193 0.90800 1.22967 0.87736 1.00234 1.00325 1.62578 1.09320 1.51236 1.01956 1.22219 1.01096 0.90148 0.92840 1.21909 1.01017 0.97703 0.95766 1.23027 1.02698 0.94232 1.01328 1.83931 1.72010 1.12348 1.31967 1.22317 1.37630 0.99713 1.07129 0.92971 1.25756 0.95686 0.99450 0.95689 1.70031 1.44178 1.19631 1.22098 0.85732 0.80725 0.79517 0.79471 1.18676 1.18544 1.15565 1.22788 1.01579 0.95917 0.89819 1.20481 0.81318 0.97804 0.90124 0.89907 1.18772 0.97170 0.98030 0.98524 1.20167 0.98170 1.02672 0.95424 1.25908 1.04282 1.00285 1.03852 1.84322 1.19432 1.35268 1.25198 1.25561 1.05107 1.01783 1.00963 1.87981 1.20635 1.78885 1.43588 0.89023 0.91200 0.92741 0.94756 0.88221 0.89287 0.89579 0.91841 0.91775 0.91423 0.91247 0.91346 0.88938 0.94796 0.82092 0.79201 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.57 71.98 0.69 -1.38 16 2 C 0.09 1.64 3.42 30.63 0.10 1.75 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.02 0.31 4.61 86.31 0.40 0.71 16 5 N -0.53 -11.21 4.94 -895.21 -4.42 -15.63 16 6 C 0.07 1.53 5.38 86.30 0.46 1.99 16 7 C -0.12 -3.63 4.50 30.59 0.14 -3.49 16 8 C -0.06 -2.42 5.67 71.98 0.41 -2.01 16 9 S -0.23 -11.25 19.41 -56.49 -1.10 -12.34 16 10 C -0.52 -30.95 10.04 67.96 0.68 -30.27 16 11 H 0.05 3.36 8.03 -2.91 -0.02 3.34 16 12 C 0.04 2.31 5.50 84.86 0.47 2.78 16 13 N -0.92 -57.04 13.97 21.65 0.30 -56.74 16 14 Si 0.92 44.69 27.74 68.60 1.90 46.59 16 15 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.23 -10.89 6.74 99.48 0.67 -10.22 16 18 C 0.03 0.60 4.40 86.32 0.38 0.98 16 19 C 0.16 3.29 3.11 29.88 0.09 3.38 16 20 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 21 C -0.11 -2.24 4.92 -20.92 -0.10 -2.34 16 22 C -0.13 -2.19 9.96 21.22 0.21 -1.98 16 23 C -0.21 -3.09 11.23 66.72 0.75 -2.34 16 24 S 0.09 1.65 23.34 -56.49 -1.32 0.33 16 25 C -0.20 -4.19 10.52 66.72 0.70 -3.49 16 26 O -0.39 -8.63 9.58 -148.98 -1.43 -10.06 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.03 0.81 6.59 -2.39 -0.02 0.79 16 31 H 0.10 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.09 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.95 6.42 -2.39 -0.02 1.94 16 35 H 0.06 1.94 6.61 -2.39 -0.02 1.92 16 36 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 37 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 38 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.03 0.88 6.41 -2.39 -0.02 0.86 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.16 3.50 7.97 -2.91 -0.02 3.47 16 Total: -1.00 -67.94 368.68 0.27 -67.67 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.94 Total: 15.90 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 5.38 Total: -35.72 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -4.12 Total: -72.37 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.43 Total: -10.06 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Atomic # 16 Polarization: -9.60 SS G_CDS: -2.41 Total: -12.01 kcal Total: -67.94 0.27 -67.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246517513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.392 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds