Wall clock time and date at job start Tue Mar 31 2020 15:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.54413 * 2 1 4 4 C 1.53104 * 109.50838 * 239.88961 * 2 1 3 5 5 N 1.47007 * 109.25679 * 296.91458 * 4 2 1 6 6 C 1.46906 * 111.00272 * 177.60386 * 5 4 2 7 7 C 1.52999 * 109.47171 * 293.96074 * 6 5 4 8 8 C 1.52996 * 109.47118 * 179.97438 * 7 6 5 9 9 S 1.81003 * 109.46982 * 179.97438 * 8 7 6 10 10 C 1.76204 * 99.99937 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99827 * 0.02562 * 10 9 8 12 12 C 1.38796 * 119.99717 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99715 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00443 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47267 * 89.99556 * 14 12 10 16 16 H 1.48498 * 109.47354 * 209.99748 * 14 12 10 17 17 H 1.48504 * 109.47003 * 329.99572 * 14 12 10 18 18 C 1.47011 * 110.75744 * 301.38259 * 5 4 2 19 19 C 1.53094 * 109.25791 * 58.61571 * 18 5 4 20 20 H 1.08998 * 109.54481 * 63.11340 * 19 18 5 21 21 C 1.50702 * 109.50916 * 183.21878 * 19 18 5 22 22 C 1.38423 * 122.54131 * 264.78683 * 21 19 18 23 23 C 1.33391 * 114.92048 * 179.97438 * 22 21 19 24 24 S 1.75886 * 109.59495 * 0.24183 * 23 22 21 25 25 C 1.33390 * 122.53892 * 84.75890 * 21 19 18 26 26 O 1.43014 * 109.26083 * 303.15427 * 19 18 5 27 27 H 1.09003 * 109.47039 * 299.88864 * 1 2 3 28 28 H 1.08996 * 109.47225 * 59.89273 * 1 2 3 29 29 H 1.09005 * 109.47147 * 179.89165 * 1 2 3 30 30 H 1.08998 * 109.50164 * 56.84577 * 4 2 1 31 31 H 1.08996 * 109.50435 * 176.98063 * 4 2 1 32 32 H 1.08999 * 109.46556 * 53.95238 * 6 5 4 33 33 H 1.08993 * 109.47328 * 173.95425 * 6 5 4 34 34 H 1.09003 * 109.46638 * 299.99581 * 7 6 5 35 35 H 1.08998 * 109.47439 * 59.99014 * 7 6 5 36 36 H 1.08999 * 109.46982 * 299.99392 * 8 7 6 37 37 H 1.09000 * 109.47464 * 59.99996 * 8 7 6 38 38 H 0.97001 * 120.00239 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.50755 * 298.68318 * 18 5 4 40 40 H 1.08998 * 109.51058 * 178.55185 * 18 5 4 41 41 H 1.07995 * 122.53847 * 359.97438 * 22 21 19 42 42 H 1.08002 * 125.19887 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.20164 * 0.05977 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 -1.2484 5 7 1.6110 -2.1290 -1.2044 6 6 2.0335 -2.8472 -2.4143 7 6 1.2965 -2.2785 -3.6285 8 6 1.7370 -3.0261 -4.8886 9 16 0.8645 -2.3538 -6.3249 10 6 1.5432 -3.3668 -7.5969 11 1 2.2723 -4.1250 -7.3521 12 6 1.1401 -3.1909 -8.9133 13 7 1.6467 -3.9480 -9.8635 14 14 -0.1215 -1.8799 -9.3368 15 1 0.5739 -0.6034 -9.6401 16 1 -0.9044 -2.3110 -10.5226 17 1 -1.0369 -1.6832 -8.1841 18 6 2.1185 -2.7916 0.0058 19 6 1.6065 -2.0470 1.2416 20 1 0.5188 -2.1065 1.2785 21 6 2.1871 -2.6736 2.4831 22 6 1.5141 -3.6359 3.2160 23 6 2.1691 -4.0871 4.2868 24 16 3.7223 -3.2717 4.4149 25 6 3.3887 -2.3433 2.9588 26 8 2.0075 -0.6763 1.1662 27 1 -0.3633 0.5121 0.8910 28 1 -0.3633 0.5155 -0.8890 29 1 -0.3634 -1.0277 -0.0019 30 1 1.6331 -0.2461 -2.1390 31 1 3.1299 -0.6774 -1.2759 32 1 3.1080 -2.7260 -2.5520 33 1 1.7978 -3.9061 -2.3092 34 1 0.2220 -2.3996 -3.4907 35 1 1.5322 -1.2195 -3.7335 36 1 2.8114 -2.9046 -5.0262 37 1 1.5015 -4.0852 -4.7839 38 1 1.3653 -3.8249 -10.7836 39 1 3.2084 -2.7781 -0.0017 40 1 1.7669 -3.8230 0.0307 41 1 0.5329 -3.9942 2.9416 42 1 1.8002 -4.8352 4.9728 43 1 4.0531 -1.6138 2.5197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246517524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:07 Heat of formation + Delta-G solvation = -15.674800 kcal Electronic energy + Delta-G solvation = -22868.813452 eV Core-core repulsion = 19552.663087 eV Total energy + Delta-G solvation = -3316.150365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47309 -38.11192 -36.45544 -32.88408 -32.68097 -32.44269 -30.01409 -28.63390 -26.78542 -25.76725 -25.26193 -23.30683 -23.15717 -21.00365 -19.70999 -19.04060 -18.09670 -17.49606 -16.75524 -16.48011 -15.46836 -15.32838 -15.14364 -14.98743 -14.65433 -14.52008 -14.26888 -13.65187 -13.37557 -13.18178 -12.89083 -12.83535 -12.79136 -12.41122 -12.25866 -12.00241 -11.98957 -11.79576 -11.52267 -11.43984 -11.11869 -11.06545 -10.97519 -10.57153 -10.39142 -10.20989 -9.89396 -9.72823 -9.10351 -9.01384 -8.71918 -8.57242 -8.48052 -6.95129 -6.29080 -4.01403 0.70266 1.34322 1.66734 2.30318 2.99129 3.29195 3.44624 3.46508 3.51265 3.76008 4.30875 4.56391 4.62371 4.70906 4.78505 4.80871 4.83833 4.96459 4.98124 5.09584 5.14688 5.17108 5.22108 5.30900 5.37562 5.46984 5.57452 5.59620 5.60423 5.68599 5.72158 5.80153 5.81373 5.93678 6.01627 6.12764 6.17627 6.20763 6.44624 6.60362 6.83745 6.88315 6.99023 7.94696 8.43590 9.16773 10.80422 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.002137 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.371561 B =13098.167619 C =13718.571725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.106 0.894 4 C 0.018 3.982 5 N -0.532 5.532 6 C 0.060 3.940 7 C -0.096 4.096 8 C -0.082 4.082 9 S -0.215 6.215 10 C -0.502 4.502 11 H 0.087 0.913 12 C 0.091 3.909 13 N -0.882 5.882 14 Si 0.862 3.138 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.237 1.237 18 C 0.031 3.969 19 C 0.155 3.845 20 H 0.080 0.920 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.213 4.213 24 S 0.090 5.910 25 C -0.179 4.179 26 O -0.375 6.375 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.270 0.730 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.165 0.835 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 4.153 29.455 29.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.034 3.966 3 H 0.123 0.877 4 C -0.110 4.110 5 N -0.257 5.257 6 C -0.069 4.069 7 C -0.135 4.135 8 C -0.231 4.231 9 S 0.013 5.987 10 C -0.649 4.649 11 H 0.106 0.894 12 C -0.117 4.117 13 N -0.519 5.519 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.097 4.097 19 C 0.094 3.906 20 H 0.098 0.902 21 C -0.116 4.116 22 C -0.154 4.154 23 C -0.348 4.348 24 S 0.353 5.647 25 C -0.315 4.315 26 O -0.294 6.294 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.161 0.839 42 H 0.183 0.817 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.956 4.924 30.375 30.786 hybrid contribution 0.085 -0.621 -1.710 1.822 sum 1.041 4.303 28.665 29.005 Atomic orbital electron populations 1.22288 0.95336 1.03599 1.02136 1.22297 0.94607 0.95770 0.83956 0.87659 1.22883 0.98676 0.89816 0.99627 1.62190 1.59564 1.01935 1.01995 1.22188 0.97511 0.98327 0.88834 1.21327 1.01115 0.99664 0.91369 1.23011 1.02132 1.01912 0.96070 1.84144 1.59379 1.52692 1.02489 1.22124 1.29195 1.21537 0.92094 0.89448 1.24806 0.95906 0.95832 0.95193 1.69938 1.42570 1.38497 1.00881 0.86662 0.82582 0.82001 0.80051 1.19401 1.20114 1.16136 1.22728 0.98335 0.98946 0.89728 1.20513 0.98313 0.81612 0.90149 0.90210 1.18635 0.94860 0.99586 0.98530 1.19988 1.01676 0.98354 0.95335 1.25551 0.98578 1.07043 1.03669 1.84330 1.18621 1.35920 1.25820 1.25507 1.00863 1.05192 0.99914 1.88025 1.75652 1.22466 1.43278 0.92509 0.91366 0.90903 0.88775 0.93994 0.94640 0.90486 0.90598 0.91611 0.91662 0.91368 0.91980 0.93954 0.89534 0.83937 0.81706 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.88 37.16 0.33 -1.27 16 2 C 0.09 0.87 3.92 -26.68 -0.10 0.77 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.02 0.19 4.85 -3.71 -0.02 0.17 16 5 N -0.53 -5.99 4.09 -234.32 -0.96 -6.95 16 6 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 7 C -0.10 -1.44 5.15 -26.73 -0.14 -1.57 16 8 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 9 S -0.21 -5.21 19.41 -107.50 -2.09 -7.29 16 10 C -0.50 -14.56 10.04 30.94 0.31 -14.25 16 11 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 12 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 13 N -0.88 -26.79 13.97 55.49 0.78 -26.02 16 14 Si 0.86 21.53 27.74 -169.99 -4.72 16.81 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 18 C 0.03 0.32 4.91 -3.71 -0.02 0.30 16 19 C 0.15 1.52 2.71 -27.83 -0.08 1.44 16 20 H 0.08 0.78 6.46 -51.93 -0.34 0.44 16 21 C -0.10 -0.97 4.92 -106.25 -0.52 -1.49 16 22 C -0.12 -1.00 9.96 -41.21 -0.41 -1.41 16 23 C -0.21 -1.56 11.23 29.04 0.33 -1.23 16 24 S 0.09 0.69 23.34 -107.50 -2.51 -1.82 16 25 C -0.18 -1.64 10.52 29.04 0.31 -1.33 16 26 O -0.37 -4.04 9.75 -35.23 -0.34 -4.39 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.73 6.13 -51.93 -0.32 0.41 16 30 H 0.09 1.01 6.37 -51.93 -0.33 0.68 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.17 1.47 7.97 -52.49 -0.42 1.05 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -31.05 367.76 -11.02 -42.07 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.81 Total: -0.04 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 0.08 Total: -17.93 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: -0.18 Total: -32.96 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.34 Total: -4.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.72 Total: 16.81 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -4.60 Total: -9.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.05 -11.02 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246517524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.393 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds