Wall clock time and date at job start Tue Mar 31 2020 15:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.54413 * 2 1 4 4 C 1.53104 * 109.50838 * 239.88961 * 2 1 3 5 5 N 1.47007 * 109.25679 * 296.91458 * 4 2 1 6 6 C 1.46906 * 111.00272 * 177.60386 * 5 4 2 7 7 C 1.52999 * 109.47171 * 293.96074 * 6 5 4 8 8 C 1.52996 * 109.47118 * 179.97438 * 7 6 5 9 9 S 1.81003 * 109.46982 * 179.97438 * 8 7 6 10 10 C 1.76204 * 99.99937 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99827 * 0.02562 * 10 9 8 12 12 C 1.38796 * 119.99717 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99715 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00443 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47267 * 89.99556 * 14 12 10 16 16 H 1.48498 * 109.47354 * 209.99748 * 14 12 10 17 17 H 1.48504 * 109.47003 * 329.99572 * 14 12 10 18 18 C 1.47011 * 110.75744 * 301.38259 * 5 4 2 19 19 C 1.53094 * 109.25791 * 58.61571 * 18 5 4 20 20 H 1.08998 * 109.54481 * 63.11340 * 19 18 5 21 21 C 1.50702 * 109.50916 * 183.21878 * 19 18 5 22 22 C 1.38423 * 122.54131 * 264.78683 * 21 19 18 23 23 C 1.33391 * 114.92048 * 179.97438 * 22 21 19 24 24 S 1.75886 * 109.59495 * 0.24183 * 23 22 21 25 25 C 1.33390 * 122.53892 * 84.75890 * 21 19 18 26 26 O 1.43014 * 109.26083 * 303.15427 * 19 18 5 27 27 H 1.09003 * 109.47039 * 299.88864 * 1 2 3 28 28 H 1.08996 * 109.47225 * 59.89273 * 1 2 3 29 29 H 1.09005 * 109.47147 * 179.89165 * 1 2 3 30 30 H 1.08998 * 109.50164 * 56.84577 * 4 2 1 31 31 H 1.08996 * 109.50435 * 176.98063 * 4 2 1 32 32 H 1.08999 * 109.46556 * 53.95238 * 6 5 4 33 33 H 1.08993 * 109.47328 * 173.95425 * 6 5 4 34 34 H 1.09003 * 109.46638 * 299.99581 * 7 6 5 35 35 H 1.08998 * 109.47439 * 59.99014 * 7 6 5 36 36 H 1.08999 * 109.46982 * 299.99392 * 8 7 6 37 37 H 1.09000 * 109.47464 * 59.99996 * 8 7 6 38 38 H 0.97001 * 120.00239 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.50755 * 298.68318 * 18 5 4 40 40 H 1.08998 * 109.51058 * 178.55185 * 18 5 4 41 41 H 1.07995 * 122.53847 * 359.97438 * 22 21 19 42 42 H 1.08002 * 125.19887 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.20164 * 0.05977 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 -1.2484 5 7 1.6110 -2.1290 -1.2044 6 6 2.0335 -2.8472 -2.4143 7 6 1.2965 -2.2785 -3.6285 8 6 1.7370 -3.0261 -4.8886 9 16 0.8645 -2.3538 -6.3249 10 6 1.5432 -3.3668 -7.5969 11 1 2.2723 -4.1250 -7.3521 12 6 1.1401 -3.1909 -8.9133 13 7 1.6467 -3.9480 -9.8635 14 14 -0.1215 -1.8799 -9.3368 15 1 0.5739 -0.6034 -9.6401 16 1 -0.9044 -2.3110 -10.5226 17 1 -1.0369 -1.6832 -8.1841 18 6 2.1185 -2.7916 0.0058 19 6 1.6065 -2.0470 1.2416 20 1 0.5188 -2.1065 1.2785 21 6 2.1871 -2.6736 2.4831 22 6 1.5141 -3.6359 3.2160 23 6 2.1691 -4.0871 4.2868 24 16 3.7223 -3.2717 4.4149 25 6 3.3887 -2.3433 2.9588 26 8 2.0075 -0.6763 1.1662 27 1 -0.3633 0.5121 0.8910 28 1 -0.3633 0.5155 -0.8890 29 1 -0.3634 -1.0277 -0.0019 30 1 1.6331 -0.2461 -2.1390 31 1 3.1299 -0.6774 -1.2759 32 1 3.1080 -2.7260 -2.5520 33 1 1.7978 -3.9061 -2.3092 34 1 0.2220 -2.3996 -3.4907 35 1 1.5322 -1.2195 -3.7335 36 1 2.8114 -2.9046 -5.0262 37 1 1.5015 -4.0852 -4.7839 38 1 1.3653 -3.8249 -10.7836 39 1 3.2084 -2.7781 -0.0017 40 1 1.7669 -3.8230 0.0307 41 1 0.5329 -3.9942 2.9416 42 1 1.8002 -4.8352 4.9728 43 1 4.0531 -1.6138 2.5197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246517524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:07 Heat of formation + Delta-G solvation = -33.682361 kcal Electronic energy + Delta-G solvation = -22869.594318 eV Core-core repulsion = 19552.663087 eV Total energy + Delta-G solvation = -3316.931231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26369 -38.79678 -37.39058 -34.69073 -34.07883 -33.41832 -30.74435 -29.42057 -28.05926 -27.63129 -26.22387 -24.26095 -23.88865 -22.15874 -20.48773 -19.71828 -19.62156 -18.73174 -17.57822 -17.30797 -17.10178 -16.47332 -16.24713 -16.01485 -15.96761 -15.43524 -15.29730 -14.97375 -14.69903 -14.05419 -13.98134 -13.74061 -13.62117 -13.42574 -13.39302 -13.34398 -13.02312 -12.87096 -12.80697 -12.64210 -12.42963 -12.26831 -12.06346 -11.75726 -11.72935 -11.54503 -11.24197 -11.16275 -10.67075 -10.54329 -9.72404 -9.42066 -9.31280 -8.98927 -8.52168 -6.23345 0.08170 0.74024 1.06362 1.12615 1.32113 1.47958 1.65648 1.74939 2.24734 2.67356 2.74089 2.79916 2.85836 3.79060 3.83918 3.91154 3.99856 4.05733 4.15720 4.18106 4.23098 4.29854 4.39048 4.43550 4.48020 4.54314 4.61079 4.67502 4.74553 4.75371 4.82476 4.86095 4.97512 5.08714 5.11425 5.14486 5.27155 5.40334 5.41889 5.52347 5.69329 5.92280 5.95079 6.09765 6.23058 6.91814 8.60946 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.002137 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.371561 B =13098.167619 C =13718.571725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.120 0.880 4 C 0.018 3.982 5 N -0.533 5.533 6 C 0.069 3.931 7 C -0.082 4.082 8 C -0.070 4.070 9 S -0.217 6.217 10 C -0.523 4.523 11 H 0.049 0.951 12 C 0.036 3.964 13 N -0.923 5.923 14 Si 0.927 3.073 15 H -0.261 1.261 16 H -0.264 1.264 17 H -0.228 1.228 18 C 0.035 3.965 19 C 0.159 3.841 20 H 0.082 0.918 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.209 4.209 24 S 0.099 5.901 25 C -0.197 4.197 26 O -0.387 6.387 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.277 0.723 39 H 0.034 0.966 40 H 0.093 0.907 41 H 0.158 0.842 42 H 0.189 0.811 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 5.058 31.168 31.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.137 0.863 4 C -0.110 4.110 5 N -0.257 5.257 6 C -0.061 4.061 7 C -0.121 4.121 8 C -0.219 4.219 9 S 0.011 5.989 10 C -0.670 4.670 11 H 0.067 0.933 12 C -0.169 4.169 13 N -0.561 5.561 14 Si 0.748 3.252 15 H -0.186 1.186 16 H -0.188 1.188 17 H -0.151 1.151 18 C -0.093 4.093 19 C 0.098 3.902 20 H 0.100 0.900 21 C -0.126 4.126 22 C -0.166 4.166 23 C -0.344 4.344 24 S 0.363 5.637 25 C -0.333 4.333 26 O -0.306 6.306 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.111 0.889 41 H 0.175 0.825 42 H 0.206 0.794 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.226 5.825 32.103 32.628 hybrid contribution 0.554 -0.974 -2.134 2.410 sum 0.328 4.851 29.969 30.361 Atomic orbital electron populations 1.22233 0.94841 1.03115 1.02617 1.22395 0.94965 0.96188 0.83097 0.86279 1.22917 0.98374 0.89503 1.00246 1.62167 1.59578 1.02241 1.01737 1.22018 0.96984 0.98607 0.88446 1.21189 1.01253 0.99398 0.90214 1.23071 1.01309 1.02126 0.95391 1.83815 1.60020 1.52059 1.02991 1.22352 1.28795 1.21630 0.94242 0.93252 1.25814 0.97969 0.98106 0.95008 1.70042 1.44171 1.40315 1.01585 0.85692 0.80089 0.79050 0.80379 1.18593 1.18814 1.15085 1.22726 0.97813 0.99343 0.89461 1.20491 0.98356 0.81185 0.90132 0.90018 1.18757 0.95118 1.00084 0.98600 1.20165 1.02477 0.98390 0.95582 1.25899 0.97974 1.06905 1.03623 1.84288 1.19027 1.35536 1.24882 1.25588 1.01067 1.05751 1.00847 1.88021 1.75932 1.22974 1.43689 0.91945 0.90956 0.91812 0.88812 0.94557 0.94775 0.89942 0.90584 0.91148 0.91970 0.91550 0.91417 0.94766 0.88872 0.82483 0.79355 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.88 71.98 0.64 -2.16 16 2 C 0.09 1.60 3.92 30.63 0.12 1.72 16 3 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.02 0.35 4.85 86.32 0.42 0.77 16 5 N -0.53 -11.17 4.09 -895.24 -3.66 -14.84 16 6 C 0.07 1.62 4.96 86.30 0.43 2.05 16 7 C -0.08 -2.31 5.15 30.59 0.16 -2.15 16 8 C -0.07 -2.62 5.67 71.98 0.41 -2.21 16 9 S -0.22 -10.35 19.41 -56.49 -1.10 -11.44 16 10 C -0.52 -30.89 10.04 67.95 0.68 -30.21 16 11 H 0.05 3.18 8.03 -2.91 -0.02 3.16 16 12 C 0.04 2.10 5.50 84.86 0.47 2.56 16 13 N -0.92 -57.04 13.97 21.65 0.30 -56.73 16 14 Si 0.93 44.06 27.74 68.60 1.90 45.96 16 15 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.23 -10.37 6.74 99.48 0.67 -9.70 16 18 C 0.04 0.68 4.91 86.31 0.42 1.10 16 19 C 0.16 2.92 2.71 29.88 0.08 3.00 16 20 H 0.08 1.47 6.46 -2.39 -0.02 1.45 16 21 C -0.11 -1.98 4.92 -20.92 -0.10 -2.08 16 22 C -0.14 -1.97 9.96 21.22 0.21 -1.76 16 23 C -0.21 -2.62 11.23 66.72 0.75 -1.87 16 24 S 0.10 1.41 23.34 -56.49 -1.32 0.09 16 25 C -0.20 -3.46 10.52 66.72 0.70 -2.75 16 26 O -0.39 -7.88 9.75 -148.98 -1.45 -9.34 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.17 6.13 -2.38 -0.01 1.15 16 30 H 0.09 1.85 6.37 -2.39 -0.02 1.84 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 33 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 1.95 6.51 -2.39 -0.02 1.94 16 36 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 37 H 0.07 2.51 8.14 -2.40 -0.02 2.49 16 38 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 43 H 0.16 2.86 7.97 -2.91 -0.02 2.84 16 Total: -1.00 -66.62 367.76 1.00 -65.61 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.95 Total: 14.69 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 5.38 Total: -34.00 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -3.36 Total: -71.57 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.45 Total: -9.34 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -2.42 Total: -11.36 kcal Total: -66.62 1.00 -65.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246517524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.932 kcal (2) G-P(sol) polarization free energy of solvation -66.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds