Wall clock time and date at job start Tue Mar 31 2020 15:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47184 * 2 1 4 4 C 1.50697 * 109.47377 * 120.00245 * 2 1 3 5 5 H 1.07998 * 120.00157 * 119.99924 * 4 2 1 6 6 C 1.37881 * 119.99790 * 300.00042 * 4 2 1 7 7 N 1.31522 * 119.99710 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00338 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47174 * 89.99479 * 8 6 4 10 10 H 1.48491 * 109.47390 * 210.00077 * 8 6 4 11 11 H 1.48500 * 109.46841 * 330.00451 * 8 6 4 12 12 S 1.81397 * 109.47290 * 240.00254 * 2 1 3 13 13 C 1.76201 * 102.99881 * 68.23178 * 12 2 1 14 14 C 1.38770 * 120.16343 * 5.66154 * 13 12 2 15 15 C 1.38156 * 120.06828 * 180.29746 * 14 13 12 16 16 C 1.38483 * 120.39894 * 359.68066 * 15 14 13 17 17 C 1.37947 * 120.32627 * 0.02562 * 16 15 14 18 18 C 1.39592 * 119.91799 * 359.97438 * 17 16 15 19 19 N 1.36739 * 120.19145 * 180.02562 * 18 17 16 20 20 C 1.30385 * 119.99732 * 311.45561 * 19 18 17 21 21 C 1.47044 * 119.99517 * 174.15534 * 20 19 18 22 22 C 1.39855 * 120.20510 * 179.97438 * 21 20 19 23 23 C 1.37800 * 119.88756 * 179.97438 * 22 21 20 24 24 C 1.38528 * 120.30540 * 0.02562 * 23 22 21 25 25 C 1.38155 * 120.41844 * 359.97438 * 24 23 22 26 26 C 1.38576 * 120.10992 * 359.97438 * 25 24 23 27 27 O 1.35728 * 120.15350 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.46839 * 187.77179 * 1 2 3 29 29 H 1.09002 * 109.46859 * 307.76970 * 1 2 3 30 30 H 1.09003 * 109.47045 * 67.77400 * 1 2 3 31 31 H 0.97000 * 119.99739 * 180.02562 * 7 6 4 32 32 H 1.07995 * 119.96094 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.79749 * 179.69826 * 15 14 13 34 34 H 1.07999 * 119.83261 * 180.02562 * 16 15 14 35 35 H 1.07997 * 120.04042 * 180.02562 * 17 16 15 36 36 H 1.07995 * 120.00073 * 354.15128 * 20 19 18 37 37 H 1.08004 * 120.05649 * 0.04586 * 22 21 20 38 38 H 1.08000 * 119.84630 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.78954 * 180.27595 * 24 23 22 40 40 H 1.08006 * 119.94509 * 180.02562 * 25 24 23 41 41 H 0.96698 * 113.99474 * 90.00150 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9773 1.9952 3.9071 11 1 0.8491 2.1772 1.4924 12 16 2.1347 -0.8550 -1.4811 13 6 1.6666 0.2329 -2.7857 14 6 1.1032 1.4675 -2.4957 15 6 0.7312 2.3164 -3.5203 16 6 0.9227 1.9468 -4.8410 17 6 1.4868 0.7259 -5.1479 18 6 1.8676 -0.1423 -4.1233 19 7 2.4278 -1.3536 -4.4210 20 6 1.8678 -2.1311 -5.3054 21 6 2.5360 -3.3736 -5.7200 22 6 1.9390 -4.2110 -6.6678 23 6 2.5712 -5.3736 -7.0520 24 6 3.7958 -5.7175 -6.5034 25 6 4.3969 -4.8996 -5.5661 26 6 3.7769 -3.7260 -5.1680 27 8 4.3669 -2.9215 -4.2477 28 1 -0.3633 -1.0182 0.1390 29 1 -0.3633 0.6295 0.8124 30 1 -0.3633 0.3887 -0.9513 31 1 1.9027 -0.5286 4.4375 32 1 0.9507 1.7628 -1.4682 33 1 0.2887 3.2742 -3.2897 34 1 0.6289 2.6177 -5.6347 35 1 1.6344 0.4424 -6.1795 36 1 0.9133 -1.8625 -5.7332 37 1 0.9847 -3.9464 -7.0988 38 1 2.1098 -6.0195 -7.7843 39 1 4.2861 -6.6284 -6.8138 40 1 5.3520 -5.1750 -5.1436 41 1 4.9506 -2.2509 -4.6281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255068477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:22 Heat of formation + Delta-G solvation = 43.140072 kcal Electronic energy + Delta-G solvation = -24086.739765 eV Core-core repulsion = 20637.695853 eV Total energy + Delta-G solvation = -3449.043912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92459 -39.08669 -36.52090 -35.93495 -34.21326 -31.86200 -31.56331 -30.49302 -30.06927 -28.76791 -25.28650 -24.68379 -22.72697 -22.59758 -22.18687 -21.31584 -20.03449 -18.18024 -17.63944 -16.73997 -16.47914 -16.39541 -15.52493 -15.20170 -15.17049 -14.75869 -14.38908 -14.24246 -13.85417 -13.79974 -13.69664 -13.01411 -12.89734 -12.63589 -12.36873 -12.12564 -12.05859 -11.79094 -11.64174 -11.45300 -11.18361 -10.98631 -10.69806 -10.50277 -10.37528 -9.87832 -9.66050 -9.55754 -9.25493 -9.01884 -8.85670 -8.72601 -8.63384 -8.09582 -6.56104 -6.22040 -4.25472 0.45615 1.16789 1.41898 1.48704 2.40974 2.52955 3.16995 3.24271 3.28785 3.52026 3.59834 3.87178 4.13685 4.25902 4.27842 4.59412 4.80631 4.89714 4.99734 5.07689 5.11989 5.13835 5.29449 5.44271 5.47601 5.62668 5.71095 5.77863 5.95890 6.03486 6.09667 6.19815 6.22685 6.25403 6.27164 6.30209 6.45055 6.48875 6.59637 6.64521 6.65373 7.01849 7.07201 7.39425 7.84228 8.00961 8.26031 8.79163 9.33815 10.89825 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.003599 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.627984 B = 7778.063728 C = 9308.466199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.509 4.509 5 H 0.086 0.914 6 C 0.084 3.916 7 N -0.888 5.888 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.268 1.268 12 S -0.061 6.061 13 C -0.066 4.066 14 C -0.130 4.130 15 C -0.107 4.107 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.077 3.923 19 N -0.428 5.428 20 C 0.180 3.820 21 C -0.101 4.101 22 C -0.076 4.076 23 C -0.142 4.142 24 C -0.090 4.090 25 C -0.159 4.159 26 C 0.159 3.841 27 O -0.464 6.464 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.269 0.731 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -2.370 -23.874 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.098 4.098 3 H 0.067 0.933 4 C -0.548 4.548 5 H 0.104 0.896 6 C -0.121 4.121 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.193 1.193 12 S 0.191 5.809 13 C -0.181 4.181 14 C -0.155 4.155 15 C -0.127 4.127 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.030 4.030 19 N -0.131 5.131 20 C -0.023 4.023 21 C -0.102 4.102 22 C -0.096 4.096 23 C -0.160 4.160 24 C -0.109 4.109 25 C -0.177 4.177 26 C 0.111 3.889 27 O -0.274 6.274 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.177 -3.704 -22.479 22.783 hybrid contribution -1.733 2.615 -0.326 3.154 sum -1.556 -1.090 -22.806 22.885 Atomic orbital electron populations 1.22513 0.97221 1.02406 0.99185 1.21533 0.94846 0.98731 0.94647 0.93350 1.20365 1.33236 1.14252 0.86920 0.89627 1.24845 0.95410 0.96598 0.95263 1.69853 1.44661 1.39956 0.98014 0.86847 0.80798 0.83492 0.77212 1.20174 1.21908 1.19294 1.85979 1.70222 1.28482 0.96217 1.22234 1.01035 0.98346 0.96522 1.21341 1.00725 0.93150 1.00326 1.21062 0.99834 0.99245 0.92576 1.20827 1.01494 0.96639 0.96331 1.21389 1.00501 0.96061 0.97417 1.18345 0.99612 0.92988 0.92088 1.68547 1.30820 1.02411 1.11279 1.24122 0.95449 0.91824 0.90938 1.19263 0.96337 0.95434 0.99183 1.21178 0.99302 0.93643 0.95511 1.21011 0.96015 0.97347 1.01605 1.21163 0.95166 0.98895 0.95642 1.21501 1.01439 0.95829 0.98946 1.18745 0.91231 0.91096 0.87790 1.84896 1.64150 1.47738 1.30600 0.91500 0.93495 0.94243 0.92133 0.84922 0.86160 0.86264 0.86281 0.87811 0.85251 0.85606 0.85668 0.85142 0.75332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.01 37.16 0.30 -3.12 16 2 C 0.03 0.76 1.57 -27.88 -0.04 0.72 16 3 H 0.05 1.18 6.04 -51.92 -0.31 0.87 16 4 C -0.51 -14.47 9.15 -34.44 -0.32 -14.79 16 5 H 0.09 2.68 7.96 -52.49 -0.42 2.27 16 6 C 0.08 2.39 5.45 -17.81 -0.10 2.29 16 7 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 8 Si 0.89 21.48 24.30 -169.99 -4.13 17.35 16 9 H -0.28 -6.46 6.94 56.52 0.39 -6.07 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.15 6.52 56.52 0.37 -5.78 16 12 S -0.06 -1.38 20.68 -107.50 -2.22 -3.61 16 13 C -0.07 -1.27 5.98 -38.58 -0.23 -1.50 16 14 C -0.13 -2.31 7.95 -39.41 -0.31 -2.62 16 15 C -0.11 -1.54 10.03 -39.52 -0.40 -1.94 16 16 C -0.13 -1.69 10.03 -39.60 -0.40 -2.09 16 17 C -0.13 -1.82 9.30 -39.18 -0.36 -2.18 16 18 C 0.08 1.31 6.13 -84.37 -0.52 0.79 16 19 N -0.43 -6.88 7.57 -8.93 -0.07 -6.95 16 20 C 0.18 2.35 9.84 -14.60 -0.14 2.20 16 21 C -0.10 -1.19 5.88 -104.94 -0.62 -1.80 16 22 C -0.08 -0.68 9.79 -39.14 -0.38 -1.07 16 23 C -0.14 -1.13 10.02 -39.63 -0.40 -1.53 16 24 C -0.09 -0.75 10.03 -39.51 -0.40 -1.15 16 25 C -0.16 -1.64 9.97 -39.49 -0.39 -2.03 16 26 C 0.16 2.00 6.72 -38.68 -0.26 1.74 16 27 O -0.46 -6.63 11.37 -18.89 -0.21 -6.85 16 28 H 0.07 1.50 8.13 -51.93 -0.42 1.07 16 29 H 0.05 1.04 3.53 -51.93 -0.18 0.86 16 30 H 0.04 0.77 5.90 -51.93 -0.31 0.46 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.13 2.47 4.95 -52.49 -0.26 2.21 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.33 7.85 -52.49 -0.41 0.92 16 36 H 0.10 1.12 7.80 -52.49 -0.41 0.71 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.39 4.20 9.06 45.56 0.41 4.61 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -33.11 352.18 -9.55 -42.66 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.03 Total: 6.22 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -4.97 Total: -28.07 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.71 Total: -33.02 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.21 Total: -6.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.13 Total: 17.35 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.22 Total: -3.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.11 -9.55 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255068477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.801 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds