Wall clock time and date at job start Tue Mar 31 2020 15:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47184 * 2 1 4 4 C 1.50697 * 109.47377 * 120.00245 * 2 1 3 5 5 H 1.07998 * 120.00157 * 119.99924 * 4 2 1 6 6 C 1.37881 * 119.99790 * 300.00042 * 4 2 1 7 7 N 1.31522 * 119.99710 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00338 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47174 * 89.99479 * 8 6 4 10 10 H 1.48491 * 109.47390 * 210.00077 * 8 6 4 11 11 H 1.48500 * 109.46841 * 330.00451 * 8 6 4 12 12 S 1.81397 * 109.47290 * 240.00254 * 2 1 3 13 13 C 1.76201 * 102.99881 * 68.23178 * 12 2 1 14 14 C 1.38770 * 120.16343 * 5.66154 * 13 12 2 15 15 C 1.38156 * 120.06828 * 180.29746 * 14 13 12 16 16 C 1.38483 * 120.39894 * 359.68066 * 15 14 13 17 17 C 1.37947 * 120.32627 * 0.02562 * 16 15 14 18 18 C 1.39592 * 119.91799 * 359.97438 * 17 16 15 19 19 N 1.36739 * 120.19145 * 180.02562 * 18 17 16 20 20 C 1.30385 * 119.99732 * 311.45561 * 19 18 17 21 21 C 1.47044 * 119.99517 * 174.15534 * 20 19 18 22 22 C 1.39855 * 120.20510 * 179.97438 * 21 20 19 23 23 C 1.37800 * 119.88756 * 179.97438 * 22 21 20 24 24 C 1.38528 * 120.30540 * 0.02562 * 23 22 21 25 25 C 1.38155 * 120.41844 * 359.97438 * 24 23 22 26 26 C 1.38576 * 120.10992 * 359.97438 * 25 24 23 27 27 O 1.35728 * 120.15350 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.46839 * 187.77179 * 1 2 3 29 29 H 1.09002 * 109.46859 * 307.76970 * 1 2 3 30 30 H 1.09003 * 109.47045 * 67.77400 * 1 2 3 31 31 H 0.97000 * 119.99739 * 180.02562 * 7 6 4 32 32 H 1.07995 * 119.96094 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.79749 * 179.69826 * 15 14 13 34 34 H 1.07999 * 119.83261 * 180.02562 * 16 15 14 35 35 H 1.07997 * 120.04042 * 180.02562 * 17 16 15 36 36 H 1.07995 * 120.00073 * 354.15128 * 20 19 18 37 37 H 1.08004 * 120.05649 * 0.04586 * 22 21 20 38 38 H 1.08000 * 119.84630 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.78954 * 180.27595 * 24 23 22 40 40 H 1.08006 * 119.94509 * 180.02562 * 25 24 23 41 41 H 0.96698 * 113.99474 * 90.00150 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9773 1.9952 3.9071 11 1 0.8491 2.1772 1.4924 12 16 2.1347 -0.8550 -1.4811 13 6 1.6666 0.2329 -2.7857 14 6 1.1032 1.4675 -2.4957 15 6 0.7312 2.3164 -3.5203 16 6 0.9227 1.9468 -4.8410 17 6 1.4868 0.7259 -5.1479 18 6 1.8676 -0.1423 -4.1233 19 7 2.4278 -1.3536 -4.4210 20 6 1.8678 -2.1311 -5.3054 21 6 2.5360 -3.3736 -5.7200 22 6 1.9390 -4.2110 -6.6678 23 6 2.5712 -5.3736 -7.0520 24 6 3.7958 -5.7175 -6.5034 25 6 4.3969 -4.8996 -5.5661 26 6 3.7769 -3.7260 -5.1680 27 8 4.3669 -2.9215 -4.2477 28 1 -0.3633 -1.0182 0.1390 29 1 -0.3633 0.6295 0.8124 30 1 -0.3633 0.3887 -0.9513 31 1 1.9027 -0.5286 4.4375 32 1 0.9507 1.7628 -1.4682 33 1 0.2887 3.2742 -3.2897 34 1 0.6289 2.6177 -5.6347 35 1 1.6344 0.4424 -6.1795 36 1 0.9133 -1.8625 -5.7332 37 1 0.9847 -3.9464 -7.0988 38 1 2.1098 -6.0195 -7.7843 39 1 4.2861 -6.6284 -6.8138 40 1 5.3520 -5.1750 -5.1436 41 1 4.9506 -2.2509 -4.6281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255068477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:22 Heat of formation + Delta-G solvation = 22.122678 kcal Electronic energy + Delta-G solvation = -24087.651147 eV Core-core repulsion = 20637.695853 eV Total energy + Delta-G solvation = -3449.955294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82929 -40.15853 -37.41618 -37.06789 -36.16681 -33.53746 -32.71196 -31.84152 -30.89769 -29.76626 -27.33658 -25.66266 -23.80432 -23.72645 -23.42556 -22.73119 -21.07554 -19.31220 -18.98504 -18.47650 -17.71484 -17.27557 -16.96275 -16.36109 -16.25993 -15.97235 -15.73671 -15.40927 -15.15980 -15.07451 -14.84976 -14.61910 -14.17132 -13.91595 -13.67743 -13.48277 -13.20269 -13.00342 -12.89407 -12.60444 -12.47648 -12.42871 -12.29077 -11.95831 -11.69476 -11.54271 -11.38475 -10.97476 -10.82763 -10.61126 -10.50667 -9.79985 -9.54081 -9.17684 -8.43122 -8.15400 -6.52984 -0.46472 0.29073 0.40398 0.42820 0.82483 1.23513 1.28554 1.39276 1.56488 1.86551 2.21126 2.71307 2.85005 2.89669 3.17840 3.43687 3.72065 3.89024 4.10380 4.12851 4.21362 4.23272 4.36749 4.38215 4.42701 4.45130 4.47827 4.56666 4.60449 4.73354 4.78505 4.90754 5.05834 5.07864 5.22762 5.27101 5.31346 5.37956 5.48591 5.51437 5.52079 5.56926 5.93346 5.95313 6.02724 6.49252 6.94676 7.00433 7.10251 8.73223 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.003599 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.627984 B = 7778.063728 C = 9308.466199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 H 0.045 0.955 4 C -0.521 4.521 5 H 0.034 0.966 6 C 0.028 3.972 7 N -0.937 5.937 8 Si 0.952 3.048 9 H -0.257 1.257 10 H -0.288 1.288 11 H -0.247 1.247 12 S -0.125 6.125 13 C -0.096 4.096 14 C -0.143 4.143 15 C -0.110 4.110 16 C -0.107 4.107 17 C -0.133 4.133 18 C 0.078 3.922 19 N -0.475 5.475 20 C 0.198 3.802 21 C -0.129 4.129 22 C -0.067 4.067 23 C -0.138 4.138 24 C -0.082 4.082 25 C -0.175 4.175 26 C 0.131 3.869 27 O -0.492 6.492 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.273 0.727 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 -1.044 -28.206 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 H 0.063 0.937 4 C -0.560 4.560 5 H 0.052 0.948 6 C -0.173 4.173 7 N -0.576 5.576 8 Si 0.777 3.223 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.171 1.171 12 S 0.123 5.877 13 C -0.211 4.211 14 C -0.168 4.168 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.154 4.154 18 C -0.029 4.029 19 N -0.178 5.178 20 C -0.004 4.004 21 C -0.130 4.130 22 C -0.087 4.087 23 C -0.156 4.156 24 C -0.101 4.101 25 C -0.193 4.193 26 C 0.084 3.916 27 O -0.303 6.303 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.319 -2.371 -26.868 27.072 hybrid contribution -0.858 2.010 0.715 2.300 sum -3.177 -0.361 -26.153 26.347 Atomic orbital electron populations 1.22370 0.95304 1.01939 1.00681 1.21232 0.96149 0.97709 0.93555 0.93684 1.20529 1.32802 1.13171 0.89507 0.94752 1.25790 0.96812 1.00167 0.94498 1.70005 1.46529 1.42221 0.98803 0.85794 0.79323 0.79290 0.77924 1.18250 1.21470 1.17060 1.86000 1.72704 1.31023 0.97932 1.22082 1.04619 0.98614 0.95771 1.21357 1.01420 0.93314 1.00695 1.21400 0.99445 0.99792 0.92403 1.21360 0.98443 0.96286 0.96771 1.21755 0.99844 0.95804 0.98031 1.18629 0.98537 0.94013 0.91726 1.68515 1.32478 1.03223 1.13628 1.24564 0.95795 0.91336 0.88717 1.19453 0.96540 0.96106 1.00917 1.21561 1.00098 0.93113 0.93922 1.21468 0.95488 0.97160 1.01480 1.21572 0.95302 0.99114 0.94083 1.21655 1.01988 0.95699 0.99957 1.19128 0.92184 0.91827 0.88506 1.84868 1.64698 1.48463 1.32309 0.92654 0.93165 0.91632 0.91758 0.86499 0.83131 0.81897 0.83232 0.85213 0.82252 0.82127 0.82827 0.84941 0.74672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.42 8.01 71.98 0.58 -5.84 16 2 C 0.04 2.15 1.57 29.85 0.05 2.19 16 3 H 0.05 2.27 6.04 -2.39 -0.01 2.25 16 4 C -0.52 -31.63 9.15 25.60 0.23 -31.40 16 5 H 0.03 2.37 7.96 -2.91 -0.02 2.34 16 6 C 0.03 1.64 5.45 84.65 0.46 2.10 16 7 N -0.94 -59.43 13.96 21.45 0.30 -59.14 16 8 Si 0.95 44.65 24.30 68.60 1.67 46.32 16 9 H -0.26 -11.29 6.94 99.48 0.69 -10.60 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 12 S -0.13 -6.03 20.68 -56.49 -1.17 -7.19 16 13 C -0.10 -3.74 5.98 22.92 0.14 -3.60 16 14 C -0.14 -4.94 7.95 22.38 0.18 -4.76 16 15 C -0.11 -2.80 10.03 22.31 0.22 -2.58 16 16 C -0.11 -2.27 10.03 22.26 0.22 -2.04 16 17 C -0.13 -3.21 9.30 22.53 0.21 -3.00 16 18 C 0.08 2.57 6.13 39.22 0.24 2.81 16 19 N -0.47 -15.42 7.57 -182.17 -1.38 -16.79 16 20 C 0.20 4.93 9.84 87.22 0.86 5.79 16 21 C -0.13 -2.91 5.88 -20.07 -0.12 -3.03 16 22 C -0.07 -0.99 9.79 22.56 0.22 -0.77 16 23 C -0.14 -1.69 10.02 22.24 0.22 -1.47 16 24 C -0.08 -1.18 10.03 22.32 0.22 -0.95 16 25 C -0.17 -3.58 9.97 22.33 0.22 -3.35 16 26 C 0.13 3.38 6.72 22.86 0.15 3.53 16 27 O -0.49 -15.34 11.37 -90.51 -1.03 -16.37 16 28 H 0.05 2.54 8.13 -2.39 -0.02 2.52 16 29 H 0.05 2.16 3.53 -2.39 -0.01 2.16 16 30 H 0.06 2.54 5.90 -2.39 -0.01 2.53 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.12 4.31 4.95 -2.91 -0.01 4.30 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 2.66 7.85 -2.91 -0.02 2.64 16 36 H 0.13 2.42 7.80 -2.91 -0.02 2.40 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.40 9.74 9.06 -74.06 -0.67 9.07 16 Total: -1.00 -79.42 352.18 3.03 -76.39 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.32 Total: 23.13 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 4.31 Total: -46.35 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -1.08 Total: -75.93 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.03 Total: -16.37 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Atomic # 16 Polarization: -6.03 SS G_CDS: -1.17 Total: -7.19 kcal Total: -79.42 3.03 -76.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255068477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.515 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds