Wall clock time and date at job start Tue Mar 31 2020 14:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.84337 * 2 1 4 4 C 1.52440 * 109.79707 * 239.16157 * 2 1 3 5 5 C 1.39122 * 123.57517 * 48.97732 * 4 2 1 6 6 C 1.32931 * 115.65579 * 179.45136 * 5 4 2 7 7 S 1.75718 * 109.58442 * 0.07280 * 6 5 4 8 8 C 1.34649 * 122.62068 * 228.64903 * 4 2 1 9 9 C 1.51398 * 125.09845 * 0.78892 * 8 4 2 10 10 C 1.53198 * 109.06658 * 341.74558 * 9 8 4 11 11 N 1.46972 * 109.79834 * 120.83817 * 2 1 3 12 12 C 1.34784 * 120.86283 * 344.69838 * 11 2 1 13 13 O 1.21581 * 119.99903 * 354.33414 * 12 11 2 14 14 C 1.47642 * 119.99720 * 174.32917 * 12 11 2 15 15 C 1.40004 * 119.89663 * 320.51161 * 14 12 11 16 16 C 1.36325 * 120.10295 * 179.76144 * 15 14 12 17 17 C 1.40889 * 119.89157 * 0.51303 * 16 15 14 18 18 C 1.41105 * 120.10194 * 179.71871 * 17 16 15 19 19 H 1.08002 * 119.99842 * 208.38623 * 18 17 16 20 20 C 1.40227 * 120.00135 * 28.38316 * 18 17 16 21 21 N 1.30648 * 120.00123 * 9.14612 * 20 18 17 22 22 Si 1.86799 * 120.00233 * 189.14140 * 20 18 17 23 23 H 1.48500 * 109.47054 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47179 * 120.00208 * 22 20 18 25 25 H 1.48495 * 109.47269 * 240.00262 * 22 20 18 26 26 C 1.40885 * 119.79092 * 359.73984 * 17 16 15 27 27 C 1.36316 * 119.89618 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.47038 * 191.06843 * 1 2 3 29 29 H 1.08997 * 109.46841 * 311.07111 * 1 2 3 30 30 H 1.09001 * 109.46743 * 71.06754 * 1 2 3 31 31 H 1.08007 * 122.17533 * 359.43027 * 5 4 2 32 32 H 1.07993 * 125.20607 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.53836 * 101.61625 * 9 8 4 34 34 H 1.08999 * 109.53944 * 221.86631 * 9 8 4 35 35 H 1.08993 * 109.61735 * 165.27383 * 10 9 8 36 36 H 1.09004 * 109.61706 * 285.63631 * 10 9 8 37 37 H 1.07994 * 119.94958 * 0.02562 * 15 14 12 38 38 H 1.08002 * 120.05351 * 180.27696 * 16 15 14 39 39 H 0.97000 * 120.00328 * 179.97438 * 21 20 18 40 40 H 1.08006 * 120.05261 * 180.02562 * 26 17 16 41 41 H 1.07995 * 119.94502 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0463 -0.7353 -1.2315 5 6 1.5911 -0.4876 -2.5226 6 6 2.1582 -1.2124 -3.4818 7 16 3.3483 -2.2955 -2.7760 8 6 2.9971 -1.6862 -1.1636 9 6 3.6615 -2.1636 0.1103 10 6 3.4390 -1.1219 1.2114 11 7 2.0278 -0.7089 1.1873 12 6 1.2120 -0.9740 2.2270 13 8 0.0774 -0.5371 2.2362 14 6 1.6962 -1.7949 3.3545 15 6 2.5086 -2.9083 3.1088 16 6 2.9620 -3.6665 4.1471 17 6 2.6029 -3.3343 5.4683 18 6 3.0648 -4.1195 6.5459 19 1 2.4822 -4.1881 7.4527 20 6 4.2802 -4.8107 6.4394 21 7 5.0701 -4.5902 5.4224 22 14 4.7700 -6.0465 7.7517 23 1 3.7102 -6.1124 8.7898 24 1 4.9393 -7.3855 7.1322 25 1 6.0496 -5.6247 8.3761 26 6 1.7807 -2.2160 5.7101 27 6 1.3361 -1.4611 4.6658 28 1 -0.3633 -1.0086 0.1973 29 1 -0.3633 0.6752 0.7747 30 1 -0.3633 0.3334 -0.9721 31 1 0.8262 0.2457 -2.7320 32 1 1.9230 -1.1462 -4.5337 33 1 3.2249 -3.1147 0.4148 34 1 4.7305 -2.2900 -0.0613 35 1 3.6762 -1.5585 2.1815 36 1 4.0791 -0.2579 1.0325 37 1 2.7800 -3.1645 2.0954 38 1 3.5923 -4.5226 3.9569 39 1 5.9111 -5.0681 5.3489 40 1 1.5032 -1.9573 6.7213 41 1 0.7056 -0.6040 4.8502 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270192533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:44 Heat of formation + Delta-G solvation = 32.465638 kcal Electronic energy + Delta-G solvation = -25161.866204 eV Core-core repulsion = 21712.359414 eV Total energy + Delta-G solvation = -3449.506790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30957 -38.18199 -37.11924 -35.33117 -33.91890 -32.58720 -31.09283 -29.63784 -29.52064 -27.31736 -25.89314 -24.71276 -22.98505 -22.18029 -21.31995 -20.99456 -19.01610 -18.00393 -17.56299 -17.11681 -16.42452 -15.68716 -15.55356 -15.18689 -14.76452 -14.30627 -14.04858 -13.69961 -13.26377 -13.21872 -13.08627 -12.76037 -12.69354 -12.39996 -12.14618 -12.02338 -11.84763 -11.67513 -11.40892 -11.29921 -11.27395 -11.17874 -11.05547 -10.92609 -10.68961 -10.53260 -9.98145 -9.52693 -9.40741 -8.64271 -8.56775 -8.36539 -8.21677 -7.69187 -7.48919 -6.94540 -4.61096 0.98179 1.59229 1.96279 2.27563 2.65297 2.92387 2.96071 2.98059 3.01682 3.42070 3.68236 3.77935 4.50481 4.72200 4.74998 5.05162 5.18911 5.26090 5.33768 5.47352 5.49168 5.52260 5.67091 5.78166 5.85819 5.94902 6.02084 6.10966 6.19995 6.24737 6.25797 6.37718 6.48915 6.62572 6.77727 6.85076 6.96882 7.05364 7.14061 7.44294 7.58591 7.81074 7.86119 8.02797 8.08412 8.41969 8.65825 8.74711 8.94609 9.95704 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003421 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.516708 B = 8182.750002 C = 9509.992577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.210 3.790 3 H 0.077 0.923 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.221 4.221 7 S 0.084 5.916 8 C -0.159 4.159 9 C -0.070 4.070 10 C 0.105 3.895 11 N -0.615 5.615 12 C 0.581 3.419 13 O -0.557 6.557 14 C -0.274 4.274 15 C -0.077 4.077 16 C -0.169 4.169 17 C 0.125 3.875 18 C -0.446 4.446 19 H 0.082 0.918 20 C 0.072 3.928 21 N -0.785 5.785 22 Si 0.915 3.085 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.232 4.232 27 C -0.032 4.032 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.284 0.716 40 H 0.098 0.902 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 4.057 -12.934 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.104 3.896 3 H 0.095 0.905 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.356 4.356 7 S 0.350 5.650 8 C -0.276 4.276 9 C -0.110 4.110 10 C -0.020 4.020 11 N -0.349 5.349 12 C 0.376 3.624 13 O -0.438 6.438 14 C -0.278 4.278 15 C -0.096 4.096 16 C -0.188 4.188 17 C 0.122 3.878 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.147 4.147 21 N -0.410 5.410 22 Si 0.739 3.261 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.251 4.251 27 C -0.051 4.051 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.156 0.844 32 H 0.180 0.820 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.592 3.113 -13.655 14.095 hybrid contribution -0.454 0.416 0.768 0.985 sum 1.137 3.530 -12.887 13.410 Atomic orbital electron populations 1.22102 0.91971 1.04328 1.00578 1.19966 0.95439 0.93469 0.80691 0.90541 1.19982 0.98412 0.99487 0.95513 1.19913 1.01854 1.01788 0.91182 1.25276 1.03855 1.03361 1.03114 1.84136 1.40454 1.41408 0.99038 1.24754 1.02961 1.02119 0.97791 1.20827 1.00156 1.00078 0.89923 1.21997 0.81934 0.97169 1.00894 1.48069 1.10690 1.58964 1.17167 1.18689 0.84046 0.78452 0.81213 1.90661 1.19538 1.54290 1.79269 1.18909 1.13327 1.03267 0.92289 1.20731 0.95946 0.94957 0.97950 1.21122 1.04302 1.01654 0.91756 1.17794 0.88059 0.88998 0.92922 1.19833 1.03671 1.22898 1.01066 0.89949 1.26036 0.96016 0.96045 0.96593 1.69695 1.09115 1.34420 1.27723 0.86140 0.79286 0.79890 0.80802 1.18246 1.19550 1.19727 1.20749 1.08595 0.98819 0.96952 1.20254 0.95780 0.97545 0.91505 0.91873 0.89662 0.93879 0.84385 0.82001 0.89256 0.89425 0.86078 0.91479 0.88387 0.85623 0.90525 0.88412 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 7.60 37.16 0.28 -1.76 16 2 C 0.21 3.16 3.75 -67.96 -0.26 2.91 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.12 -1.68 5.41 -104.70 -0.57 -2.25 16 5 C -0.12 -1.37 9.38 -41.09 -0.39 -1.76 16 6 C -0.22 -2.37 11.20 28.90 0.32 -2.05 16 7 S 0.08 0.97 23.31 -107.50 -2.51 -1.53 16 8 C -0.16 -2.17 6.39 -35.24 -0.23 -2.40 16 9 C -0.07 -0.95 6.14 -27.44 -0.17 -1.12 16 10 C 0.10 1.58 5.52 -3.63 -0.02 1.56 16 11 N -0.62 -10.55 2.92 -166.69 -0.49 -11.04 16 12 C 0.58 11.96 7.01 -12.42 -0.09 11.88 16 13 O -0.56 -12.42 12.92 5.29 0.07 -12.35 16 14 C -0.27 -6.01 5.20 -104.73 -0.54 -6.56 16 15 C -0.08 -1.66 7.28 -39.61 -0.29 -1.94 16 16 C -0.17 -4.02 8.61 -39.27 -0.34 -4.35 16 17 C 0.13 3.11 5.57 -106.81 -0.59 2.52 16 18 C -0.45 -10.96 9.06 -37.75 -0.34 -11.30 16 19 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 20 C 0.07 1.66 5.29 -17.31 -0.09 1.57 16 21 N -0.78 -18.37 10.71 55.56 0.60 -17.77 16 22 Si 0.91 17.27 29.57 -169.99 -5.03 12.25 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 26 C -0.23 -5.44 9.73 -39.27 -0.38 -5.83 16 27 C -0.03 -0.72 9.56 -39.61 -0.38 -1.10 16 28 H 0.06 1.13 7.15 -51.93 -0.37 0.76 16 29 H 0.08 1.44 6.55 -51.93 -0.34 1.10 16 30 H 0.04 0.54 6.95 -51.93 -0.36 0.18 16 31 H 0.14 1.37 7.34 -52.48 -0.39 0.98 16 32 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.09 1.29 6.31 -51.93 -0.33 0.97 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.12 2.06 4.59 -51.93 -0.24 1.82 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.87 4.44 -52.49 -0.23 1.64 16 38 H 0.13 3.06 6.11 -52.49 -0.32 2.74 16 39 H 0.28 5.99 8.29 -40.82 -0.34 5.65 16 40 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 41 H 0.10 2.06 8.05 -52.49 -0.42 1.63 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -26.80 337.63 -10.99 -37.79 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.66 Total: 9.54 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -4.06 Total: -21.97 kcal Atomic # 7 Polarization: -28.92 SS G_CDS: 0.11 Total: -28.81 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.80 -10.99 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270192533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.256 kcal (2) G-P(sol) polarization free energy of solvation -26.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds