Wall clock time and date at job start Tue Mar 31 2020 14:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.84337 * 2 1 4 4 C 1.52440 * 109.79707 * 239.16157 * 2 1 3 5 5 C 1.39122 * 123.57517 * 48.97732 * 4 2 1 6 6 C 1.32931 * 115.65579 * 179.45136 * 5 4 2 7 7 S 1.75718 * 109.58442 * 0.07280 * 6 5 4 8 8 C 1.34649 * 122.62068 * 228.64903 * 4 2 1 9 9 C 1.51398 * 125.09845 * 0.78892 * 8 4 2 10 10 C 1.53198 * 109.06658 * 341.74558 * 9 8 4 11 11 N 1.46972 * 109.79834 * 120.83817 * 2 1 3 12 12 C 1.34784 * 120.86283 * 344.69838 * 11 2 1 13 13 O 1.21581 * 119.99903 * 354.33414 * 12 11 2 14 14 C 1.47642 * 119.99720 * 174.32917 * 12 11 2 15 15 C 1.40004 * 119.89663 * 320.51161 * 14 12 11 16 16 C 1.36325 * 120.10295 * 179.76144 * 15 14 12 17 17 C 1.40889 * 119.89157 * 0.51303 * 16 15 14 18 18 C 1.41105 * 120.10194 * 179.71871 * 17 16 15 19 19 H 1.08002 * 119.99842 * 208.38623 * 18 17 16 20 20 C 1.40227 * 120.00135 * 28.38316 * 18 17 16 21 21 N 1.30648 * 120.00123 * 9.14612 * 20 18 17 22 22 Si 1.86799 * 120.00233 * 189.14140 * 20 18 17 23 23 H 1.48500 * 109.47054 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47179 * 120.00208 * 22 20 18 25 25 H 1.48495 * 109.47269 * 240.00262 * 22 20 18 26 26 C 1.40885 * 119.79092 * 359.73984 * 17 16 15 27 27 C 1.36316 * 119.89618 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.47038 * 191.06843 * 1 2 3 29 29 H 1.08997 * 109.46841 * 311.07111 * 1 2 3 30 30 H 1.09001 * 109.46743 * 71.06754 * 1 2 3 31 31 H 1.08007 * 122.17533 * 359.43027 * 5 4 2 32 32 H 1.07993 * 125.20607 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.53836 * 101.61625 * 9 8 4 34 34 H 1.08999 * 109.53944 * 221.86631 * 9 8 4 35 35 H 1.08993 * 109.61735 * 165.27383 * 10 9 8 36 36 H 1.09004 * 109.61706 * 285.63631 * 10 9 8 37 37 H 1.07994 * 119.94958 * 0.02562 * 15 14 12 38 38 H 1.08002 * 120.05351 * 180.27696 * 16 15 14 39 39 H 0.97000 * 120.00328 * 179.97438 * 21 20 18 40 40 H 1.08006 * 120.05261 * 180.02562 * 26 17 16 41 41 H 1.07995 * 119.94502 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9000 1.0253 0.0000 4 6 2.0463 -0.7353 -1.2315 5 6 1.5911 -0.4876 -2.5226 6 6 2.1582 -1.2124 -3.4818 7 16 3.3483 -2.2955 -2.7760 8 6 2.9971 -1.6862 -1.1636 9 6 3.6615 -2.1636 0.1103 10 6 3.4390 -1.1219 1.2114 11 7 2.0278 -0.7089 1.1873 12 6 1.2120 -0.9740 2.2270 13 8 0.0774 -0.5371 2.2362 14 6 1.6962 -1.7949 3.3545 15 6 2.5086 -2.9083 3.1088 16 6 2.9620 -3.6665 4.1471 17 6 2.6029 -3.3343 5.4683 18 6 3.0648 -4.1195 6.5459 19 1 2.4822 -4.1881 7.4527 20 6 4.2802 -4.8107 6.4394 21 7 5.0701 -4.5902 5.4224 22 14 4.7700 -6.0465 7.7517 23 1 3.7102 -6.1124 8.7898 24 1 4.9393 -7.3855 7.1322 25 1 6.0496 -5.6247 8.3761 26 6 1.7807 -2.2160 5.7101 27 6 1.3361 -1.4611 4.6658 28 1 -0.3633 -1.0086 0.1973 29 1 -0.3633 0.6752 0.7747 30 1 -0.3633 0.3334 -0.9721 31 1 0.8262 0.2457 -2.7320 32 1 1.9230 -1.1462 -4.5337 33 1 3.2249 -3.1147 0.4148 34 1 4.7305 -2.2900 -0.0613 35 1 3.6762 -1.5585 2.1815 36 1 4.0791 -0.2579 1.0325 37 1 2.7800 -3.1645 2.0954 38 1 3.5923 -4.5226 3.9569 39 1 5.9111 -5.0681 5.3489 40 1 1.5032 -1.9573 6.7213 41 1 0.7056 -0.6040 4.8502 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270192533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:44 Heat of formation + Delta-G solvation = 21.063637 kcal Electronic energy + Delta-G solvation = -25162.360631 eV Core-core repulsion = 21712.359414 eV Total energy + Delta-G solvation = -3450.001218 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69791 -39.58004 -38.73779 -36.59740 -35.64437 -33.85161 -32.49054 -31.35624 -31.14442 -28.46493 -27.60911 -25.92393 -24.30905 -23.37740 -22.85804 -22.68883 -20.45542 -19.35261 -19.08779 -18.35416 -17.78292 -17.17691 -17.00803 -16.35921 -16.12338 -15.89134 -15.48233 -15.14479 -14.70053 -14.53357 -14.35738 -14.23818 -13.99877 -13.69288 -13.64610 -13.50184 -13.29340 -13.00978 -12.81324 -12.80620 -12.65024 -12.48140 -12.39814 -12.27653 -12.07358 -11.73789 -11.65521 -11.29635 -11.13546 -10.19647 -9.69558 -9.49825 -9.48232 -9.31762 -9.24167 -8.67933 -6.46234 0.04859 0.52440 0.67812 1.06349 1.13826 1.40930 1.43052 1.55413 1.70603 2.00906 2.07057 2.19911 2.75280 3.62295 3.66051 3.69538 3.88580 4.06019 4.18483 4.23611 4.31798 4.34564 4.38030 4.43669 4.48781 4.71039 4.76206 4.81903 4.90731 4.98440 5.04019 5.08512 5.17662 5.18556 5.26190 5.32163 5.42252 5.51603 5.62406 5.69894 5.83389 6.00992 6.02829 6.25873 6.49302 6.59074 6.83147 6.91573 7.35378 8.25017 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003421 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.516708 B = 8182.750002 C = 9509.992577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.205 3.795 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.131 4.131 6 C -0.209 4.209 7 S 0.104 5.896 8 C -0.185 4.185 9 C -0.065 4.065 10 C 0.103 3.897 11 N -0.610 5.610 12 C 0.578 3.422 13 O -0.580 6.580 14 C -0.279 4.279 15 C -0.064 4.064 16 C -0.186 4.186 17 C 0.100 3.900 18 C -0.479 4.479 19 H 0.080 0.920 20 C 0.036 3.964 21 N -0.808 5.808 22 Si 0.986 3.014 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.245 4.245 27 C -0.040 4.040 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.193 0.807 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.294 0.706 40 H 0.104 0.896 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 4.050 -15.086 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 H 0.110 0.890 4 C -0.142 4.142 5 C -0.161 4.161 6 C -0.344 4.344 7 S 0.370 5.630 8 C -0.303 4.303 9 C -0.105 4.105 10 C -0.021 4.021 11 N -0.342 5.342 12 C 0.372 3.628 13 O -0.463 6.463 14 C -0.283 4.283 15 C -0.083 4.083 16 C -0.206 4.206 17 C 0.097 3.903 18 C -0.508 4.508 19 H 0.098 0.902 20 C -0.181 4.181 21 N -0.432 5.432 22 Si 0.807 3.193 23 H -0.184 1.184 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.265 4.265 27 C -0.059 4.059 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.176 0.824 32 H 0.210 0.790 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.469 3.121 -15.843 16.335 hybrid contribution -0.723 0.494 1.283 1.553 sum 1.746 3.614 -14.560 15.103 Atomic orbital electron populations 1.21939 0.92335 1.02022 1.01680 1.20138 0.95188 0.94237 0.80382 0.89012 1.19991 0.98722 0.99720 0.95733 1.20060 1.02802 1.02872 0.90325 1.25694 1.02429 1.01800 1.04435 1.84090 1.40462 1.41152 0.97298 1.24818 1.03645 1.02918 0.98885 1.20728 1.01500 0.98617 0.89618 1.22064 0.81010 0.98502 1.00540 1.48055 1.11065 1.58141 1.16910 1.18485 0.84076 0.78484 0.81778 1.90658 1.20485 1.55145 1.79965 1.19191 1.12757 1.03520 0.92826 1.20885 0.94782 0.94046 0.98559 1.21098 1.05277 1.02120 0.92077 1.18116 0.88821 0.89701 0.93698 1.20056 1.04927 1.24576 1.01207 0.90182 1.26813 0.95313 0.97216 0.98724 1.69722 1.09603 1.34948 1.28971 0.85082 0.78869 0.77461 0.77922 1.18386 1.18705 1.18895 1.20883 1.09028 0.98988 0.97588 1.20417 0.95893 0.97715 0.91857 0.94837 0.91544 0.90643 0.82449 0.78977 0.90617 0.87300 0.88240 0.89406 0.86169 0.86510 0.89532 0.87829 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 7.60 71.98 0.55 -3.12 16 2 C 0.21 5.88 3.75 44.72 0.17 6.05 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.13 -3.27 5.41 -19.91 -0.11 -3.38 16 5 C -0.13 -2.64 9.38 21.31 0.20 -2.44 16 6 C -0.21 -3.67 11.20 66.65 0.75 -2.93 16 7 S 0.10 2.11 23.31 -56.49 -1.32 0.80 16 8 C -0.19 -4.69 6.39 25.08 0.16 -4.53 16 9 C -0.07 -1.68 6.14 30.14 0.18 -1.49 16 10 C 0.10 3.03 5.52 86.34 0.48 3.50 16 11 N -0.61 -20.60 2.92 -799.56 -2.33 -22.93 16 12 C 0.58 24.07 7.01 86.73 0.61 24.68 16 13 O -0.58 -26.30 12.92 -3.97 -0.05 -26.35 16 14 C -0.28 -12.52 5.20 -19.94 -0.10 -12.62 16 15 C -0.06 -2.82 7.28 22.25 0.16 -2.66 16 16 C -0.19 -9.14 8.61 22.47 0.19 -8.95 16 17 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 18 C -0.48 -24.27 9.06 23.46 0.21 -24.06 16 19 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 20 C 0.04 1.69 5.29 85.35 0.45 2.14 16 21 N -0.81 -38.20 10.71 21.87 0.23 -37.97 16 22 Si 0.99 35.27 29.57 68.60 2.03 37.30 16 23 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 24 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 25 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 26 C -0.25 -11.98 9.73 22.47 0.22 -11.76 16 27 C -0.04 -1.85 9.56 22.25 0.21 -1.64 16 28 H 0.03 1.19 7.15 -2.39 -0.02 1.17 16 29 H 0.07 2.23 6.55 -2.39 -0.02 2.22 16 30 H 0.07 1.72 6.95 -2.39 -0.02 1.71 16 31 H 0.16 2.51 7.34 -2.91 -0.02 2.48 16 32 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.08 2.15 6.31 -2.39 -0.02 2.13 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.10 3.40 4.59 -2.39 -0.01 3.38 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.12 4.64 4.44 -2.91 -0.01 4.62 16 38 H 0.12 5.87 6.11 -2.91 -0.02 5.85 16 39 H 0.29 12.36 8.29 -92.71 -0.77 11.59 16 40 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 41 H 0.10 4.55 8.05 -2.91 -0.02 4.53 16 Total: -1.00 -59.09 337.63 3.85 -55.24 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 1.07 Total: 32.11 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.21 Total: -38.19 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -2.10 Total: -60.90 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.32 Total: 0.80 kcal Total: -59.09 3.85 -55.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270192533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.304 kcal (2) G-P(sol) polarization free energy of solvation -59.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds