Wall clock time and date at job start Tue Mar 31 2020 14:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.79030 * 2 1 4 4 C 1.52441 * 109.79894 * 120.80191 * 2 1 3 5 5 C 1.39131 * 123.57705 * 288.22043 * 4 2 1 6 6 C 1.32925 * 115.65209 * 179.48608 * 5 4 2 7 7 S 1.75716 * 109.58812 * 0.05851 * 6 5 4 8 8 C 1.34652 * 122.61883 * 107.94645 * 4 2 1 9 9 C 1.51400 * 125.09351 * 0.65190 * 8 4 2 10 10 C 1.53190 * 109.07035 * 341.81713 * 9 8 4 11 11 N 1.46967 * 109.84782 * 239.16317 * 2 1 3 12 12 C 1.34786 * 120.86825 * 105.46825 * 11 2 1 13 13 O 1.21586 * 120.00064 * 176.54947 * 12 11 2 14 14 C 1.47642 * 119.99825 * 356.54451 * 12 11 2 15 15 C 1.40014 * 119.89627 * 331.85574 * 14 12 11 16 16 C 1.36316 * 120.10457 * 179.75626 * 15 14 12 17 17 C 1.40893 * 119.88971 * 0.51705 * 16 15 14 18 18 C 1.41115 * 120.10028 * 179.71552 * 17 16 15 19 19 H 1.07995 * 119.99614 * 205.53252 * 18 17 16 20 20 C 1.40222 * 119.99947 * 25.53643 * 18 17 16 21 21 N 1.30644 * 119.99953 * 16.76909 * 20 18 17 22 22 Si 1.86802 * 120.00084 * 196.76198 * 20 18 17 23 23 H 1.48510 * 109.46789 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47084 * 119.99847 * 22 20 18 25 25 H 1.48499 * 109.47511 * 240.00531 * 22 20 18 26 26 C 1.40882 * 119.79525 * 359.73315 * 17 16 15 27 27 C 1.36315 * 119.89195 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47356 * 299.19212 * 1 2 3 29 29 H 1.09000 * 109.47319 * 59.19270 * 1 2 3 30 30 H 1.09003 * 109.46739 * 179.19366 * 1 2 3 31 31 H 1.08000 * 122.17352 * 359.21064 * 5 4 2 32 32 H 1.07991 * 125.20470 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.53385 * 221.93675 * 9 8 4 34 34 H 1.08997 * 109.59818 * 101.73556 * 9 8 4 35 35 H 1.09002 * 109.61733 * 285.83363 * 10 9 8 36 36 H 1.09000 * 109.61911 * 165.27414 * 10 9 8 37 37 H 1.07997 * 119.94941 * 0.02562 * 15 14 12 38 38 H 1.08002 * 120.05646 * 180.27603 * 16 15 14 39 39 H 0.97002 * 119.99927 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.05833 * 179.97438 * 26 17 16 41 41 H 1.08008 * 119.94768 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0463 -0.7345 1.2320 5 6 1.9660 -0.2223 2.5231 6 6 2.4562 -1.0009 3.4825 7 16 3.0743 -2.4868 2.7771 8 6 2.6210 -1.9503 1.1644 9 6 2.8453 -2.7375 -0.1093 10 6 1.9401 -2.1764 -1.2104 11 7 2.0290 -0.7086 -1.1869 12 6 2.5540 -0.0309 -2.2271 13 8 3.0193 -0.6354 -3.1739 14 6 2.5640 1.4454 -2.2167 15 6 1.5790 2.1450 -1.5090 16 6 1.5871 3.5081 -1.4925 17 6 2.5824 4.2129 -2.1980 18 6 2.5914 5.6240 -2.1889 19 1 3.0460 6.1663 -3.0047 20 6 2.0102 6.3219 -1.1205 21 7 1.7582 5.7046 0.0030 22 14 1.5965 8.1343 -1.3036 23 1 1.9774 8.5940 -2.6634 24 1 0.1381 8.3316 -1.1053 25 1 2.3447 8.9180 -0.2881 26 6 3.5682 3.5046 -2.9129 27 6 3.5549 2.1415 -2.9195 28 1 -0.3634 0.5012 0.8971 29 1 -0.3634 0.5263 -0.8826 30 1 -0.3633 -1.0276 -0.0145 31 1 1.5373 0.7468 2.7317 32 1 2.4726 -0.7571 4.5344 33 1 2.6028 -3.7861 0.0629 34 1 3.8879 -2.6497 -0.4145 35 1 0.9100 -2.4836 -1.0293 36 1 2.2706 -2.5476 -2.1805 37 1 0.8142 1.6039 -0.9719 38 1 0.8296 4.0469 -0.9427 39 1 1.3565 6.1875 0.7422 40 1 4.3329 4.0406 -3.4555 41 1 4.3105 1.5975 -3.4670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270192535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:47 Heat of formation + Delta-G solvation = 33.953879 kcal Electronic energy + Delta-G solvation = -25324.965125 eV Core-core repulsion = 21875.522870 eV Total energy + Delta-G solvation = -3449.442255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27295 -38.12326 -37.10288 -35.23738 -34.03000 -32.95934 -30.43651 -30.01413 -29.44905 -27.72234 -26.00264 -24.32083 -22.95107 -22.50246 -21.19617 -21.01724 -19.05379 -17.90955 -17.46747 -17.17289 -16.26426 -15.89085 -15.41771 -15.12848 -14.70076 -14.29125 -14.05518 -13.66301 -13.49090 -13.23795 -13.01212 -12.83456 -12.69969 -12.49820 -12.09119 -11.90027 -11.74576 -11.68270 -11.60557 -11.43832 -11.26627 -11.15351 -11.00054 -10.92276 -10.64105 -10.43257 -10.02773 -9.50736 -9.30650 -8.98366 -8.52429 -8.36114 -8.23392 -7.66119 -7.53616 -7.02235 -4.60253 1.04744 1.64973 2.01634 2.25245 2.74405 2.90379 2.95186 3.00166 3.00873 3.41399 3.73416 3.78080 4.50020 4.71450 4.77538 5.08115 5.22926 5.24324 5.31250 5.37869 5.48480 5.55139 5.70500 5.73077 5.82818 5.94766 5.98140 6.06020 6.09705 6.16587 6.28025 6.32501 6.42635 6.60648 6.77471 6.82711 6.89224 7.05091 7.12739 7.43936 7.60971 7.78793 7.85654 8.04120 8.09251 8.40004 8.63764 8.75022 8.96360 9.89566 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.003797 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.310649 B = 7372.603532 C = 8571.464285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.182 3.818 3 H 0.137 0.863 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.216 4.216 7 S 0.073 5.927 8 C -0.167 4.167 9 C -0.062 4.062 10 C 0.118 3.882 11 N -0.614 5.614 12 C 0.579 3.421 13 O -0.570 6.570 14 C -0.280 4.280 15 C -0.093 4.093 16 C -0.175 4.175 17 C 0.127 3.873 18 C -0.444 4.444 19 H 0.084 0.916 20 C 0.075 3.925 21 N -0.775 5.775 22 Si 0.911 3.089 23 H -0.258 1.258 24 H -0.269 1.269 25 H -0.272 1.272 26 C -0.236 4.236 27 C -0.025 4.025 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 -10.190 7.538 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.076 3.924 3 H 0.154 0.846 4 C -0.122 4.122 5 C -0.146 4.146 6 C -0.351 4.351 7 S 0.339 5.661 8 C -0.285 4.285 9 C -0.102 4.102 10 C -0.007 4.007 11 N -0.347 5.347 12 C 0.375 3.625 13 O -0.451 6.451 14 C -0.285 4.285 15 C -0.112 4.112 16 C -0.194 4.194 17 C 0.124 3.876 18 C -0.472 4.472 19 H 0.102 0.898 20 C -0.145 4.145 21 N -0.398 5.398 22 Si 0.735 3.265 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.255 4.255 27 C -0.044 4.044 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.185 -11.774 7.916 14.355 hybrid contribution -0.770 2.081 -0.141 2.223 sum -2.955 -9.693 7.776 12.773 Atomic orbital electron populations 1.22224 0.94465 1.02352 1.03009 1.20838 0.93557 0.97655 0.80346 0.84645 1.19951 1.02118 0.94581 0.95555 1.19994 1.02021 1.01417 0.91139 1.25264 1.08391 0.98251 1.03182 1.84011 1.62377 1.20573 0.99159 1.24653 1.06935 0.99318 0.97554 1.20660 1.01588 0.97816 0.90184 1.21427 0.98790 0.81152 0.99304 1.47990 1.63219 1.05684 1.17799 1.18688 0.75086 0.88256 0.80433 1.90631 1.48371 1.70929 1.35136 1.18847 1.05627 0.89701 1.14275 1.21314 0.97575 0.95278 0.97014 1.21008 1.00770 0.92387 1.05266 1.17800 0.88439 0.93295 0.88047 1.19860 1.30804 0.91708 1.04852 0.89794 1.26057 0.92749 1.01532 0.94196 1.69736 1.29062 1.38943 1.02081 0.86196 0.79132 0.81193 0.79979 1.18108 1.19407 1.19703 1.20708 1.01838 0.93095 1.09899 1.20302 0.95629 0.93954 0.94561 0.91062 0.90736 0.92316 0.83962 0.81918 0.89944 0.89919 0.91465 0.88383 0.86454 0.86135 0.90374 0.88434 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.51 37.16 0.32 -1.85 16 2 C 0.18 2.88 2.30 -67.96 -0.16 2.72 16 3 H 0.14 2.48 4.51 -51.93 -0.23 2.25 16 4 C -0.11 -1.60 5.17 -104.69 -0.54 -2.14 16 5 C -0.12 -1.52 9.99 -41.09 -0.41 -1.93 16 6 C -0.22 -2.53 11.20 28.90 0.32 -2.21 16 7 S 0.07 0.87 23.31 -107.50 -2.51 -1.64 16 8 C -0.17 -2.31 6.39 -35.23 -0.23 -2.54 16 9 C -0.06 -0.80 6.43 -27.44 -0.18 -0.97 16 10 C 0.12 1.69 6.26 -3.64 -0.02 1.66 16 11 N -0.61 -10.68 2.58 -166.69 -0.43 -11.11 16 12 C 0.58 12.37 7.48 -12.42 -0.09 12.28 16 13 O -0.57 -13.43 16.09 5.29 0.09 -13.35 16 14 C -0.28 -6.35 5.52 -104.73 -0.58 -6.93 16 15 C -0.09 -2.02 7.37 -39.61 -0.29 -2.32 16 16 C -0.18 -4.18 8.63 -39.27 -0.34 -4.52 16 17 C 0.13 3.20 5.57 -106.80 -0.59 2.60 16 18 C -0.44 -10.94 9.05 -37.75 -0.34 -11.28 16 19 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 20 C 0.08 1.73 5.15 -17.31 -0.09 1.64 16 21 N -0.77 -18.10 10.95 55.56 0.61 -17.49 16 22 Si 0.91 17.10 29.59 -169.99 -5.03 12.07 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 27 C -0.03 -0.59 9.52 -39.61 -0.38 -0.97 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.05 6.61 -51.93 -0.34 0.71 16 30 H 0.06 0.72 7.36 -51.93 -0.38 0.34 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 36 H 0.10 1.47 7.03 -51.93 -0.37 1.11 16 37 H 0.12 2.19 2.66 -52.49 -0.14 2.05 16 38 H 0.12 2.90 6.18 -52.49 -0.32 2.58 16 39 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 40 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.10 2.19 7.88 -52.48 -0.41 1.77 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -27.89 342.49 -10.76 -38.65 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.67 Total: 10.50 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.98 Total: -22.80 kcal Atomic # 7 Polarization: -28.78 SS G_CDS: 0.18 Total: -28.60 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.89 -10.76 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270192535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.609 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds