Wall clock time and date at job start Tue Mar 31 2020 14:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.79030 * 2 1 4 4 C 1.52441 * 109.79894 * 120.80191 * 2 1 3 5 5 C 1.39131 * 123.57705 * 288.22043 * 4 2 1 6 6 C 1.32925 * 115.65209 * 179.48608 * 5 4 2 7 7 S 1.75716 * 109.58812 * 0.05851 * 6 5 4 8 8 C 1.34652 * 122.61883 * 107.94645 * 4 2 1 9 9 C 1.51400 * 125.09351 * 0.65190 * 8 4 2 10 10 C 1.53190 * 109.07035 * 341.81713 * 9 8 4 11 11 N 1.46967 * 109.84782 * 239.16317 * 2 1 3 12 12 C 1.34786 * 120.86825 * 105.46825 * 11 2 1 13 13 O 1.21586 * 120.00064 * 176.54947 * 12 11 2 14 14 C 1.47642 * 119.99825 * 356.54451 * 12 11 2 15 15 C 1.40014 * 119.89627 * 331.85574 * 14 12 11 16 16 C 1.36316 * 120.10457 * 179.75626 * 15 14 12 17 17 C 1.40893 * 119.88971 * 0.51705 * 16 15 14 18 18 C 1.41115 * 120.10028 * 179.71552 * 17 16 15 19 19 H 1.07995 * 119.99614 * 205.53252 * 18 17 16 20 20 C 1.40222 * 119.99947 * 25.53643 * 18 17 16 21 21 N 1.30644 * 119.99953 * 16.76909 * 20 18 17 22 22 Si 1.86802 * 120.00084 * 196.76198 * 20 18 17 23 23 H 1.48510 * 109.46789 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47084 * 119.99847 * 22 20 18 25 25 H 1.48499 * 109.47511 * 240.00531 * 22 20 18 26 26 C 1.40882 * 119.79525 * 359.73315 * 17 16 15 27 27 C 1.36315 * 119.89195 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47356 * 299.19212 * 1 2 3 29 29 H 1.09000 * 109.47319 * 59.19270 * 1 2 3 30 30 H 1.09003 * 109.46739 * 179.19366 * 1 2 3 31 31 H 1.08000 * 122.17352 * 359.21064 * 5 4 2 32 32 H 1.07991 * 125.20470 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.53385 * 221.93675 * 9 8 4 34 34 H 1.08997 * 109.59818 * 101.73556 * 9 8 4 35 35 H 1.09002 * 109.61733 * 285.83363 * 10 9 8 36 36 H 1.09000 * 109.61911 * 165.27414 * 10 9 8 37 37 H 1.07997 * 119.94941 * 0.02562 * 15 14 12 38 38 H 1.08002 * 120.05646 * 180.27603 * 16 15 14 39 39 H 0.97002 * 119.99927 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.05833 * 179.97438 * 26 17 16 41 41 H 1.08008 * 119.94768 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0463 -0.7345 1.2320 5 6 1.9660 -0.2223 2.5231 6 6 2.4562 -1.0009 3.4825 7 16 3.0743 -2.4868 2.7771 8 6 2.6210 -1.9503 1.1644 9 6 2.8453 -2.7375 -0.1093 10 6 1.9401 -2.1764 -1.2104 11 7 2.0290 -0.7086 -1.1869 12 6 2.5540 -0.0309 -2.2271 13 8 3.0193 -0.6354 -3.1739 14 6 2.5640 1.4454 -2.2167 15 6 1.5790 2.1450 -1.5090 16 6 1.5871 3.5081 -1.4925 17 6 2.5824 4.2129 -2.1980 18 6 2.5914 5.6240 -2.1889 19 1 3.0460 6.1663 -3.0047 20 6 2.0102 6.3219 -1.1205 21 7 1.7582 5.7046 0.0030 22 14 1.5965 8.1343 -1.3036 23 1 1.9774 8.5940 -2.6634 24 1 0.1381 8.3316 -1.1053 25 1 2.3447 8.9180 -0.2881 26 6 3.5682 3.5046 -2.9129 27 6 3.5549 2.1415 -2.9195 28 1 -0.3634 0.5012 0.8971 29 1 -0.3634 0.5263 -0.8826 30 1 -0.3633 -1.0276 -0.0145 31 1 1.5373 0.7468 2.7317 32 1 2.4726 -0.7571 4.5344 33 1 2.6028 -3.7861 0.0629 34 1 3.8879 -2.6497 -0.4145 35 1 0.9100 -2.4836 -1.0293 36 1 2.2706 -2.5476 -2.1805 37 1 0.8142 1.6039 -0.9719 38 1 0.8296 4.0469 -0.9427 39 1 1.3565 6.1875 0.7422 40 1 4.3329 4.0406 -3.4555 41 1 4.3105 1.5975 -3.4670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270192535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:46 Heat of formation + Delta-G solvation = 21.588481 kcal Electronic energy + Delta-G solvation = -25325.501329 eV Core-core repulsion = 21875.522870 eV Total energy + Delta-G solvation = -3449.978459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68213 -39.55221 -38.80285 -36.52970 -35.73878 -34.23174 -31.81259 -31.64507 -31.21289 -28.89967 -27.65675 -25.56106 -24.13286 -23.88451 -22.86463 -22.60376 -20.47344 -19.44971 -18.88361 -18.53548 -17.54390 -17.34601 -16.90398 -16.49522 -16.10845 -15.79816 -15.45977 -15.05932 -14.89284 -14.63756 -14.41303 -14.12993 -14.08370 -13.71606 -13.68298 -13.42730 -13.20871 -12.94109 -12.84005 -12.80322 -12.70415 -12.55465 -12.41718 -12.18280 -12.06113 -11.74539 -11.58613 -11.24794 -11.06434 -10.68483 -9.77212 -9.55009 -9.46464 -9.36159 -9.20648 -8.75898 -6.46504 0.05263 0.48028 0.68833 1.04606 1.13688 1.39482 1.42877 1.55567 1.71665 1.98799 2.10725 2.18895 2.74314 3.60980 3.65413 3.68288 3.95577 4.02249 4.17464 4.18921 4.29061 4.39147 4.40701 4.46806 4.52424 4.70777 4.79295 4.80358 4.87478 4.91276 4.95841 5.04709 5.12798 5.16775 5.24607 5.31490 5.36170 5.54390 5.58308 5.63135 5.82260 5.97161 6.01004 6.23722 6.48300 6.55998 6.79504 6.90363 7.31903 8.19153 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.003797 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.310649 B = 7372.603532 C = 8571.464285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.180 3.820 3 H 0.107 0.893 4 C -0.125 4.125 5 C -0.135 4.135 6 C -0.209 4.209 7 S 0.112 5.888 8 C -0.187 4.187 9 C -0.058 4.058 10 C 0.113 3.887 11 N -0.607 5.607 12 C 0.576 3.424 13 O -0.600 6.600 14 C -0.292 4.292 15 C -0.080 4.080 16 C -0.193 4.193 17 C 0.101 3.899 18 C -0.476 4.476 19 H 0.082 0.918 20 C 0.041 3.959 21 N -0.798 5.798 22 Si 0.984 3.016 23 H -0.260 1.260 24 H -0.259 1.259 25 H -0.264 1.264 26 C -0.252 4.252 27 C -0.037 4.037 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.190 0.810 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.297 0.703 40 H 0.102 0.898 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -10.957 9.671 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 H 0.124 0.876 4 C -0.138 4.138 5 C -0.165 4.165 6 C -0.344 4.344 7 S 0.378 5.622 8 C -0.304 4.304 9 C -0.097 4.097 10 C -0.010 4.010 11 N -0.338 5.338 12 C 0.371 3.629 13 O -0.484 6.484 14 C -0.296 4.296 15 C -0.098 4.098 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.504 4.504 19 H 0.100 0.900 20 C -0.178 4.178 21 N -0.421 5.421 22 Si 0.804 3.196 23 H -0.183 1.183 24 H -0.184 1.184 25 H -0.188 1.188 26 C -0.271 4.271 27 C -0.056 4.056 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.207 0.793 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.164 0.836 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.298 -12.578 10.086 16.456 hybrid contribution -0.388 2.187 -0.693 2.327 sum -3.686 -10.390 9.392 14.483 Atomic orbital electron populations 1.22181 0.92420 1.03539 1.03357 1.20794 0.95086 0.96237 0.80463 0.87579 1.19905 1.03356 0.95083 0.95443 1.20075 1.03369 1.02185 0.90909 1.25656 1.06667 0.97801 1.04302 1.83892 1.61298 1.19918 0.97129 1.24862 1.07009 0.99441 0.99127 1.20640 1.00427 0.99453 0.89227 1.21678 1.00761 0.78919 0.99661 1.47987 1.61599 1.07199 1.16986 1.18497 0.75497 0.87783 0.81139 1.90604 1.49958 1.71237 1.36560 1.19150 1.05466 0.91051 1.13943 1.21586 0.97626 0.94654 0.95897 1.21027 1.00857 0.93214 1.06156 1.18138 0.89103 0.94118 0.88802 1.20097 1.32537 0.91904 1.05835 0.90007 1.26841 0.91892 1.05809 0.93285 1.69748 1.28733 1.40924 1.02712 0.85113 0.79218 0.75436 0.79784 1.18325 1.18372 1.18823 1.20832 1.02249 0.93471 1.10581 1.20450 0.96204 0.93963 0.94981 0.89300 0.91727 0.90652 0.83452 0.79262 0.86697 0.91141 0.88891 0.89367 0.83555 0.86637 0.89209 0.87971 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 8.51 71.98 0.61 -3.31 16 2 C 0.18 5.54 2.30 44.72 0.10 5.64 16 3 H 0.11 3.92 4.51 -2.39 -0.01 3.91 16 4 C -0.12 -3.46 5.17 -19.91 -0.10 -3.56 16 5 C -0.14 -3.30 9.99 21.31 0.21 -3.09 16 6 C -0.21 -4.28 11.20 66.65 0.75 -3.53 16 7 S 0.11 2.30 23.31 -56.49 -1.32 0.99 16 8 C -0.19 -4.76 6.39 25.09 0.16 -4.60 16 9 C -0.06 -1.36 6.43 30.13 0.19 -1.16 16 10 C 0.11 3.07 6.26 86.34 0.54 3.61 16 11 N -0.61 -20.82 2.58 -799.55 -2.06 -22.88 16 12 C 0.58 25.01 7.48 86.73 0.65 25.66 16 13 O -0.60 -28.92 16.09 -3.99 -0.06 -28.98 16 14 C -0.29 -13.63 5.52 -19.93 -0.11 -13.74 16 15 C -0.08 -3.53 7.37 22.25 0.16 -3.36 16 16 C -0.19 -9.51 8.63 22.47 0.19 -9.32 16 17 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 18 C -0.48 -24.15 9.05 23.46 0.21 -23.94 16 19 H 0.08 4.02 7.90 -2.91 -0.02 4.00 16 20 C 0.04 1.87 5.15 85.35 0.44 2.31 16 21 N -0.80 -37.44 10.95 21.87 0.24 -37.20 16 22 Si 0.98 34.69 29.59 68.60 2.03 36.72 16 23 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 24 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 25 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 26 C -0.25 -12.68 9.73 22.47 0.22 -12.46 16 27 C -0.04 -1.80 9.52 22.25 0.21 -1.59 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.74 6.61 -2.39 -0.02 1.72 16 30 H 0.07 1.64 7.36 -2.39 -0.02 1.62 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.19 2.75 8.06 -2.92 -0.02 2.73 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.06 7.36 -2.39 -0.02 2.04 16 36 H 0.09 2.59 7.03 -2.39 -0.02 2.58 16 37 H 0.15 5.48 2.66 -2.91 -0.01 5.47 16 38 H 0.12 5.72 6.18 -2.91 -0.02 5.70 16 39 H 0.30 12.28 8.29 -92.71 -0.77 11.51 16 40 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.10 4.67 7.88 -2.91 -0.02 4.65 16 Total: -1.00 -61.72 342.49 4.22 -57.49 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 1.07 Total: 35.10 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 4.33 Total: -41.24 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -1.82 Total: -60.08 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.06 Total: -28.98 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.99 kcal Total: -61.72 4.22 -57.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270192535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.081 kcal (2) G-P(sol) polarization free energy of solvation -61.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds