Wall clock time and date at job start Tue Mar 31 2020 14:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47009 * 2 1 4 4 C 1.52997 * 109.47623 * 239.99718 * 2 1 3 5 5 O 1.42899 * 109.47031 * 119.99492 * 2 1 3 6 6 C 1.35966 * 116.99937 * 61.77618 * 5 2 1 7 7 C 1.38539 * 120.06913 * 354.10174 * 6 5 2 8 8 C 1.38439 * 119.98878 * 179.77018 * 7 6 5 9 9 F 1.35105 * 119.93118 * 180.23192 * 8 7 6 10 10 C 1.38473 * 120.13136 * 0.48003 * 8 7 6 11 11 C 1.38195 * 120.13777 * 359.77128 * 10 8 7 12 12 C 1.38709 * 120.00941 * 359.97438 * 11 10 8 13 13 N 1.40223 * 120.06889 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99679 * 18.77539 * 13 12 11 15 15 O 1.21299 * 120.00236 * 5.32564 * 14 13 12 16 16 C 1.50704 * 120.00235 * 185.33065 * 14 13 12 17 17 S 1.80995 * 109.47387 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00015 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00139 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00227 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47567 * 59.99441 * 22 20 18 24 24 H 1.48500 * 109.47394 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46983 * 299.99742 * 22 20 18 26 26 H 1.09002 * 109.47457 * 320.82423 * 1 2 3 27 27 H 1.08997 * 109.47077 * 80.82615 * 1 2 3 28 28 H 1.09002 * 109.47350 * 200.82657 * 1 2 3 29 29 H 1.09001 * 109.47075 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46582 * 299.99725 * 3 2 1 31 31 H 1.08997 * 109.47415 * 59.99445 * 3 2 1 32 32 H 1.09000 * 109.46846 * 292.41764 * 4 2 1 33 33 H 1.09001 * 109.46662 * 52.40613 * 4 2 1 34 34 H 1.08993 * 109.47500 * 172.40723 * 4 2 1 35 35 H 1.08001 * 120.00790 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.93364 * 179.75339 * 10 8 7 37 37 H 1.07998 * 120.00098 * 179.97438 * 11 10 8 38 38 H 0.96995 * 120.00641 * 198.76935 * 13 12 11 39 39 H 1.08998 * 109.46705 * 300.00252 * 16 14 13 40 40 H 1.09006 * 109.46720 * 59.99167 * 16 14 13 41 41 H 0.97000 * 120.00129 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0062 -0.6735 1.1668 6 6 1.6718 -1.9844 1.3026 7 6 0.8031 -2.5762 0.4001 8 6 0.4675 -3.9123 0.5372 9 9 -0.3761 -4.4895 -0.3463 10 6 0.9906 -4.6569 1.5809 11 6 1.8535 -4.0706 2.4872 12 6 2.1979 -2.7338 2.3524 13 7 3.0729 -2.1374 3.2716 14 6 3.8679 -2.9066 4.0416 15 8 3.8976 -4.1074 3.8731 16 6 4.7199 -2.2747 5.1121 17 16 5.6657 -3.5593 5.9671 18 6 6.5460 -2.5692 7.1288 19 1 6.4016 -1.4990 7.1451 20 6 7.4251 -3.1645 8.0228 21 7 7.6007 -4.4690 8.0032 22 14 8.3578 -2.1149 9.2547 23 1 7.3921 -1.3973 10.1251 24 1 9.2248 -2.9845 10.0898 25 1 9.1977 -1.1285 8.5288 26 1 -0.3634 0.7967 0.6492 27 1 -0.3633 0.1638 -1.0145 28 1 -0.3634 -0.9605 0.3654 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.7917 -1.7806 -1.1839 33 1 1.5701 -0.2919 -2.1339 34 1 3.1215 -0.6052 -1.3196 35 1 0.3904 -1.9963 -0.4121 36 1 0.7235 -5.6980 1.6871 37 1 2.2599 -4.6533 3.3007 38 1 3.1062 -1.1715 3.3532 39 1 5.4058 -1.5607 4.6562 40 1 4.0802 -1.7579 5.8276 41 1 8.2148 -4.8851 8.6282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270851991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:00 Heat of formation + Delta-G solvation = -72.650304 kcal Electronic energy + Delta-G solvation = -25228.439153 eV Core-core repulsion = 21343.604969 eV Total energy + Delta-G solvation = -3884.834184 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.95830 -41.27848 -39.73007 -37.52501 -34.85290 -34.00977 -32.46505 -31.05942 -30.15598 -27.93032 -27.84277 -27.65556 -25.51810 -23.74404 -22.60076 -20.77037 -20.48141 -18.46494 -17.85401 -17.64162 -16.97104 -16.46528 -16.00644 -15.63188 -15.48093 -15.21890 -14.96601 -14.83311 -14.67599 -14.11789 -14.08814 -13.60508 -13.51498 -13.23609 -12.98899 -12.76569 -12.64852 -12.57732 -12.29204 -12.18154 -12.04792 -11.80792 -11.50438 -11.08235 -11.06156 -10.97090 -10.81146 -10.76046 -10.33010 -9.87765 -9.39416 -9.09237 -8.70963 -8.31692 -7.75627 -6.55538 -6.25324 -3.96851 1.00515 1.13456 2.73156 2.81630 2.90076 3.21754 3.24803 3.27772 3.55063 3.59434 4.13029 4.16420 4.31133 4.35348 4.49408 4.56071 4.78246 4.86149 5.01255 5.08449 5.10113 5.11990 5.25340 5.25922 5.33929 5.39282 5.41105 5.58768 5.64336 5.69653 5.78012 5.79556 5.82370 5.91212 5.99084 6.06532 6.27321 6.41658 6.72928 7.17326 7.48997 7.56196 8.31314 8.34304 9.20069 10.82036 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.002752 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.966891 B =10172.115867 C =11458.727292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.111 3.889 3 C -0.138 4.138 4 C -0.199 4.199 5 O -0.304 6.304 6 C 0.124 3.876 7 C -0.240 4.240 8 C 0.101 3.899 9 F -0.142 7.142 10 C -0.162 4.162 11 C -0.082 4.082 12 C 0.127 3.873 13 N -0.665 5.665 14 C 0.533 3.467 15 O -0.497 6.497 16 C -0.154 4.154 17 S -0.055 6.055 18 C -0.538 4.538 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.176 0.824 38 H 0.415 0.585 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 9.992 -17.876 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.073 3.927 3 C -0.195 4.195 4 C -0.256 4.256 5 O -0.218 6.218 6 C 0.076 3.924 7 C -0.259 4.259 8 C 0.081 3.919 9 F -0.121 7.121 10 C -0.182 4.182 11 C -0.103 4.103 12 C 0.031 3.969 13 N -0.310 5.310 14 C 0.321 3.679 15 O -0.371 6.371 16 C -0.304 4.304 17 S 0.172 5.828 18 C -0.686 4.686 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.180 0.820 36 H 0.157 0.843 37 H 0.193 0.807 38 H 0.251 0.749 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.165 7.980 -17.909 24.787 hybrid contribution 0.297 2.457 0.577 2.541 sum -14.868 10.436 -17.332 25.107 Atomic orbital electron populations 1.22966 0.94879 1.04763 1.03465 1.21810 0.93865 0.93086 0.83922 1.21817 1.02438 0.92176 1.03062 1.22851 1.02923 1.02753 0.97103 1.86104 1.72439 1.19584 1.43683 1.18151 0.96378 0.84133 0.93739 1.21532 1.04859 0.95274 1.04254 1.17401 0.93199 0.91177 0.90121 1.91478 1.68726 1.84646 1.67201 1.21052 1.00498 1.01179 0.95467 1.21638 0.95270 0.93044 1.00308 1.17287 0.95710 0.92786 0.91158 1.43526 1.38715 1.11077 1.37669 1.20551 0.78795 0.87147 0.81403 1.90588 1.64002 1.14629 1.67863 1.23550 1.01817 1.06079 0.98995 1.85384 1.50391 1.07052 1.40022 1.22819 1.29448 0.95449 1.20864 0.90859 1.24989 0.96112 0.95317 0.97090 1.70002 1.34990 1.09017 1.36236 0.86212 0.79366 0.79651 0.80211 1.19903 1.20793 1.19906 0.91275 0.90860 0.89566 0.91285 0.90379 0.91327 0.90039 0.90868 0.91228 0.81979 0.84327 0.80676 0.74887 0.88760 0.88641 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 8.06 37.15 0.30 -1.10 16 2 C 0.11 0.88 1.11 -90.62 -0.10 0.78 16 3 C -0.14 -0.87 8.74 37.16 0.32 -0.55 16 4 C -0.20 -1.50 8.09 37.16 0.30 -1.20 16 5 O -0.30 -3.27 9.13 -19.63 -0.18 -3.45 16 6 C 0.12 1.49 6.08 -39.08 -0.24 1.25 16 7 C -0.24 -2.62 5.74 -39.40 -0.23 -2.85 16 8 C 0.10 1.22 7.30 -39.42 -0.29 0.93 16 9 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 10 C -0.16 -2.04 10.02 -39.51 -0.40 -2.44 16 11 C -0.08 -1.20 8.80 -39.42 -0.35 -1.54 16 12 C 0.13 1.79 6.53 -83.45 -0.55 1.24 16 13 N -0.66 -9.48 5.34 -9.72 -0.05 -9.53 16 14 C 0.53 9.57 7.71 -10.98 -0.08 9.49 16 15 O -0.50 -10.41 12.72 5.54 0.07 -10.34 16 16 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 17 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 18 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 22 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H 0.07 0.45 7.96 -51.93 -0.41 0.03 16 27 H 0.07 0.38 7.85 -51.93 -0.41 -0.03 16 28 H 0.09 0.69 4.60 -51.93 -0.24 0.45 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.08 0.70 4.68 -51.93 -0.24 0.46 16 33 H 0.07 0.40 7.97 -51.93 -0.41 -0.01 16 34 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.16 1.44 3.57 -52.49 -0.19 1.26 16 36 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.18 2.88 5.35 -52.49 -0.28 2.60 16 38 H 0.42 4.88 8.23 -40.82 -0.34 4.55 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -32.23 351.64 -7.23 -39.46 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.02 Total: 4.23 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.88 Total: -11.42 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.68 Total: -34.53 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.11 Total: -13.79 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.23 -7.23 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270851991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.190 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds